>FLHD_ENTS2 (Q937H8) Transcriptional activator flhD|
          Length = 116

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 238 SLIFRNGGSMPKCRVSGSFFLPLICKNAETNFVISQVNQD---TVTLLSQGGLTANILLL 408
           S +FR G S       G   LP + K AETN ++ Q   D   T+T L+Q     ++  +
Sbjct: 31  SAMFRLGISEEMATTLGGLTLPQMVKLAETNQLVCQFRFDSHQTITRLTQDSRVDDLQQI 90

Query: 409 HA*IFISSLL 438
           H  I +S+ L
Sbjct: 91  HTGILLSTRL 100

>FLHD_SALTY (P0A2R2) Transcriptional activator flhD|
          Length = 113

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 238 SLIFRNGGSMPKCRVSGSFFLPLICKNAETNFVISQVNQD---TVTLLSQGGLTANILLL 408
           S +FR G +       G+  LP + K AETN ++     D   T+T L+Q     ++  +
Sbjct: 31  SAMFRLGINEEMANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITRLTQDSRVDDLQQI 90

Query: 409 HA*IFISSLL 438
           H  I +S+ L
Sbjct: 91  HTGIMLSTRL 100

>FLHD_SALTI (P0A2R3) Transcriptional activator flhD|
          Length = 113

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 238 SLIFRNGGSMPKCRVSGSFFLPLICKNAETNFVISQVNQD---TVTLLSQGGLTANILLL 408
           S +FR G +       G+  LP + K AETN ++     D   T+T L+Q     ++  +
Sbjct: 31  SAMFRLGINEEMANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITRLTQDSRVDDLQQI 90

Query: 409 HA*IFISSLL 438
           H  I +S+ L
Sbjct: 91  HTGIMLSTRL 100

>FLHD_SALPU (P59993) Transcriptional activator flhD|
          Length = 113

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 238 SLIFRNGGSMPKCRVSGSFFLPLICKNAETNFVISQVNQD---TVTLLSQGGLTANILLL 408
           S +FR G +       G+  LP + K AETN ++     D   T+T L+Q     ++  +
Sbjct: 31  SAMFRLGINEEMANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITRLTQDSRVDDLQQI 90

Query: 409 HA*IFISSLL 438
           H  I +S+ L
Sbjct: 91  HTGIMLSTRL 100

>FLHD_ECO57 (Q8XCE8) Transcriptional activator flhD|
          Length = 116

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 238 SLIFRNGGSMPKCRVSGSFFLPLICKNAETNFVISQVNQD---TVTLLSQGGLTANILLL 408
           S +FR G +        +  LP + K AETN ++     D   T+TLL+Q     ++  +
Sbjct: 31  SAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFRFDSHQTITLLTQDSRVDDLQQI 90

Query: 409 HA*IFISSLL 438
           H  I +S+ L
Sbjct: 91  HTGIMLSTRL 100

>HYAL_STRPU (O76536) Hyalin (Fragment)|
          Length = 1200

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 140  FPACMNP-TYL*LAIVGIGENSHNGPDPCNLSTTVLYLETEGVCPSVVCL 286
            FP  +NP TY+       G+NS N  DPC  + TV   +T    P+V C+
Sbjct: 1103 FPVGVNPVTYV------FGDNSGNQADPCTFTITVNTQDT--TPPTVTCI 1144

>MMPLC_STRCO (O88022) Putative membrane protein SCO6666|
          Length = 705

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +3

Query: 66  DAIPATKAAAGSSTLFSSV*NPCSVSQLV*TLPIYDLQLLGL--GKIVIMDQIRAIYLLQ 239
           +A+  T AAAG + LFS +    S++ L+   P   L+ +GL    +V++D + A+ LL 
Sbjct: 266 EAVHRTVAAAGRTVLFSGLTVAVSLAGLL-VFPSTFLRSMGLAVAAVVVVDMLAALTLLP 324

Query: 240 SYI 248
           + +
Sbjct: 325 ALL 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,131,449
Number of Sequences: 219361
Number of extensions: 1425218
Number of successful extensions: 3325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3324
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)