ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45d04 |
|---|---|
| Clone Library Name | barley_pub |
>ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 100 bits (249), Expect = 8e-22 Identities = 46/58 (79%), Positives = 52/58 (89%) Frame = +1 Query: 235 EHAYSNILTSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 E+ + LTSLPKPGGGE+GK+YSLP+LNDPRID+LPYSIRILLESAIRNCD FQV K Sbjct: 4 ENPFKENLTSLPKPGGGEFGKYYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKK 61
>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 92.4 bits (228), Expect = 2e-19 Identities = 43/57 (75%), Positives = 50/57 (87%) Frame = +1 Query: 232 TEHAYSNILTSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQV 402 +E+ + +IL +L KP GGE+G +YSLPALNDPRIDKLPYSIRILLESAIRNCD FQV Sbjct: 3 SENPFRSILKALEKPDGGEFGNYYSLPALNDPRIDKLPYSIRILLESAIRNCDEFQV 59
>IREB2_RAT (Q62751) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 53.5 bits (127), Expect = 1e-07 Identities = 23/43 (53%), Positives = 31/43 (72%) Frame = +1 Query: 280 GGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 G KF+++P L + D LPYSIR+LLE+A+RNCDGF + K Sbjct: 19 GSSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKK 61
>IREB2_MOUSE (Q811J3) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 53.5 bits (127), Expect = 1e-07 Identities = 23/43 (53%), Positives = 31/43 (72%) Frame = +1 Query: 280 GGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 G KF+++P L + D LPYSIR+LLE+A+RNCDGF + K Sbjct: 19 GNSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKK 61
>IREB1_RAT (Q63270) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 52.0 bits (123), Expect = 3e-07 Identities = 23/39 (58%), Positives = 30/39 (76%) Frame = +1 Query: 295 KFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTKN 411 KF++L L D R +LP+SIR+LLE+A+RNCD F V KN Sbjct: 20 KFFNLNKLEDSRYGRLPFSIRVLLEAAVRNCDEFLVKKN 58
>IREB1_MOUSE (P28271) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 50.8 bits (120), Expect = 7e-07 Identities = 22/39 (56%), Positives = 30/39 (76%) Frame = +1 Query: 295 KFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTKN 411 +F++L L D R +LP+SIR+LLE+A+RNCD F V KN Sbjct: 20 RFFNLNKLEDSRYGRLPFSIRVLLEAAVRNCDEFLVKKN 58
>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/38 (60%), Positives = 29/38 (76%) Frame = +1 Query: 295 KFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 KF++L L D R +LP+SIR+LLE+AIRNCD F V K Sbjct: 20 KFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKK 57
>IREB1_CHICK (Q90875) Iron-responsive element binding protein (IRE-BP) (Iron| regulatory protein) (IRP) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/38 (60%), Positives = 29/38 (76%) Frame = +1 Query: 295 KFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 KF++L L D R +LP+SIR+LLE+AIRNCD F V K Sbjct: 20 KFFNLSKLEDVRYARLPFSIRVLLEAAIRNCDEFLVKK 57
>ACOC_CAEEL (Q23500) Probable aconitate hydratase, cytoplasmic (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 887 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/56 (42%), Positives = 37/56 (66%) Frame = +1 Query: 241 AYSNILTSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 A++N++ +L G K++ L LND R ++LP SI+ LLE+A+R+CD F V K Sbjct: 2 AFNNLIRNLAI--GDNVYKYFDLNGLNDARYNELPISIKYLLEAAVRHCDEFHVLK 55
>IREB1_RABIT (Q01059) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 46.6 bits (109), Expect = 1e-05 Identities = 21/38 (55%), Positives = 29/38 (76%) Frame = +1 Query: 295 KFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 KF++L L+ R +LP+SIR+LLE+A+RNCD F V K Sbjct: 20 KFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKK 57
>IREB2_HUMAN (P48200) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 45.1 bits (105), Expect = 4e-05 Identities = 21/38 (55%), Positives = 28/38 (73%) Frame = +1 Query: 295 KFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 KF+ + L + D LPYSIR+LLE+A+RNCDGF + K Sbjct: 24 KFFDVSKLGT-KYDVLPYSIRVLLEAAVRNCDGFLMKK 60
>ACON_BACSU (P09339) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 908 Score = 44.7 bits (104), Expect = 5e-05 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 3/45 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIRNCDGFQVTK 408 G+ +YSL AL D ++ KLPYSI++LLES +R DGF + K Sbjct: 22 GKTYHYYSLKALEDSGIGKVSKLPYSIKVLLESVLRQVDGFVIKK 66
>ACON_FRATH (Q2A1K3) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 937 Score = 39.3 bits (90), Expect = 0.002 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Frame = +1 Query: 256 LTSLPKPGGGEYGKFYSLPALNDPR---IDKLPYSIRILLESAIRNCDGFQVTKN 411 +T L G+ YSL L+ + +LPYSIR+LLE+ +RN DG++V ++ Sbjct: 7 ITKLQIEDKGKKYSLYSLKKLSQELGKDVTRLPYSIRVLLENQLRNIDGYKVKED 61
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIRNCDGFQVT 405 G+ +Y L L + +I KLPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLQTLEEKGLAKISKLPYSIRVLLESVLRQEDDFVIT 60
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIRNCDGFQVT 405 G+ +Y L L + +I KLPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLQTLEEKGLAKISKLPYSIRVLLESVLRQEDDFVIT 60
