Clone Name | bastl45d04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_480473.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2697 Score = 232 bits (117), Expect = 7e-58 Identities = 141/149 (94%) Strand = Plus / Plus Query: 253 attttgaccagcctccctaagcccgggggtggtgaatatgggaaattctacagccttcct 312 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 28 attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 87 Query: 313 gcactaaatgatccaaggatcgataagctgccctactctatccgtattcttctggagtca 372 |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 88 gcactaaatgatcccaggattgataagctgccctactctatccgtattcttctagagtca 147 Query: 373 gctatccgtaactgtgatggcttccaagt 401 |||||||| ||||||||| ||||||||| Sbjct: 148 gctatccgcaactgtgataacttccaagt 176
>gb|AY104770.1| Zea mays PCO074909 mRNA sequence Length = 3628 Score = 230 bits (116), Expect = 3e-57 Identities = 182/204 (89%) Strand = Plus / Plus Query: 208 cagcgcaggatggccgcctcaggtactgagcatgcctacagcaatattttgaccagcctc 267 |||||||||||||| || || ||||| |||||||| || ||||| ||||||||||| Sbjct: 318 cagcgcaggatggcaacccaagctactgtgcatgccttcaaggatattctgaccagcctc 377 Query: 268 cctaagcccgggggtggtgaatatgggaaattctacagccttcctgcactaaatgatcca 327 |||||||| || |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 378 cctaagcctggaggtggtgaatatggaaagttctacagccttcctgcactaaatgatcca 437 Query: 328 aggatcgataagctgccctactctatccgtattcttctggagtcagctatccgtaactgt 387 ||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 438 aggattgataagctgccgtactccgtccgtattcttcttgagtcagctatccgtaactgt 497 Query: 388 gatggcttccaagttaccaagaat 411 ||| ||||||||||||||||||| Sbjct: 498 gataacttccaagttaccaagaat 521
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 135 bits (68), Expect = 1e-28 Identities = 77/80 (96%) Strand = Plus / Minus Query: 253 attttgaccagcctccctaagcccgggggtggtgaatatgggaaattctacagccttcct 312 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 5327086 attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 5327027 Query: 313 gcactaaatgatccaaggat 332 |||||||||||||| ||||| Sbjct: 5327026 gcactaaatgatcccaggat 5327007 Score = 103 bits (52), Expect = 4e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 334 gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | Sbjct: 5326598 gataagctgccctactctatccgtattcttctagagtcagctatccgcaactgtgataac 5326539 Query: 394 ttccaagt 401 |||||||| Sbjct: 5326538 ttccaagt 5326531
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 135 bits (68), Expect = 1e-28 Identities = 77/80 (96%) Strand = Plus / Minus Query: 253 attttgaccagcctccctaagcccgggggtggtgaatatgggaaattctacagccttcct 312 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 118674 attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 118615 Query: 313 gcactaaatgatccaaggat 332 |||||||||||||| ||||| Sbjct: 118614 gcactaaatgatcccaggat 118595 Score = 103 bits (52), Expect = 4e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 334 gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | Sbjct: 118186 gataagctgccctactctatccgtattcttctagagtcagctatccgcaactgtgataac 118127 Query: 394 ttccaagt 401 |||||||| Sbjct: 118126 ttccaagt 118119
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 115 bits (58), Expect = 1e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 231 tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 290 |||| ||||||||| || ||||||||| ||||||||| ||||| || ||||||||||| Sbjct: 11279371 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 11279430 Query: 291 tgggaaattctacagccttcctgcactaaatgatccaaggat 332 |||||| || |||||||||||||||||||||||||||||||| Sbjct: 11279431 tgggaagttttacagccttcctgcactaaatgatccaaggat 11279472 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393 |||||||| || ||||||||| || |||| ||||||||||||||||| || ||||| | | Sbjct: 11281410 gataagcttccttactctatctgtgttctcctggagtcagctatccgcaattgtgacgac 11281469 Query: 394 ttccaagttaccaagaa 410 || |||||||| ||||| Sbjct: 11281470 ttgcaagttacaaagaa 11281486
>dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1435D02 Length = 131152 Score = 115 bits (58), Expect = 1e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 231 tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 290 |||| ||||||||| || ||||||||| ||||||||| ||||| || ||||||||||| Sbjct: 94670 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 94729 Query: 291 tgggaaattctacagccttcctgcactaaatgatccaaggat 332 |||||| || |||||||||||||||||||||||||||||||| Sbjct: 94730 tgggaagttttacagccttcctgcactaaatgatccaaggat 94771 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393 |||||||| || ||||||||| || |||| ||||||||||||||||| || ||||| | | Sbjct: 96709 gataagcttccttactctatctgtgttctcctggagtcagctatccgcaattgtgacgac 96768 Query: 394 ttccaagttaccaagaa 410 || |||||||| ||||| Sbjct: 96769 ttgcaagttacaaagaa 96785
