ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45c07 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_SYNY3 (P72689) Translation initiation factor IF-2| Length = 1001 Score = 32.3 bits (72), Expect = 0.51 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Frame = -1 Query: 434 PTQQKLVQDRERHQSPGHTFSTERPQDPP--KLSRNKAANPPRP------ASKIQSAANP 279 P QQK++ + + G S RP PP KL KA PP+P A KIQ P Sbjct: 78 PKQQKILAIHHKQEKSGGP-SPARPTPPPRPKLQAPKAPTPPQPPVAKASAPKIQKQEEP 136 Query: 278 A 276 A Sbjct: 137 A 137
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 31.6 bits (70), Expect = 0.87 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -1 Query: 413 QDRERHQSPGHTFSTERPQDPPKLSRNKAANPPRPASKIQSAAN 282 +DR R +S + S R + PPK SR ++ + R S+ +SA N Sbjct: 221 RDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADN 264
>MYO6_HUMAN (Q9UM54) Myosin-6 (Myosin VI)| Length = 1285 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +2 Query: 8 STDPNPVARTQGREGKIFFNERTDFFFIPLLSPSDRQR 121 S NP A+ R+ +I N + FF IP + P+D+ + Sbjct: 1146 SPQQNPAAQIPARQREIEMNRQQRFFRIPFIRPADQYK 1183
>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor| (Salivary proline-rich protein Po) (Parotid o protein) [Contains: Protein N1; Glycosylated protein A] Length = 247 Score = 26.2 bits (56), Expect(2) = 2.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -1 Query: 434 PTQQKLVQDRERHQSPGHTFSTERPQDPPKLSRNKAANPPRP 309 P Q+ + R PG +PQ PP+ NK PP P Sbjct: 165 PPPQEGNKSRSARSPPG------KPQGPPQQEGNKPQGPPPP 200 Score = 22.3 bits (46), Expect(2) = 2.9 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -3 Query: 333 QGSKPAATSQQNPVRRESGDPELEPAP 253 QG PA + Q P +G P+ P P Sbjct: 204 QGPPPAGGNPQQPQDPPAGKPQGPPPP 230
>SH3K1_RAT (Q925Q9) SH3-domain kinase-binding protein 1 (SH3-containing,| expressed in tumorigenic astrocytes) (Regulator of ubiquitous kinase) (Ruk) Length = 709 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = -1 Query: 413 QDRERHQSPGH-----TFSTERPQDPPKLSRNKAANPPRPASKIQSAANPA 276 +D+E H S H + T R ++S NKA+ PP+P + +++ PA Sbjct: 558 EDKEEHISLAHRGIDVSKKTSRTVTISQVSDNKASLPPKPGTMAAASSGPA 608
>BCL6B_HUMAN (Q8N143) B-cell CLL/lymphoma 6 member B protein (Bcl6-associated| zinc finger protein) (Zinc finger protein 62) Length = 480 Score = 29.3 bits (64), Expect = 4.3 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 389 PGHTFSTERPQDPPKLSRNKAANPPRPASKIQSAAN 282 PG +E DPP SR+ + PP PAS A N Sbjct: 158 PGSPRRSEGHPDPPTESRSCSQGPPSPASPDPKACN 193
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 28.9 bits (63), Expect = 5.7 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%) Frame = -1 Query: 401 RHQSPGHTFSTERP---QDPPKLSRNKAANP------PRPASKIQSAANPAIQ 270 R +P FST RP Q P +S + AN PRPA+ +AA PA++ Sbjct: 449 RPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVR 501
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -1 Query: 434 PTQQKLVQDRERHQSPG-HTFSTERPQDPPKLSRNKAANPPRPASKIQSAANPAI 273 P QQ Q HQ P H ++P PP+ S+ P A + SA PA+ Sbjct: 71 PPQQPPPQQPPPHQQPPPHQPPHQQPPPPPQESKPVVPQGPGSAPGVSSAPPPAV 125
>VMSA_HHBV (P13847) Major surface antigen precursor| Length = 335 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/48 (31%), Positives = 20/48 (41%) Frame = -3 Query: 414 PRSRAPPVTWPYFQHGTAARSAKIEQEQGSKPAATSQQNPVRRESGDP 271 PR PP+TW + A K QE KPA T+ + +P Sbjct: 81 PRPTPPPITWTEEEDKKAKEFFKQYQENRPKPAETAPPPITELHAAEP 128
>ALLC_ACIAD (Q6F6Y1) Probable allantoicase (EC 3.5.3.4) (Allantoate| amidinohydrolase) Length = 334 Score = 28.5 bits (62), Expect = 7.4 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = -3 Query: 411 RSRAPPVTWPYFQHGTAARSAKIEQE----QGSKPAATSQQNPVRRESGDPELEP 259 R RAP W G A + KIE + +G+ PA S Q ++ DP+L P Sbjct: 225 RRRAPGFDWCLLALGQAGKIEKIEIDTAHFKGNYPAQVSIQAIYIEDATDPQLIP 279
>TIM50_CRYNE (Q5KNV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 516 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -3 Query: 429 SAETSPRSRAPPVTWPYFQHGTAARSAKIEQEQGSKPAATSQQNPVRRESGDPELEPAP 253 ++E SP R PPV P + + ++ + +G+ AA +QQ +G P P P Sbjct: 34 ASEPSPAERPPPV--PENVNPSQPFEPEVSKSEGTAKAAETQQAEEPASAGTPLTPPQP 90