>ACON_STAAR (Q6GH55) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 38.1 bits (87), Expect = 0.005 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIRNCDGFQVT 405 G+ +Y L A+ + ++ KLPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLKAVEEQGITKVSKLPYSIRVLLESLLRQEDDFVIT 60
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = +1 Query: 280 GGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTKN 411 G + + Y L A+ P +KLPYS+++L E+ +RN DG +TK+ Sbjct: 44 GDKSYQIYRLDAV--PNTEKLPYSLKVLAENLLRNEDGSNITKD 85
>ACON_STAAW (P63434) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIRNCDGFQVT 405 G+ +Y L A+ + I K LPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDFVIT 60
>ACON_STAAS (Q6G9K9) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIRNCDGFQVT 405 G+ +Y L A+ + I K LPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDFVIT 60
>ACON_STAAN (P99148) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIRNCDGFQVT 405 G+ +Y L A+ + I K LPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDFVIT 60
>ACON_STAAM (P63433) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIRNCDGFQVT 405 G+ +Y L A+ + I K LPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDFVIT 60
>ACON_STAAC (Q5HG69) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIRNCDGFQVT 405 G+ +Y L A+ + I K LPYSIR+LLES +R D F +T Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDFVIT 60
>ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 888 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = +1 Query: 322 DPRIDKLPYSIRILLESAIRNCDGFQVTKN 411 D +D LPY+I+ILLES +R D VTKN Sbjct: 28 DIELDSLPYTIKILLESLLRKHDDICVTKN 57
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 36.2 bits (82), Expect = 0.019 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = +1 Query: 298 FYSLPALND---PRIDKLPYSIRILLESAIRNCDGFQVTK 408 +YSLP I KLPYS+++LLE+ +RN DG V K Sbjct: 22 YYSLPTAEKNGLKGISKLPYSMKVLLENLLRNEDGRSVKK 61
>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)| Length = 936 Score = 34.3 bits (77), Expect = 0.072 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = +1 Query: 298 FYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 +++L A+ P ++KLPYS+++L E+ +RN DG +T+ Sbjct: 23 YFALDAV--PGMEKLPYSLKVLGENLLRNEDGKNITR 57
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 33.5 bits (75), Expect = 0.12 Identities = 15/37 (40%), Positives = 27/37 (72%) Frame = +1 Query: 298 FYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 +Y+L A+ P ++KLPYS+++L E+ +R DG +T+ Sbjct: 23 YYALSAV--PGMEKLPYSLKVLGENLLRTEDGANITE 57
>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)| Length = 939 Score = 31.6 bits (70), Expect = 0.47 Identities = 14/36 (38%), Positives = 26/36 (72%) Frame = +1 Query: 298 FYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVT 405 +++L A+ P ++KLPYS+++L E+ +R DG +T Sbjct: 23 YFALSAV--PGMEKLPYSLKVLGENLLRTEDGANIT 56
>ACON_LEGPH (P37032) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) (Major iron-containing protein) (MICP) (IP210) Length = 891 Score = 31.2 bits (69), Expect = 0.61 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Frame = +1 Query: 283 GEYGKFYSLPALNDPR---IDKLPYSIRILLESAIRNCDGFQVT 405 G+ +YSL + I++LPYS+++LLE+ +R DG VT Sbjct: 18 GKTYNYYSLKEAENKHFKGINRLPYSLKVLLENLLRFEDGNTVT 61
>ACON1_ECOLI (P25516) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1)| (Aconitase 1) Length = 890 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 4/41 (9%) Frame = +1 Query: 298 FYSLP----ALNDPRIDKLPYSIRILLESAIRNCDGFQVTK 408 +YSLP +L D I +LP S+++LLE+ +R DG VT+ Sbjct: 21 YYSLPLAAKSLGD--ITRLPKSLKVLLENLLRWQDGNSVTE 59
>ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)| Length = 934 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/36 (36%), Positives = 25/36 (69%) Frame = +1 Query: 298 FYSLPALNDPRIDKLPYSIRILLESAIRNCDGFQVT 405 +++L A+ ++KLPYS+++L E+ +R DG +T Sbjct: 23 YFALSAVKG--MEKLPYSLKVLGENLLRTEDGANIT 56
>HYIN1_BRAJA (P59385) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 524 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 343 AAYRSLDHLVQEGCRISHIHHPRA*GGWSKYC 248 A R+ DHL + G R+S + P G W +C Sbjct: 334 ALRRAADHLERSGYRVSEVEVPDINGVWQTWC 365
>PHD1_YEAST (P36093) Putative transcription factor PHD1| Length = 366 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = +1 Query: 232 TEHAYSNIL---TSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRN 384 T +AY+N+ TS + G Y ++Y++P P+ + PY +L + I N Sbjct: 53 TPNAYANVAQLATSPTQAKSGYYCRYYAVPFPTYPQQPQSPYQQAVLPYATIPN 106
>ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 878 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = +1 Query: 331 IDKLPYSIRILLESAIR 381 + KLPYS+R+LLE+ +R Sbjct: 36 LKKLPYSLRVLLENVLR 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,126,462 Number of Sequences: 219361 Number of extensions: 619550 Number of successful extensions: 879 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 879 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
