>VPS35_MOUSE (Q9EQH3) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
           (Maternal-embryonic 3)
          Length = 796

 Score =  103 bits (256), Expect = 3e-22
 Identities = 52/100 (52%), Positives = 69/100 (69%)
 Frame = +3

Query: 168 DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMR 347
           D++E+ L E I  V+  +F M R LD N L DALK+++ ML ELRTS LSP  YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 348 AFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGHVLPRL 467
             DE+  LE++  +E  +G   V DLYELVQ+AG+++PRL
Sbjct: 70  ISDELHYLEVYLTDEFAKGR-KVADLYELVQYAGNIIPRL 108

>VPS35_HUMAN (Q96QK1) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
           (hVPS35) (Maternal-embryonic 3)
          Length = 796

 Score =  103 bits (256), Expect = 3e-22
 Identities = 52/100 (52%), Positives = 69/100 (69%)
 Frame = +3

Query: 168 DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMR 347
           D++E+ L E I  V+  +F M R LD N L DALK+++ ML ELRTS LSP  YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 348 AFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGHVLPRL 467
             DE+  LE++  +E  +G   V DLYELVQ+AG+++PRL
Sbjct: 70  ISDELHYLEVYLTDEFAKGR-KVADLYELVQYAGNIIPRL 108

>VPS35_YEAST (P34110) Vacuolar protein sorting-associated protein VPS35|
          Length = 944

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 38/90 (42%), Positives = 57/90 (63%)
 Frame = +3

Query: 198 IAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMRAFDEMRKLEM 377
           IA ++Q    M+R L  + L ++L++++ ML+ELR   LSP KYYELY+  FD +  L  
Sbjct: 11  IAVIKQRTALMNRCLSQHKLMESLQHTSIMLTELRNPNLSPKKYYELYVIIFDSLTNLST 70

Query: 378 FFREETRRGSCSVVDLYELVQHAGHVLPRL 467
           +  E   +    + DLYELVQ+ G+V+PRL
Sbjct: 71  YLIENHPQNH-HLADLYELVQYTGNVVPRL 99

>VPS35_SCHPO (O74552) Vacuolar protein sorting-associated protein vps35|
          Length = 785

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 26/57 (45%), Positives = 38/57 (66%)
 Frame = +3

Query: 297 LRTSRLSPHKYYELYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGHVLPRL 467
           +R S L+P +YYELYM   + +R L     E    G+ +++DLYELVQ+AG ++PRL
Sbjct: 1   MRNSALTPKQYYELYMFNMESLRLLGGTLLETHLNGTHNLMDLYELVQYAGSIVPRL 57

>LAP2_HUMAN (Q96RT1) LAP2 protein (Erbb2-interacting protein) (Erbin)|
           (Densin-180-like protein)
          Length = 1412

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -3

Query: 421 STTEQLPRRVSSLKNISSFRISSNALMY 338
           ++ +QLP  + SLKNI++ +I  N LMY
Sbjct: 263 NSLQQLPETIGSLKNITTLKIDENQLMY 290

>CUT7_SCHPO (P24339) Kinesin-like protein cut7 (Cell untimely torn protein 7)|
          Length = 1085

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
 Frame = +3

Query: 159 GGGDDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYEL 338
           G   D +  L+EG   + +  + +  +LD++N + A+K S                YYEL
Sbjct: 171 GDLSDSDGILSEGAGLIPRALYQLFSSLDNSNQEYAVKCS----------------YYEL 214

Query: 339 Y------MRAFDEMRKLEMFFREETRRGSCSVVDLYE-LVQHAG 449
           Y      +   +E+RK    F + +RRG+  +  + E  +++AG
Sbjct: 215 YNEEIRDLLVSEELRKPARVFEDTSRRGNVVITGIEESYIKNAG 258

>LAP2_MOUSE (Q80TH2) LAP2 protein (Erbb2-interacting protein) (Erbin)|
           (Densin-180-like protein)
          Length = 1402

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 421 STTEQLPRRVSSLKNISSFRISSNALMY 338
           ++ +QLP  + SLKN+++ +I  N LMY
Sbjct: 263 NSLQQLPETIGSLKNVTTLKIDENQLMY 290

>SEC71_SCHPO (Q9UT02) Protein transport protein sec71|
          Length = 1811

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
 Frame = +3

Query: 156  DGGGDDEERWLAEGIAGVQQNAFYMHRALD-SNNLKDA-----LKYSAQMLSELRTSRLS 317
            D G +  + +L E    +Q+N   +    D ++N  +      L ++A + + L T    
Sbjct: 860  DDGANLSDSFLTEVYEEIQKNEIVLKDEQDPTSNFPEIPGTSNLSFAANISNALATVGRD 919

Query: 318  PHKYYELYMRAFDEM-RKLEMFF----REETRRGSCSVVDLYELVQHAGHVLP 461
              +  E Y  A ++M  K E  F    RE+  RG  S  D+Y   +H  HV P
Sbjct: 920  LQR--EAYYMASNKMANKTEALFKDLIREQRERGKLSGNDIYYTARHFEHVCP 970

>NEMO_MOUSE (O88522) NF-kappa-B essential modulator (NEMO) (NF-kappa-B|
           essential modifier) (Inhibitor of nuclear factor kappa-B
           kinase gamma subunit) (IkB kinase gamma subunit)
           (I-kappa-B kinase gamma) (IKK-gamma) (IKKG) (IkB
           kinase-associated protein 1)
          Length = 412

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
 Frame = +3

Query: 129 NTAAARMLPDGGGDDEERWLAEG----------IAGVQQNAFYMHRALDSNN-LKDALKY 275
           N  +  + P GG  +++  L E           +   Q     + R L+ N  L+DA++ 
Sbjct: 8   NQLSETVQPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTPETLQRCLEENQELRDAIRQ 67

Query: 276 SAQML----SELRTSRLSPHKYYELYMRAFDEMRKL 371
           S QML     EL   ++S  +  E  M  F E RKL
Sbjct: 68  SNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKL 103

>FUS_TRTV (P24614) Fusion glycoprotein F0 precursor [Contains: Fusion|
           glycoprotein F2; Fusion glycoprotein F1]
          Length = 538

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
 Frame = +2

Query: 230 APRPRLEQPQGRAQVLGADALGAAHLQALPAQV-----------LRAIHEGVRRDAEAGD 376
           A   RL  P+ R  VLGA ALG A   A+ A V           ++AI   +R   EA  
Sbjct: 90  AKESRLSSPRRRRFVLGAIALGVATAAAVTAGVALAKTIRLEGEVKAIKNALRNTNEAVS 149

Query: 377 VLQGG 391
            L  G
Sbjct: 150 TLGNG 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.127    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,297,152
Number of Sequences: 219361
Number of extensions: 674073
Number of successful extensions: 2496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2493
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)