Clone Name | bastl45d05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK073183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033009O22, full insert sequence Length = 2735 Score = 252 bits (127), Expect = 8e-64 Identities = 274/321 (85%), Gaps = 4/321 (1%) Strand = Plus / Plus Query: 123 ctgggagcgctgtgccgcggcggaggctggtcctacgcggccatctggcgctccgaccgt 182 ||||||||||| ||||||||||| || |||| |||||| || |||||||||||||||||| Sbjct: 136 ctgggagcgctctgccgcggcgggggatggtgctacgccgcgatctggcgctccgaccgt 195 Query: 183 cgcgacccacgtttgctaacaattggagagtgccactgtgaagatgaagcccgaagagtt 242 ||||||||||| ||||| || || || |||| |||| ||||||||| || ||| ||| Sbjct: 196 cgcgacccacggttgcttacgatcggtgagttccacagtgaagatggtaccagaaatgtt 255 Query: 243 gttgagaatatgcttaatcaagtccatgttgttggagaaggcatcatagggacagctcta 302 |||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 256 gttgagaagatgcttaatcaggtccatgttgttggagaaggcatcatagggagagctcta 315 Query: 303 gtaagtgggaagtgccgatggatttccgatgatgattcctttagtttggttcagacatgc 362 |||||||| |||||| ||||||||| |||| ||||||||||| | |||||| | Sbjct: 316 gtaagtggagagtgccaatggatttc---tgatacctcctttagttttgcccagacaagt 372 Query: 363 aacgtagaaaacctaggcttatttcagggctatacttggtggcaacatcagttcatgagc 422 | | ||| |||| || ||||||||||||||||||||||||||| ||||||||| || | Sbjct: 373 gatgcagataaccaagacttatttcagggctatacttggtggcagcatcagttcctgtgt 432 Query: 423 gg-ataaagactattgcagta 442 || |||||||||||||||||| Sbjct: 433 ggaataaagactattgcagta 453
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 123 ctgggagcgctgtgccgcggcggaggctggtcctacgcggccatctggcgctccgaccgt 182 ||||||||||| ||||||||||| || |||| |||||| || |||||||||||||||||| Sbjct: 27435184 ctgggagcgctctgccgcggcgggggatggtgctacgccgcgatctggcgctccgaccgt 27435243 Query: 183 cgcgacccacg 193 ||||||||||| Sbjct: 27435244 cgcgacccacg 27435254 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 240 gttgttgagaatatgcttaatcaagtccatgttgttggagaagg 283 ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 27436394 gttgttgagaagatgcttaatcaggtccatgttgttggagaagg 27436437 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 283 gcatcatagggacagctctagtaagtgggaagtgccgatggatttc 328 |||||||||||| ||||||||||||||| |||||| ||||||||| Sbjct: 27436763 gcatcatagggagagctctagtaagtggagagtgccaatggatttc 27436808 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 388 agggctatacttggtggcaacatcagttc 416 ||||||||||||||||||| ||||||||| Sbjct: 27437137 agggctatacttggtggcagcatcagttc 27437165
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 123 ctgggagcgctgtgccgcggcggaggctggtcctacgcggccatctggcgctccgaccgt 182 ||||||||||| ||||||||||| || |||| |||||| || |||||||||||||||||| Sbjct: 26906 ctgggagcgctctgccgcggcgggggatggtgctacgccgcgatctggcgctccgaccgt 26965 Query: 183 cgcgacccacg 193 ||||||||||| Sbjct: 26966 cgcgacccacg 26976 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 240 gttgttgagaatatgcttaatcaagtccatgttgttggagaagg 283 ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 28116 gttgttgagaagatgcttaatcaggtccatgttgttggagaagg 28159 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 283 gcatcatagggacagctctagtaagtgggaagtgccgatggatttc 328 |||||||||||| ||||||||||||||| |||||| ||||||||| Sbjct: 28485 gcatcatagggagagctctagtaagtggagagtgccaatggatttc 28530 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 388 agggctatacttggtggcaacatcagttc 416 ||||||||||||||||||| ||||||||| Sbjct: 28859 agggctatacttggtggcagcatcagttc 28887
>emb|AJ005198.1|SAAJ5198 Streptomyces alboniger stgA, stgU and stgR genes Length = 3240 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 44 ccccgcccgcggcggcgtacgt 65 |||||||||||||||||||||| Sbjct: 1690 ccccgcccgcggcggcgtacgt 1711
>emb|AJ006517.1|SAN6517 Streptomyces anulatus stgA, stgU and stgR genes Length = 3240 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 44 ccccgcccgcggcggcgtacgt 65 |||||||||||||||||||||| Sbjct: 1690 ccccgcccgcggcggcgtacgt 1711
>emb|AL133173.20| Human DNA sequence from clone RP11-453N3 on chromosome 10 Contains a RING finger protein 18 (RNF18) pseudogene, an actin-related protein 3 homolog (yeast) (ACTR3) pseudogene, a poly(A) cytoplasmic binding protein 3 (PABPC3) pseudogene, a gene for a novel protein similar to ATP-binding cassette sub-family D (ALD) member 1 (ABCD1), two novel genes and two CpG islands, complete sequence Length = 206192 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 cgatgatgattcctttagttt 349 ||||||||||||||||||||| Sbjct: 199045 cgatgatgattcctttagttt 199065