>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein| Length = 1259 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = -1 Query: 434 PTQQKLVQDRERHQSPGHTFSTERPQDPPKLSRNKAANPPRPASKIQSAANPAIQ 270 P Q Q R P TE P PP LS PP +++Q A P +Q Sbjct: 307 PQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPE--AQLQPAPQPQVQ 359
>PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allele L (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 276 Score = 26.2 bits (56), Expect(2) = 7.7 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -1 Query: 434 PTQQKLVQDRERHQSPGHTFSTERPQDPPKLSRNKAANPPRP 309 P Q+ + R PG +PQ PP+ NK PP P Sbjct: 194 PPPQEGNKSRSARSPPG------KPQGPPQQEGNKPQGPPPP 229 Score = 20.8 bits (42), Expect(2) = 7.7 Identities = 9/27 (33%), Positives = 12/27 (44%) Frame = -3 Query: 333 QGSKPAATSQQNPVRRESGDPELEPAP 253 QG P + Q P +G P+ P P Sbjct: 233 QGPPPPGGNPQQPQAPPAGKPQGPPPP 259
>PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allele M (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 238 Score = 26.2 bits (56), Expect(2) = 7.8 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -1 Query: 434 PTQQKLVQDRERHQSPGHTFSTERPQDPPKLSRNKAANPPRP 309 P Q+ + R PG +PQ PP+ NK PP P Sbjct: 156 PPPQEGNKSRSARSPPG------KPQGPPQQEGNKPQGPPPP 191 Score = 20.8 bits (42), Expect(2) = 7.8 Identities = 9/27 (33%), Positives = 12/27 (44%) Frame = -3 Query: 333 QGSKPAATSQQNPVRRESGDPELEPAP 253 QG P + Q P +G P+ P P Sbjct: 195 QGPPPPGGNPQQPQAPPAGKPQGPPPP 221
>MYP0_CHICK (P37301) Myelin P0 protein precursor (Myelin protein zero) (Myelin| peripheral protein) (MPP) Length = 249 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -3 Query: 432 NSAETSPRSRAPPVTWPYFQHGTAARSAKIEQEQGS 325 ++ + S RSR PPV + H +A++A ++ +G+ Sbjct: 205 SAKDASKRSRQPPVLYAMLDHSRSAKAAAEKKSKGA 240
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -1 Query: 374 STERPQDPPKLSRNKAANPPRPASKIQSAANP 279 S+ R + PPK + ++PPR ++ +A+P Sbjct: 363 SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP 394
>ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)| (p150) (c-ABL) (Abelson murine leukemia viral oncogene homolog 1) Length = 1130 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 383 HTFSTERP-QDPPKLSRNKAANPPRPASKIQSAANPAIQ 270 H S+E P +D KLSR K A PP PA+ A Q Sbjct: 878 HKHSSESPGRDKGKLSRLKPAPPPPPAASAGKAGGKPSQ 916
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -1 Query: 374 STERPQDPPKLSRNKAANPPRPASKIQSAANP 279 S+ R + PPK + ++PPR ++ +A+P Sbjct: 361 SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP 392
>ARHGF_HUMAN (O94989) Rho guanine nucleotide exchange factor 15 (Vsm-RhoGEF)| Length = 841 Score = 28.1 bits (61), Expect = 9.7 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 423 ETSPRSRAPPVTWPYFQHGTAARSAKIEQEQGSKPAATSQQNPVRRESGDPELEPAP 253 E S PP P +A+R++ Q P++T +PV R S P EPAP Sbjct: 64 EPPAASLKPPALLP----PSASRASLDSQTSPDSPSSTPTPSPVSRRSASP--EPAP 114
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -1 Query: 374 STERPQDPPKLSRNKAANPPRPASKIQSAANP 279 S+ R + PPK + ++PPR ++ +A+P Sbjct: 363 SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP 394
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -3 Query: 366 TAARSAKIEQEQGS----KPAATSQQNPVRRESGD 274 T+A ++++QEQ + KP Q+NPV +GD Sbjct: 1585 TSAEKSEVKQEQEAEEDKKPGDVKQENPVEEAAGD 1619
>VE4_HPV05 (P06924) Probable protein E4| Length = 245 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = -3 Query: 399 PPVTWPYFQHGTAARSAKIEQEQGSKPAATSQQNPVRRESGDPELEPAP 253 PP P +G + K++Q +G + ++ V E GD E P P Sbjct: 148 PPPPPPAPHNGHSGHEPKVQQPEGPEGREGHEEGAVGGEGGDEEGHPPP 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,207,447 Number of Sequences: 219361 Number of extensions: 831550 Number of successful extensions: 3553 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3547 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
