ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier fami... 28 4.0
2YC9F_SCHPO (Q09889) Hypothetical protein C584.15c in chromosome III 28 5.2
3ENGD_BUCBP (Q89AR6) GTP-dependent nucleic acid-binding protein engD 28 6.8
4NADA_CHLTE (Q8KEW2) Quinolinate synthetase A 28 6.8
5G3OX4_ARATH (Q9C971) Gibberellin 3-beta-dioxygenase 4 (EC 1.14.1... 27 8.9
6KLP2_SCHPO (Q9US03) Kinesin-like protein 2 27 8.9

>KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 469

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 360 AKIYLLNEDQEKRSHFPLSRPQHASSHSSE 271
           A ++L+    E  SH PL +P H  SHS +
Sbjct: 184 AFLHLIPHALEPHSHHPLEQPGHGHSHSGQ 213



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>YC9F_SCHPO (Q09889) Hypothetical protein C584.15c in chromosome III|
          Length = 594

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = -1

Query: 392 INGVILLNDMSPKYIS*TKIKRSDHTFLC----QDHNTPPPTLLSVVNCLLNFAYVFLMP 225
           ++G+++L+  SP  +   K++ S  +F+C      H +P   +   V  +L+ ++ FL P
Sbjct: 41  LSGIVVLSVSSPIRVKNIKLRLSGRSFVCWADESRHASPGNRIRRQVVQILDKSWSFLAP 100

Query: 224 VSEADLI 204
              A +I
Sbjct: 101 NESAKVI 107



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>ENGD_BUCBP (Q89AR6) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 228 HQKYIGK----VKQAVYHTQKSGRRRVVVLTEESVIASLDLR 341
           H K + K    +K+ VYH +KS   R + LTEE +     LR
Sbjct: 153 HNKQVNKELLILKKCVYHLEKSKSLRSLNLTEEEIFVINYLR 194



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>NADA_CHLTE (Q8KEW2) Quinolinate synthetase A|
          Length = 322

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 YIGKVKQAVYHTQKSGRRRVVVLTEESVIASLDLRS-GDIF 356
           ++G     + +T+KS R+  +V TE  ++  ++ RS G +F
Sbjct: 224 FVGSTSALLDYTEKSPRKSFIVATEPGILYEMEKRSPGKVF 264



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>G3OX4_ARATH (Q9C971) Gibberellin 3-beta-dioxygenase 4 (EC 1.14.11.15)|
           (Gibberellin 3 beta-hydroxylase 4) (GA 3-oxidase 4)
           (AtGA3ox4) (AtGA3ox3)
          Length = 355

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 228 HQKYIGKVKQAVYHTQKSGRRRVVVLTEESVIASLDLRSGDIFWRHVIEKN 380
           H KY G +++ V   +K   R +       ++ SL +   DI W H +EK+
Sbjct: 153 HTKYCGIIQEYVDEMEKLASRLLYC-----ILGSLGVTVEDIEWAHKLEKS 198



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>KLP2_SCHPO (Q9US03) Kinesin-like protein 2|
          Length = 817

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 216 LADWHQKYIGKVKQAVYHTQKSGRRRVVVLTEE 314
           LA  +++  GK K  +YH  K+GR  +  +T E
Sbjct: 619 LASGNEEEKGKKKLEIYHDTKAGRTTITNITSE 651


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,815,136
Number of Sequences: 219361
Number of extensions: 607190
Number of successful extensions: 1606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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