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 35 cctcctgctccccgcccgcggcggcgtac 63 |||||| ||||||||| |||||||||||| Sbjct: 21399761 cctcctcctccccgccggcggcggcgtac 21399789 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 acaccacaccgccctcctcct 40 ||||||||||||||||||||| Sbjct: 13844067 acaccacaccgccctcctcct 13844047
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 35 cctcctgctccccgcccgcggcggcgtac 63 |||||| ||||||||| |||||||||||| Sbjct: 16866 cctcctcctccccgccggcggcggcgtac 16894
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 acaccacaccgccctcctcct 40 ||||||||||||||||||||| Sbjct: 93551 acaccacaccgccctcctcct 93531
>ref|XM_509746.1| PREDICTED: Pan troglodytes similar to Coagulation factor X precursor (Stuart factor) (Stuart-Prower factor) (LOC452679), mRNA Length = 1225 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 917 caccgccctcctcctgctcc 898
>gb|AC104932.22| Mus musculus chromosome 3, clone RP24-337A16, complete sequence Length = 184718 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gctccccgcccgcggcggcg 60 |||||||||||||||||||| Sbjct: 116129 gctccccgcccgcggcggcg 116110
>gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, complete sequence Length = 144770 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 gagtgccactgtgaagatgaagcc 233 ||||| |||||||||||||||||| Sbjct: 124193 gagtgacactgtgaagatgaagcc 124216
>gb|BC046125.1| Homo sapiens coagulation factor X, mRNA (cDNA clone MGC:57588 IMAGE:5723510), complete cds Length = 1541 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 936 caccgccctcctcctgctcc 917
>gb|BC040125.1| Homo sapiens coagulation factor X, mRNA (cDNA clone IMAGE:5764698), partial cds Length = 1573 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 902 caccgccctcctcctgctcc 883
>ref|XM_590940.2| PREDICTED: Bos taurus similar to nuclear distribution gene C homolog (A. nidulans), transcript variant 1 (LOC513277), mRNA Length = 1315 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cctcctcctgctccccgccc 51 |||||||||||||||||||| Sbjct: 120 cctcctcctgctccccgccc 101
>ref|XM_878820.1| PREDICTED: Bos taurus similar to nuclear distribution gene C homolog (A. nidulans), transcript variant 5 (LOC513277), mRNA Length = 1329 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cctcctcctgctccccgccc 51 |||||||||||||||||||| Sbjct: 116 cctcctcctgctccccgccc 97
>ref|XM_878789.1| PREDICTED: Bos taurus similar to nuclear distribution gene C homolog (A. nidulans), transcript variant 4 (LOC513277), mRNA Length = 1311 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cctcctcctgctccccgccc 51 |||||||||||||||||||| Sbjct: 116 cctcctcctgctccccgccc 97
>ref|XM_878762.1| PREDICTED: Bos taurus similar to nuclear distribution gene C homolog (A. nidulans), transcript variant 3 (LOC513277), mRNA Length = 1227 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cctcctcctgctccccgccc 51 |||||||||||||||||||| Sbjct: 116 cctcctcctgctccccgccc 97
>gb|AC163092.4| Mus musculus chromosome 3, clone RP24-212F17, complete sequence Length = 150636 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gctccccgcccgcggcggcg 60 |||||||||||||||||||| Sbjct: 8720 gctccccgcccgcggcggcg 8701
>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence Length = 166883 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 cacaccacaccgccctcctcctgc 42 |||||||||| ||||||||||||| Sbjct: 64448 cacaccacactgccctcctcctgc 64471
>emb|AL137002.19| Human DNA sequence from clone RP11-98F14 on chromosome 13q22.1-31.1 Contains the 3' end of the MCF2L gene for MCF.2 cell line derived transforming sequence-like, the F7 gene for coagulation factor VII (serum prothrombin conversion accelerator), the F10 gene for coagulation factor X, a lysyl-tRNA synthetase (KARS) pseudogene, the PROZ gene for protein Z, vitamin K-dependent plasma glycoprotein (PZ), the 3' end of a novel gene (FLJ11305) and six CpG islands, complete sequence Length = 132933 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 73591 caccgccctcctcctgctcc 73572
>emb|AL035086.12|HS44A20 Human DNA sequence from clone RP1-44A20 on chromosome 6q23.1-24.3 Contains part of the gene for a novel protein similar to C1-tetrahydrofolate synthases (contains DKFZP586G1517 protein and FLJ21145, contains a tetrahydrofolate dehydrogenase/cyclohydrolase domain), part of a novel gene (contains FLJ31738 and KIAA1209) and a novel pseudogene similar to phosducin-like proteins. Contains a CpG island, complete sequence Length = 165090 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 ccgccctcctcctgctccccgccc 51 |||||||||||||||||| ||||| Sbjct: 57965 ccgccctcctcctgctcctcgccc 57988
