ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45d01 |
|---|---|
| Clone Library Name | barley_pub |
>TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Importin 12)| Length = 975 Score = 65.9 bits (159), Expect = 5e-11 Identities = 31/81 (38%), Positives = 52/81 (64%) Frame = +1 Query: 211 VKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 390 V +A+ ALYH PD S + A WL + Q ++ AW+++D LL ++E+ F +QT++ Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQTMKM 69 Query: 391 KVQRDFEELPSEAFRTIADSL 453 K+Q F ELP+++ ++ DSL Sbjct: 70 KIQTSFYELPTDSHASLRDSL 90
>TNPO3_MOUSE (Q6P2B1) Transportin 3| Length = 923 Score = 65.9 bits (159), Expect = 5e-11 Identities = 31/81 (38%), Positives = 52/81 (64%) Frame = +1 Query: 211 VKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 390 V +A+ ALYH PD S + A WL + Q ++ AW+++D LL ++E+ F +QT++ Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQTMKM 69 Query: 391 KVQRDFEELPSEAFRTIADSL 453 K+Q F ELP+++ ++ DSL Sbjct: 70 KIQTSFYELPTDSHASLRDSL 90
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 64.3 bits (155), Expect = 1e-10 Identities = 32/85 (37%), Positives = 51/85 (60%) Frame = +1 Query: 208 TVKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLR 387 T+ ALA LY + D + A+ +L++FQ + AWQ+ S+L+ + S++E +F +QTLR Sbjct: 3 TLLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFSILNQDDSSIEAKLFAAQTLR 62 Query: 388 SKVQRDFEELPSEAFRTIADSLYGL 462 K+ DF +LP E +SL L Sbjct: 63 QKIVYDFHQLPKETHIEFRNSLLQL 87
>IPO13_MOUSE (Q8K0C1) Importin-13 (Imp13)| Length = 963 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Frame = +1 Query: 160 EEEVGFGADMEAQA----TATVKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADS 327 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIDNKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 328 LLHDESSNLETLMFCSQTLRSKVQRDFEELPSEAFRTIADSLY 456 LL + E F + L K+ R + ++P++ + ++ L+ Sbjct: 65 LLQPDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLKAQLF 106
>IPO13_HUMAN (O94829) Importin-13 (Imp13) (Ran-binding protein 13) (RanBP13)| (Karyopherin 13) (Kap13) Length = 963 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = +1 Query: 211 VKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 390 V++AL LY+ P+ + A +WL + Q + AW + LL + E F + L Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-EIQYFGASALHI 84 Query: 391 KVQRDFEELPSEAFRTIADSLY 456 K+ R + ++P++ + ++ L+ Sbjct: 85 KISRYWSDIPTDQYESLKAQLF 106
>MTR10_YEAST (Q99189) mRNA transport regulator MTR10| Length = 972 Score = 39.3 bits (90), Expect = 0.005 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Frame = +1 Query: 187 MEAQATATVKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADSLLHDE---SSNLE 357 M+ + ++ AL + + A ++L++FQ + AW + + +L E ++ LE Sbjct: 1 MDNLQVSDIETALQCISSTASQDDKNKALQFLEQFQRSTVAWSICNEILSKEDPTNALLE 60 Query: 358 TLMFCSQTLRSKVQRDFEELPSEAFRTIADSLYGLL 465 +F +QTLR+KV D +L + DSL LL Sbjct: 61 LNIFAAQTLRNKVTYDLSQLENN-LPQFKDSLLTLL 95
>IPO13_RAT (Q9JM04) Importin-13 (Imp13) (Late gestation lung 2 protein)| Length = 963 Score = 38.9 bits (89), Expect = 0.007 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Frame = +1 Query: 160 EEEVGFGADMEAQA----TATVKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADS 327 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 328 LLHDESSNLETLMFCSQTLRSKVQRDFEELPSEAFRTI 441 LL + E F + L K+ R + ++P++ + ++ Sbjct: 65 LLQPDKVP-EIQYFGASALHIKISRYWSDIPTDQYESL 101
>DYHC_FUSSO (P78716) Dynein heavy chain, cytosolic (DYHC)| Length = 4349 Score = 33.9 bits (76), Expect = 0.22 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 18/140 (12%) Frame = +1 Query: 76 IAGRRSSTPRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATVKEALAALYH----- 240 +A +R + RK++++E + V + A+A V+EA A++ + Sbjct: 3253 VADQREAEQRKNTSLEIQANLEKQEAEVASRKKVVLEDLAKAEPAVEEAKASVSNIKRQH 3312 Query: 241 --------HPDDSIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMF-----CSQT 381 +P +R A D H ++ W+ +L + LMF ++ Sbjct: 3313 LTEVRSMGNPPQGVRLAMDAVCTLLGHRINDWKAVQGILRKDDFIASILMFDNAKQMTKG 3372 Query: 382 LRSKVQRDFEELPSEAFRTI 441 LR+K++ DF P F + Sbjct: 3373 LRNKMRNDFLSNPEFTFEKV 3392
