ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_480473.1| Oryza sativa (japonica cultivar-group), mRNA 232 7e-58
2gb|AY104770.1| Zea mays PCO074909 mRNA sequence 230 3e-57
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
4dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
6dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
7dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
8gb|AY250116.1| Lycopersicon pennellii aconitase mRNA, partial cds 64 4e-07
9gb|AY050485.1| Prunus avium putative aconitase mRNA, complete cds 44 0.35
10ref|NM_001031454.1| Gallus gallus iron-responsive element bindin... 42 1.4
11emb|CR933541.6| Mouse DNA sequence from clone DN-97M20 on chromo... 42 1.4
12emb|AL596185.12| Mouse DNA sequence from clone RP23-172M21 on ch... 42 1.4
13emb|AJ719680.1| Gallus gallus mRNA for hypothetical protein, clo... 42 1.4
14dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.4
15dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.4
16gb|AY207049.1|AY207048S2 Mus musculus postsynaptic density-95 ge... 42 1.4
17ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.5
18ref|NM_007864.1| Mus musculus discs, large homolog 4 (Drosophila... 40 5.5
19ref|NM_019621.1| Rattus norvegicus discs, large homolog 4 (Droso... 40 5.5
20gb|BC014807.1| Mus musculus discs, large homolog 4 (Drosophila),... 40 5.5
21gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenici... 40 5.5
22emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chro... 40 5.5
23gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.5
24gb|DQ119347.1| Medicago sativa villin 3 mRNA, partial cds 40 5.5
25gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.5
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
27gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
28ref|XM_579440.1| PREDICTED: Rattus norvegicus hypothetical gene ... 40 5.5
29emb|X66474.1|RNSAP90AM R.norvegicus mRNA for guanylate kinase 40 5.5
30dbj|D50621.1|MUSPSD95SP Mus musculus mRNA for PSD-95/SAP90A, com... 40 5.5
31gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.5
32gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
33gb|M96853.1|RATPSD95A Rat postsynaptic density protein (PSD-95),... 40 5.5

>ref|XM_480473.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2697

 Score =  232 bits (117), Expect = 7e-58
 Identities = 141/149 (94%)
 Strand = Plus / Plus

                                                                       
Query: 253 attttgaccagcctccctaagcccgggggtggtgaatatgggaaattctacagccttcct 312
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 28  attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 87

                                                                       
Query: 313 gcactaaatgatccaaggatcgataagctgccctactctatccgtattcttctggagtca 372
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 88  gcactaaatgatcccaggattgataagctgccctactctatccgtattcttctagagtca 147

                                        
Query: 373 gctatccgtaactgtgatggcttccaagt 401
           |||||||| |||||||||  |||||||||
Sbjct: 148 gctatccgcaactgtgataacttccaagt 176



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>gb|AY104770.1| Zea mays PCO074909 mRNA sequence
          Length = 3628

 Score =  230 bits (116), Expect = 3e-57
 Identities = 182/204 (89%)
 Strand = Plus / Plus

                                                                       
Query: 208 cagcgcaggatggccgcctcaggtactgagcatgcctacagcaatattttgaccagcctc 267
           ||||||||||||||  ||  || ||||| |||||||| ||   ||||| |||||||||||
Sbjct: 318 cagcgcaggatggcaacccaagctactgtgcatgccttcaaggatattctgaccagcctc 377

                                                                       
Query: 268 cctaagcccgggggtggtgaatatgggaaattctacagccttcctgcactaaatgatcca 327
           |||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 378 cctaagcctggaggtggtgaatatggaaagttctacagccttcctgcactaaatgatcca 437

                                                                       
Query: 328 aggatcgataagctgccctactctatccgtattcttctggagtcagctatccgtaactgt 387
           ||||| ||||||||||| |||||  ||||||||||||| |||||||||||||||||||||
Sbjct: 438 aggattgataagctgccgtactccgtccgtattcttcttgagtcagctatccgtaactgt 497

                                   
Query: 388 gatggcttccaagttaccaagaat 411
           |||  |||||||||||||||||||
Sbjct: 498 gataacttccaagttaccaagaat 521



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  135 bits (68), Expect = 1e-28
 Identities = 77/80 (96%)
 Strand = Plus / Minus