>ref|NM_000504.3| Homo sapiens coagulation factor X (F10), mRNA Length = 1560 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 955 caccgccctcctcctgctcc 936
>emb|CR623031.1| full-length cDNA clone CS0DB007YC01 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1434 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 927 caccgccctcctcctgctcc 908
>emb|CR607773.1| full-length cDNA clone CS0DI076YA10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1467 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 937 caccgccctcctcctgctcc 918
>emb|CR603372.1| full-length cDNA clone CS0DI020YH13 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1450 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 936 caccgccctcctcctgctcc 917
>gb|AF503510.1| Homo sapiens coagulation factor X (F10) gene, complete cds Length = 29488 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 27767 caccgccctcctcctgctcc 27748
>dbj|AK154041.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430027H20 product:forkhead box O1, full insert sequence Length = 2532 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gctccccgcccgcggcggcg 60 |||||||||||||||||||| Sbjct: 40 gctccccgcccgcggcggcg 21
>gb|N00045.1|HUMFX8 Homo sapiens factor X precursor (F10) gene, exon 8 and complete cds Length = 624 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 45 caccgccctcctcctgctcc 26
>emb|AJ300478.1|LMA300478 Leptosphaeria maculans Tox+/A group LMR repeat region, Smex-2 marker Length = 1960 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 31 caccgccctcctcctgctcc 12
>gb|AC163765.3| Pan troglodytes BAC clone CH251-175G24 from chromosome unknown, complete sequence Length = 196942 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 173741 caccgccctcctcctgctcc 173760
>gb|AC108676.8| Homo sapiens 3 BAC RP11-384A12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 90502 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 ctcctcctgctccccgcccgcggcggcg 60 |||||||| |||| |||||||||||||| Sbjct: 29213 ctcctcctcctccgcgcccgcggcggcg 29186
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tctgggagcgctgtgccgcg 141 |||||||||||||||||||| Sbjct: 2720539 tctgggagcgctgtgccgcg 2720558
>gb|AY108329.1| Zea mays PCO128508 mRNA sequence Length = 920 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cctcggtccctccctcggtc 109 |||||||||||||||||||| Sbjct: 4 cctcggtccctccctcggtc 23
>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cctcggtccctccctcggtc 109 |||||||||||||||||||| Sbjct: 213731 cctcggtccctccctcggtc 213750
>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence Length = 323584 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cctcggtccctccctcggtc 109 |||||||||||||||||||| Sbjct: 201670 cctcggtccctccctcggtc 201689
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tttccgatgatgattccttt 344 |||||||||||||||||||| Sbjct: 4240340 tttccgatgatgattccttt 4240359
>gb|K03194.1|HUMFXM Human factor X mRNA, partial signal pept and complete mature pept cds Length = 1443 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 864 caccgccctcctcctgctcc 845
>gb|K01886.1|HUMFX Human factor X mRNA Length = 1126 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 547 caccgccctcctcctgctcc 528
>gb|M57285.1|HUMFACX Human coagulation factor X (F10) mRNA, complete cds Length = 1507 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 898 caccgccctcctcctgctcc 879
>gb|M22613.1|HUMCFX Human blood-coagulation factor X mRNA, complete cds Length = 1414 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caccgccctcctcctgctcc 45 |||||||||||||||||||| Sbjct: 835 caccgccctcctcctgctcc 816
>emb|AL808146.3| Mouse DNA sequence from clone RP23-52L10 on chromosome X, complete sequence Length = 159820 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 ccgccctcctcctgctccccgccc 51 ||||||||||||| |||||||||| Sbjct: 126896 ccgccctcctcctcctccccgccc 126873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,429,969 Number of Sequences: 3902068 Number of extensions: 3429969 Number of successful extensions: 74362 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74151 Number of HSP's gapped (non-prelim): 209 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)