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 32.7 bits (73), Expect = 0.48 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 11/96 (11%) Frame = +1 Query: 100 PRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATVKEALAALYHHPDDSIRTA-ADR 276 PR S Y ++ + E++ FGA +A +A YH P D+ R AD Sbjct: 130 PRSSDVYVSYDYGKSFN-KISEKLNFGAGNNTEAV------VAQFYHSPADNKRYIFADA 182 Query: 277 WLQKFQHTLD----------AWQVADSLLHDESSNL 354 + Q T D ++ AD LLH ++SNL Sbjct: 183 YAQYLWITFDFCNTIHGFSIPFRAADLLLHSKASNL 218
>HPPD_TETTH (Q27203) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) (F-antigen homolog) (TF-AG) Length = 404 Score = 32.0 bits (71), Expect = 0.82 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 238 HHPDDSIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRSKV 396 + PD+ + +AAD W +K W V DS++H E S+L +++ + K+ Sbjct: 201 NQPDNMMTSAAD-WYEKTLDFHRFWSVDDSMIHTEFSSLRSIVMTDYDQKIKM 252
>XPO1_YEAST (P30822) Exportin-1 (Chromosome region maintenance protein 1)| Length = 1084 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +1 Query: 268 ADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRSKVQRDFEELPSEAFRTIAD 447 A L KFQ DAWQ AD +L S+N ++ L + R ++ LP++ I + Sbjct: 34 AQEILTKFQDNPDAWQKADQIL-QFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 92 Query: 448 SLYGLL 465 + G++ Sbjct: 93 FVVGMI 98
>MGR7_PONPY (Q5RDQ8) Metabotropic glutamate receptor 7 precursor (mGluR7)| Length = 922 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -2 Query: 466 LAIHIESLQWXEKLRMVTPQNPFAPCF*ESENKT*ESLNCCFRHE 332 L ++IE +QW + +R + P PC KT + CC+ E Sbjct: 502 LQLNIEDMQWGKGVREIPPSVCTLPCKPGQRKKTQKGTPCCWTCE 546
>MGR7_MOUSE (Q68ED2) Metabotropic glutamate receptor 7 precursor (mGluR7)| Length = 915 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -2 Query: 466 LAIHIESLQWXEKLRMVTPQNPFAPCF*ESENKT*ESLNCCFRHE 332 L ++IE +QW + +R + P PC KT + CC+ E Sbjct: 502 LQLNIEDMQWGKGVREIPPSVCTLPCKPGQRKKTQKGTPCCWTCE 546
>IKBL_MOUSE (O88995) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 29.6 bits (65), Expect = 4.1 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Frame = +1 Query: 61 PYPPRIAGRRSSTPRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATV------KEA 222 P PPR AG R+ PR + E S R G V G D EA A A V +E Sbjct: 274 PEPPR-AGPRAEHPRGA---ERGSLWRF--GDVPWPCPGGGDPEAMAAALVARGPPLEEQ 327 Query: 223 LAALYHHPDDSIRTAADRWLQKFQHTLDAWQV 318 A + +R DR+LQ+F+ ++ W++ Sbjct: 328 GALKRYLRVQQVRWHPDRFLQRFRSQIETWEL 359
>MURA_BORPE (Q7VSZ3) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Frame = +1 Query: 127 YSRKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDSIRTAAD 273 + R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 286 HGRPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>MURA_BORBR (Q7WDY6) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Frame = +1 Query: 127 YSRKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDSIRTAAD 273 + R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 286 HGRPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>G156_PARPR (P13837) G surface protein, allelic form 156 precursor| Length = 2715 Score = 29.3 bits (64), Expect = 5.3 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 346 CFRHEVSCQLPATRQACAETSAASGRQRCGWS 251 C + +C L T C+ ++AA+ +C WS Sbjct: 1391 CQEKKATCNLYTTEATCSTSAAAATADKCAWS 1422 Score = 29.3 bits (64), Expect = 5.3 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 346 CFRHEVSCQLPATRQACAETSAASGRQRCGWS 251 C + +C L T C+ ++AA+ +C WS Sbjct: 1317 CQEKKATCNLYTTEATCSTSAAAATADKCAWS 1348 Score = 29.3 bits (64), Expect = 5.3 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 346 CFRHEVSCQLPATRQACAETSAASGRQRCGWS 251 C + +C L T C+ ++AA+ +C WS Sbjct: 1243 CQEKKATCNLYTTEATCSTSAAAATADKCAWS 1274 Score = 29.3 bits (64), Expect = 5.3 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 346 CFRHEVSCQLPATRQACAETSAASGRQRCGWS 251 C + +C L T C+ ++AA+ +C WS Sbjct: 1169 CQEKKATCNLYTTEATCSTSAAAATADKCAWS 1200 Score = 28.5 bits (62), Expect = 9.1 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = -2 Query: 346 CFRHEVSCQLPATRQACAETSAASGRQRCGWS 251 C +C L T+ +C+ ++AA+ +C WS Sbjct: 1095 CQEKLATCDLYLTQNSCSTSAAAATADKCAWS 1126