                                                                           
Query: 253     attttgaccagcctccctaagcccgggggtggtgaatatgggaaattctacagccttcct 312
               |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5327086 attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 5327027

                                   
Query: 313     gcactaaatgatccaaggat 332
               |||||||||||||| |||||
Sbjct: 5327026 gcactaaatgatcccaggat 5327007



 Score =  103 bits (52), Expect = 4e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                           
Query: 334     gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393
               |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||  |
Sbjct: 5326598 gataagctgccctactctatccgtattcttctagagtcagctatccgcaactgtgataac 5326539

                       
Query: 394     ttccaagt 401
               ||||||||
Sbjct: 5326538 ttccaagt 5326531



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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0610E02
          Length = 135816

 Score =  135 bits (68), Expect = 1e-28
 Identities = 77/80 (96%)
 Strand = Plus / Minus

                                                                          
Query: 253    attttgaccagcctccctaagcccgggggtggtgaatatgggaaattctacagccttcct 312
              |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 118674 attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 118615

                                  
Query: 313    gcactaaatgatccaaggat 332
              |||||||||||||| |||||
Sbjct: 118614 gcactaaatgatcccaggat 118595



 Score =  103 bits (52), Expect = 4e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                          
Query: 334    gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393
              |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||  |
Sbjct: 118186 gataagctgccctactctatccgtattcttctagagtcagctatccgcaactgtgataac 118127

                      
Query: 394    ttccaagt 401
              ||||||||
Sbjct: 118126 ttccaagt 118119



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                            
Query: 231      tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 290
                |||| ||||||||| ||  |||||||||  ||||||||| ||||| || |||||||||||
Sbjct: 11279371 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 11279430

                                                          
Query: 291      tgggaaattctacagccttcctgcactaaatgatccaaggat 332
                |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 11279431 tgggaagttttacagccttcctgcactaaatgatccaaggat 11279472



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                            
Query: 334      gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393
                |||||||| || ||||||||| || |||| ||||||||||||||||| || ||||| | |
Sbjct: 11281410 gataagcttccttactctatctgtgttctcctggagtcagctatccgcaattgtgacgac 11281469

                                 
Query: 394      ttccaagttaccaagaa 410
                || |||||||| |||||
Sbjct: 11281470 ttgcaagttacaaagaa 11281486



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>dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1435D02
          Length = 131152

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                         
Query: 231   tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 290
             |||| ||||||||| ||  |||||||||  ||||||||| ||||| || |||||||||||
Sbjct: 94670 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 94729

                                                       
Query: 291   tgggaaattctacagccttcctgcactaaatgatccaaggat 332
             |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 94730 tgggaagttttacagccttcctgcactaaatgatccaaggat 94771



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                         
Query: 334   gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393
             |||||||| || ||||||||| || |||| ||||||||||||||||| || ||||| | |
Sbjct: 96709 gataagcttccttactctatctgtgttctcctggagtcagctatccgcaattgtgacgac 96768

                              
Query: 394   ttccaagttaccaagaa 410
             || |||||||| |||||
Sbjct: 96769 ttgcaagttacaaagaa 96785



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>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0042E12
          Length = 164688

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                          
Query: 231    tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 290
              |||| ||||||||| ||  |||||||||  ||||||||| ||||| || |||||||||||
Sbjct: 154193 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 154252

                                                        
Query: 291    tgggaaattctacagccttcctgcactaaatgatccaaggat 332
              |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 154253 tgggaagttttacagccttcctgcactaaatgatccaaggat 154294



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                          
Query: 334    gataagctgccctactctatccgtattcttctggagtcagctatccgtaactgtgatggc 393
              |||||||| || ||||||||| || |||| ||||||||||||||||| || ||||| | |
Sbjct: 156232 gataagcttccttactctatctgtgttctcctggagtcagctatccgcaattgtgacgac 156291

                               
Query: 394    ttccaagttaccaagaa 410
              || |||||||| |||||
Sbjct: 156292 ttgcaagttacaaagaa 156308



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>gb|AY250116.1| Lycopersicon pennellii aconitase mRNA, partial cds
          Length = 2694