>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0042E12 Length = 164688 Score = 115 bits (58), Expect = 1e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 231 tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 290 |||| ||||||||| || ||||||||| ||||||||| ||||| || ||||||||||| Sbjct: 154193 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 154252 Query: 291 tgggaaattctacagccttcctgcactaaatgatccaaggat 332 |||||| || |||||||||||||||||||||||||||||||| Sbjct: 154253 tgggaagttttacagccttcctgcactaaatgatccaaggat 154294 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393 |||||||| || ||||||||| || |||| ||||||||||||||||| || ||||| | | Sbjct: 156232 gataagcttccttactctatctgtgttctcctggagtcagctatccgcaattgtgacgac 156291 Query: 394 ttccaagttaccaagaa 410 || |||||||| ||||| Sbjct: 156292 ttgcaagttacaaagaa 156308
>gb|AY250116.1| Lycopersicon pennellii aconitase mRNA, partial cds Length = 2694 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 310 cctgcactaaatgatccaaggatcgataagctgccctactctatccgtattcttctggag 369 ||||| || |||||||| ||||| || ||||| || ||||||||| | ||||||||||| Sbjct: 85 cctgctctcaatgatcccaggattgacaagctaccatactctatcaggattcttctggaa 144 Query: 370 tcagctatccgtaactgtga 389 ||||| |||||||| ||||| Sbjct: 145 tcagcaatccgtaattgtga 164
>gb|AY050485.1| Prunus avium putative aconitase mRNA, complete cds Length = 3146 Score = 44.1 bits (22), Expect = 0.35 Identities = 88/110 (80%) Strand = Plus / Plus Query: 280 ggtggtgaatatgggaaattctacagccttcctgcactaaatgatccaaggatcgataag 339 |||||||||| || |||| ||||||| | || || || |||||||| || || || ||| Sbjct: 173 ggtggtgaattcggaaaatactacagcttaccagctctcaatgatcctagaattgacaag 232 Query: 340 ctgccctactctatccgtattcttctggagtcagctatccgtaactgtga 389 ||||| | ||||||| || ||||| || ||||| |||||||||||||| Sbjct: 233 ctgccattctctatcaagatccttcttgaatcagcaatccgtaactgtga 282
>ref|NM_001031454.1| Gallus gallus iron-responsive element binding protein 2 (IREB2), mRNA Length = 3276 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 atccgtaactgtgatggcttc 396 ||||||||||||||||||||| Sbjct: 213 atccgtaactgtgatggcttc 233
>emb|CR933541.6| Mouse DNA sequence from clone DN-97M20 on chromosome 11, complete sequence Length = 176646 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcaggt 231 ||||| ||||||||||||||||||| Sbjct: 135447 gcagcccaggatggccgcctcaggt 135471
>emb|AL596185.12| Mouse DNA sequence from clone RP23-172M21 on chromosome 11 Contains the 5' end of the Centb1 gene for centaurin beta 1, the gene for a novel protein similar to protein phosphatase 1 regulatory (inhibitor) subunit 2 Ppp1r2, a novel gene, the Gps2 gene for G protein pathway suppressor 2, the Eif5a gene for eukaryotic translation initiation factor 5A, the Ybx2 gene for Y box protein 2, the Slc2a4 gene for solute carrier family 2 (facilitated glucose transporter) member 4, a non-muscle cofilin 1 (Cfl1) pseudogene, the Cldn7 gene for claudin 7, the Rai12 gene for retinoic acid induced 12, the Dullard gene for Dullard homolog (Xenopus laevis) (novel NLI interacting factor-like phosphatase), the gene for novel PHD-finger protein JUNE1, the Dvl2 gene for dishevelled 2 dsh homolog (Drosophila), the Acadvl gene for acyl-Coenzyme A dehydrogenase very long chain, the Dlgh4 gene for discs large homolog 4 (Drosophila), the Asgr1 and Asgr2 genes for asialoglycoprotein receptor 1 and 2, a ribosomal protein L26 (Rpl26) pseudogene, the 5' end of the Mgl2 gene for macrophage galactose N-acetyl-galactosamine specific lectin 2 and nine CpG islands, complete sequence Length = 248203 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcaggt 231 ||||| ||||||||||||||||||| Sbjct: 142614 gcagcccaggatggccgcctcaggt 142638
>emb|AJ719680.1| Gallus gallus mRNA for hypothetical protein, clone 5d21 Length = 3276 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 atccgtaactgtgatggcttc 396 ||||||||||||||||||||| Sbjct: 213 atccgtaactgtgatggcttc 233
>dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-708L7, complete sequence Length = 176273 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 ggtcaggggcaggggcagcgt 182 ||||||||||||||||||||| Sbjct: 161004 ggtcaggggcaggggcagcgt 161024
>dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-762O23, complete sequence Length = 168922 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 ggtcaggggcaggggcagcgt 182 ||||||||||||||||||||| Sbjct: 76483 ggtcaggggcaggggcagcgt 76503
>gb|AY207049.1|AY207048S2 Mus musculus postsynaptic density-95 gene, exons 2 through 8 and partial cds; alternatively spliced Length = 5804 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcaggt 231 ||||| ||||||||||||||||||| Sbjct: 4047 gcagcccaggatggccgcctcaggt 4071
>ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.15), mRNA Length = 645 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ctcgccgtcgtccgccgcgg 163 |||||||||||||||||||| Sbjct: 88 ctcgccgtcgtccgccgcgg 107
>ref|NM_007864.1| Mus musculus discs, large homolog 4 (Drosophila) (Dlgh4), mRNA Length = 2338 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcagg 230 ||||| |||||||||||||||||| Sbjct: 370 gcagcccaggatggccgcctcagg 393
>ref|NM_019621.1| Rattus norvegicus discs, large homolog 4 (Drosophila) (Dlgh4), mRNA Length = 3083 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcagg 230 ||||| |||||||||||||||||| Sbjct: 370 gcagcccaggatggccgcctcagg 393
>gb|BC014807.1| Mus musculus discs, large homolog 4 (Drosophila), mRNA (cDNA clone MGC:25332 IMAGE:4501403), complete cds Length = 3076 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcagg 230 ||||| |||||||||||||||||| Sbjct: 364 gcagcccaggatggccgcctcagg 387
>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island PAI-Region-2, partial sequence Length = 39776 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tgccgcccagcggtcccagc 208 |||||||||||||||||||| Sbjct: 12471 tgccgcccagcggtcccagc 12452
>emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chromosome 1p32.1-33 Contains the 3' ends of genes FLJ34719 and KIAA0191, complete sequence Length = 127006 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 gaatatgggaaattctacag 305 |||||||||||||||||||| Sbjct: 13214 gaatatgggaaattctacag 13233
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccagcggtcccagcagcgca 214 |||||||||||||||||||| Sbjct: 580878 ccagcggtcccagcagcgca 580897
>gb|DQ119347.1| Medicago sativa villin 3 mRNA, partial cds Length = 532 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tgaatatgggaaattctaca 304 |||||||||||||||||||| Sbjct: 54 tgaatatgggaaattctaca 73
>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0015I18, from chromosome 10, complete sequence Length = 161479 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ctcgccgtcgtccgccgcgg 163 |||||||||||||||||||| Sbjct: 61229 ctcgccgtcgtccgccgcgg 61210
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ctcgccgtcgtccgccgcgg 163 |||||||||||||||||||| Sbjct: 9305188 ctcgccgtcgtccgccgcgg 9305207
>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12, complete sequence Length = 122262 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ctcgccgtcgtccgccgcgg 163 |||||||||||||||||||| Sbjct: 23031 ctcgccgtcgtccgccgcgg 23050
>ref|XM_579440.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_019621 (LOC497670), mRNA Length = 3070 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcagg 230 ||||| |||||||||||||||||| Sbjct: 370 gcagcccaggatggccgcctcagg 393
>emb|X66474.1|RNSAP90AM R.norvegicus mRNA for guanylate kinase Length = 2447 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcagg 230 ||||| |||||||||||||||||| Sbjct: 515 gcagcccaggatggccgcctcagg 538
>dbj|D50621.1|MUSPSD95SP Mus musculus mRNA for PSD-95/SAP90A, complete cds Length = 2338 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcagg 230 ||||| |||||||||||||||||| Sbjct: 370 gcagcccaggatggccgcctcagg 393
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gcggtgctcgccgtcgtccg 157 |||||||||||||||||||| Sbjct: 1447061 gcggtgctcgccgtcgtccg 1447042
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ctcgccgtcgtccgccgcgg 163 |||||||||||||||||||| Sbjct: 9310327 ctcgccgtcgtccgccgcgg 9310346
>gb|M96853.1|RATPSD95A Rat postsynaptic density protein (PSD-95), homologue of discs-large tumor supressor protein mRNA, complete cds Length = 3083 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcagcgcaggatggccgcctcagg 230 ||||| |||||||||||||||||| Sbjct: 370 gcagcccaggatggccgcctcagg 393 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,005,722 Number of Sequences: 3902068 Number of extensions: 2005722 Number of successful extensions: 47097 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46942 Number of HSP's gapped (non-prelim): 155 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)