>ESYN_GIBPU (Q00868) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] (Fragment) Length = 983 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 17/75 (22%) Frame = +1 Query: 157 VEEEVGFGADMEAQATATVKEALAALYHH--------------PDDSIR---TAADRWLQ 285 + E GF ++ A + AL A++HH D+ +R T A+R LQ Sbjct: 756 IANEAGFRVEVSAARQWSQNGALDAVFHHFPSSNTDRTLIQFPTDNQLRSSLTLANRPLQ 815 Query: 286 KFQHTLDAWQVADSL 330 K Q A QV +SL Sbjct: 816 KLQRRRAALQVRESL 830
>SYI_CHLTE (Q8KFL5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1084 Score = 28.5 bits (62), Expect = 9.1 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 15/119 (12%) Frame = +1 Query: 115 TVEGYSRKRAAGG---------SVEEEVGFGADMEAQATATV---KEALAALYHHPDDSI 258 T++GY R AG SVE+++G + +EA A +YHH DD+ Sbjct: 76 TMQGYQVPRKAGWDTHGLPVEISVEKKLGLKNKSHVEEYGVGEFNREARALVYHHIDDN- 134 Query: 259 RTAADRWLQKFQHTLDAWQVADS-LLHDESSNLETLMFCSQTLRSK--VQRDFEELPSE 426 + W K + W DS + +++ +E++ + +T+ K + +D++ +P + Sbjct: 135 ---REGW-GKLTERMGYWVDMDSPYITCDNNYIESVWWALKTIFDKGLIYKDYKIVPQD 189
>IKBL_PANTR (Q861W0) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 380 Score = 28.5 bits (62), Expect = 9.1 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Frame = +1 Query: 82 GRRSSTPRKSSTVEGYSRKRAAG-----GSVEEEVGFGADMEAQATATV------KEALA 228 G R P ++ E + R G G V G D EA A A V +E A Sbjct: 269 GDREPKPTRAGPREEHPRGAGRGSLWRFGDVPWPCPGGGDPEAMAAALVARGPPLEEQGA 328 Query: 229 ALYHHPDDSIRTAADRWLQKFQHTLDAWQV 318 + +R DR+LQ+F+ ++ W++ Sbjct: 329 LRRYLRVQQVRWHPDRFLQRFRSQIETWEL 358
>SORL_HUMAN (Q92673) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2214 Score = 28.5 bits (62), Expect = 9.1 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Frame = +1 Query: 157 VEEEVGFGADMEAQATATVKEALAALYHHPDDSIRTA-ADRWLQKFQHTLD--------- 306 + +++ FG ++A +A YH P D+ R AD + Q T D Sbjct: 148 ISDKLNFGLGNRSEAV------IAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFS 201 Query: 307 -AWQVADSLLHDESSNL 354 ++ AD LLH ++SNL Sbjct: 202 IPFRAADLLLHSKASNL 218
>IKBL_HUMAN (Q9UBC1) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 28.5 bits (62), Expect = 9.1 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Frame = +1 Query: 82 GRRSSTPRKSSTVEGYSRKRAAG-----GSVEEEVGFGADMEAQATATV------KEALA 228 G R P ++ E + R G G V G D EA A A V +E A Sbjct: 270 GDREPKPTRAGPREEHPRGAGRGSLWRFGDVPWPCPGGGDPEAMAAALVARGPPLEEQGA 329 Query: 229 ALYHHPDDSIRTAADRWLQKFQHTLDAWQV 318 + +R DR+LQ+F+ ++ W++ Sbjct: 330 LRRYLRVQQVRWHPDRFLQRFRSQIETWEL 359
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 28.5 bits (62), Expect = 9.1 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 13/116 (11%) Frame = +1 Query: 157 VEEEVGFGADMEAQATATVKEALAALYHHPDDSIRTAADRWLQKFQHTLDAWQVADSLLH 336 +EE V ++A AT + + H P+ S TA + +QK + + +A+ Sbjct: 466 LEENVMRHFALDAAATVAAQRDTTVISHSPNTSYDTALEARIQKEEEEI---LMANKRCL 522 Query: 337 DESSNLETL---------MFCSQTLRSKVQRDFEEL----PSEAFRTIADSLYGLL 465 D ++TL M RS+ +R+ E+L P+++ +I+++ GLL Sbjct: 523 DMEGRIKTLHAQIMEKDAMIKVLQQRSRKERETEQLSSMRPAKSLMSISNAGSGLL 578 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.128 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,475,253 Number of Sequences: 219361 Number of extensions: 709479 Number of successful extensions: 2982 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2980 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