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 310 cctgcactaaatgatccaaggatcgataagctgccctactctatccgtattcttctggag 369
           ||||| || |||||||| ||||| || ||||| || ||||||||| | ||||||||||| 
Sbjct: 85  cctgctctcaatgatcccaggattgacaagctaccatactctatcaggattcttctggaa 144

                               
Query: 370 tcagctatccgtaactgtga 389
           ||||| |||||||| |||||
Sbjct: 145 tcagcaatccgtaattgtga 164



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>gb|AY050485.1| Prunus avium putative aconitase mRNA, complete cds
          Length = 3146

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 88/110 (80%)
 Strand = Plus / Plus

                                                                       
Query: 280 ggtggtgaatatgggaaattctacagccttcctgcactaaatgatccaaggatcgataag 339
           ||||||||||  || |||| ||||||| | || || || |||||||| || || || |||
Sbjct: 173 ggtggtgaattcggaaaatactacagcttaccagctctcaatgatcctagaattgacaag 232

                                                             
Query: 340 ctgccctactctatccgtattcttctggagtcagctatccgtaactgtga 389
           ||||| | |||||||   || ||||| || ||||| ||||||||||||||
Sbjct: 233 ctgccattctctatcaagatccttcttgaatcagcaatccgtaactgtga 282



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>ref|NM_001031454.1| Gallus gallus iron-responsive element binding protein 2 (IREB2),
           mRNA
          Length = 3276

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 376 atccgtaactgtgatggcttc 396
           |||||||||||||||||||||
Sbjct: 213 atccgtaactgtgatggcttc 233



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>emb|CR933541.6| Mouse DNA sequence from clone DN-97M20 on chromosome 11, complete
              sequence
          Length = 176646

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 207    gcagcgcaggatggccgcctcaggt 231
              ||||| |||||||||||||||||||
Sbjct: 135447 gcagcccaggatggccgcctcaggt 135471



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>emb|AL596185.12| Mouse DNA sequence from clone RP23-172M21 on chromosome 11 Contains the
              5' end of the Centb1 gene for centaurin beta 1, the gene
              for a novel protein similar to protein phosphatase 1
              regulatory (inhibitor) subunit 2 Ppp1r2, a novel gene, the
              Gps2 gene for G protein pathway suppressor 2, the Eif5a
              gene for eukaryotic translation initiation factor 5A, the
              Ybx2 gene for Y box protein 2, the Slc2a4 gene for solute
              carrier family 2 (facilitated glucose transporter) member
              4, a non-muscle cofilin 1 (Cfl1) pseudogene, the Cldn7 gene
              for claudin 7, the Rai12 gene for retinoic acid induced 12,
              the Dullard gene for Dullard homolog (Xenopus laevis)
              (novel NLI interacting factor-like phosphatase), the gene
              for novel PHD-finger protein JUNE1, the Dvl2 gene for
              dishevelled 2 dsh homolog (Drosophila), the Acadvl gene for
              acyl-Coenzyme A dehydrogenase very long chain, the Dlgh4
              gene for discs large homolog 4 (Drosophila), the Asgr1 and
              Asgr2 genes for asialoglycoprotein receptor 1 and 2, a
              ribosomal protein L26 (Rpl26) pseudogene, the 5' end of the
              Mgl2 gene for macrophage galactose N-acetyl-galactosamine
              specific lectin 2 and nine CpG islands, complete sequence
          Length = 248203

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 207    gcagcgcaggatggccgcctcaggt 231
              ||||| |||||||||||||||||||
Sbjct: 142614 gcagcccaggatggccgcctcaggt 142638



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>emb|AJ719680.1| Gallus gallus mRNA for hypothetical protein, clone 5d21
          Length = 3276

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 376 atccgtaactgtgatggcttc 396
           |||||||||||||||||||||
Sbjct: 213 atccgtaactgtgatggcttc 233



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>dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-708L7, complete
              sequence
          Length = 176273

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 162    ggtcaggggcaggggcagcgt 182
              |||||||||||||||||||||
Sbjct: 161004 ggtcaggggcaggggcagcgt 161024



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>dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-762O23, complete
             sequence
          Length = 168922

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   ggtcaggggcaggggcagcgt 182
             |||||||||||||||||||||
Sbjct: 76483 ggtcaggggcaggggcagcgt 76503



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>gb|AY207049.1|AY207048S2 Mus musculus postsynaptic density-95 gene, exons 2 through 8 and
            partial cds; alternatively spliced
          Length = 5804

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  gcagcgcaggatggccgcctcaggt 231
            ||||| |||||||||||||||||||
Sbjct: 4047 gcagcccaggatggccgcctcaggt 4071



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>ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015I18.15), mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 ctcgccgtcgtccgccgcgg 163
           ||||||||||||||||||||
Sbjct: 88  ctcgccgtcgtccgccgcgg 107



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>ref|NM_007864.1| Mus musculus discs, large homolog 4 (Drosophila) (Dlgh4), mRNA
          Length = 2338

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 gcagcgcaggatggccgcctcagg 230
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393



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>ref|NM_019621.1| Rattus norvegicus discs, large homolog 4 (Drosophila) (Dlgh4), mRNA
          Length = 3083

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 gcagcgcaggatggccgcctcagg 230
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393



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>gb|BC014807.1| Mus musculus discs, large homolog 4 (Drosophila), mRNA (cDNA clone
           MGC:25332 IMAGE:4501403), complete cds
          Length = 3076

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 gcagcgcaggatggccgcctcagg 230
           ||||| ||||||||||||||||||
Sbjct: 364 gcagcccaggatggccgcctcagg 387



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>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39776

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tgccgcccagcggtcccagc 208
             ||||||||||||||||||||
Sbjct: 12471 tgccgcccagcggtcccagc 12452



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>emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chromosome 1p32.1-33
             Contains the 3' ends of genes FLJ34719 and KIAA0191,
             complete sequence
          Length = 127006

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   gaatatgggaaattctacag 305
             ||||||||||||||||||||
Sbjct: 13214 gaatatgggaaattctacag 13233



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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    ccagcggtcccagcagcgca 214
              ||||||||||||||||||||
Sbjct: 580878 ccagcggtcccagcagcgca 580897



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>gb|DQ119347.1| Medicago sativa villin 3 mRNA, partial cds
          Length = 532

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 285 tgaatatgggaaattctaca 304
           ||||||||||||||||||||
Sbjct: 54  tgaatatgggaaattctaca 73



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>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0015I18, from chromosome 10, complete sequence
          Length = 161479

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   ctcgccgtcgtccgccgcgg 163
             ||||||||||||||||||||
Sbjct: 61229 ctcgccgtcgtccgccgcgg 61210



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     ctcgccgtcgtccgccgcgg 163
               ||||||||||||||||||||
Sbjct: 9305188 ctcgccgtcgtccgccgcgg 9305207



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>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0011F12, complete sequence
          Length = 122262

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   ctcgccgtcgtccgccgcgg 163
             ||||||||||||||||||||
Sbjct: 23031 ctcgccgtcgtccgccgcgg 23050



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>ref|XM_579440.1| PREDICTED: Rattus norvegicus hypothetical gene supported by
           NM_019621 (LOC497670), mRNA
          Length = 3070

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 gcagcgcaggatggccgcctcagg 230
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393



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>emb|X66474.1|RNSAP90AM R.norvegicus mRNA for guanylate kinase
          Length = 2447

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 gcagcgcaggatggccgcctcagg 230
           ||||| ||||||||||||||||||
Sbjct: 515 gcagcccaggatggccgcctcagg 538



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>dbj|D50621.1|MUSPSD95SP Mus musculus mRNA for PSD-95/SAP90A, complete cds
          Length = 2338

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 gcagcgcaggatggccgcctcagg 230
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 138     gcggtgctcgccgtcgtccg 157
               ||||||||||||||||||||
Sbjct: 1447061 gcggtgctcgccgtcgtccg 1447042



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     ctcgccgtcgtccgccgcgg 163
               ||||||||||||||||||||
Sbjct: 9310327 ctcgccgtcgtccgccgcgg 9310346



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>gb|M96853.1|RATPSD95A Rat postsynaptic density protein (PSD-95), homologue of discs-large
           tumor supressor protein mRNA, complete cds
          Length = 3083

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 207 gcagcgcaggatggccgcctcagg 230
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,005,722
Number of Sequences: 3902068
Number of extensions: 2005722
Number of successful extensions: 47097
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46942
Number of HSP's gapped (non-prelim): 155
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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