ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9 29 2.5
2DNAJ1_AZOSE (Q5P3M1) Chaperone protein dnaJ 1 29 3.2
3U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliar... 28 4.2
4CAC1S_HUMAN (Q13698) Voltage-dependent L-type calcium channel al... 28 4.2
5CSP_PLABA (P23093) Circumsporozoite protein precursor (CS) 28 7.2
6CSP_PLABE (P06915) Circumsporozoite protein precursor (CS) 28 7.2
7PAK6_HUMAN (Q9NQU5) Serine/threonine-protein kinase PAK 6 (EC 2.... 27 9.3
8SIX5_HUMAN (Q8N196) Homeobox protein SIX5 (DM locus-associated h... 27 9.3
9PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein ... 27 9.3

>WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9|
          Length = 378

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 323 KHPPPQNRPQGAQQPRTSDSXXXXXXXAESTRETK 219
           KH  PQ +PQ   QP  S S       ++ST+  K
Sbjct: 123 KHSLPQTQPQPQPQPSASSSSSSSSSSSKSTKPRK 157



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>DNAJ1_AZOSE (Q5P3M1) Chaperone protein dnaJ 1|
          Length = 347

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 353 PHSALPSQARKHPPPQNRPQGAQQ 282
           PH A  + AR  PPP+  P+GA +
Sbjct: 70  PHDAQAADARPEPPPEAPPRGADR 93



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>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit related-protein 2 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 2)
          Length = 462

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 365 RRRRPHSALPSQARKHPPPQNRPQGAQQPR 276
           RRR+ HS  P +  +  PPQ   Q   QP+
Sbjct: 428 RRRKDHSPGPWEPEQEEPPQQESQSQPQPQ 457



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>CAC1S_HUMAN (Q13698) Voltage-dependent L-type calcium channel alpha-1S subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 3,
            skeletal muscle)
          Length = 1873

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 21   TRSTHARTLSPPCRPRSPHSKTLVTLRTKNLT 116
            T +T  R L  PCR   PHSK  V +    LT
Sbjct: 1696 TPATRGRALGQPCRVLGPHSKPCVEMLKGLLT 1727



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>CSP_PLABA (P23093) Circumsporozoite protein precursor (CS)|
          Length = 347

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 PHSALPSQARKHPPPQNRPQGAQQPR 276
           P+   P Q   +P PQ RPQ   QP+
Sbjct: 202 PNDPAPPQGNNNPQPQPRPQPQPQPQ 227



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>CSP_PLABE (P06915) Circumsporozoite protein precursor (CS)|
          Length = 339

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 PHSALPSQARKHPPPQNRPQGAQQPR 276
           P+   P Q   +P PQ RPQ   QP+
Sbjct: 194 PNDPAPPQGNNNPQPQPRPQPQPQPQ 219



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>PAK6_HUMAN (Q9NQU5) Serine/threonine-protein kinase PAK 6 (EC 2.7.11.1)|
           (p21-activated kinase 6) (PAK-6) (PAK-5)
          Length = 681

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 347 SALPSQARKHPPPQNRPQGAQQPRTSDS 264
           +A PS ++  PPPQ++P  + +P   D+
Sbjct: 271 TAPPSSSKPGPPPQSKPNSSFRPPQKDN 298



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>SIX5_HUMAN (Q8N196) Homeobox protein SIX5 (DM locus-associated homeodomain|
           protein)
          Length = 739

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -3

Query: 317 PPPQNRPQGAQQPRTS---DSXXXXXXXAESTRETKET 213
           PPPQ  PQGA + +TS   D         E+  E  ET
Sbjct: 368 PPPQPSPQGASETKTSLVLDPQTGEVRLEEAQSEAPET 405



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>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor|
           (PRP-1/PRP-2) (Parotid proline-rich protein 1/2)
           (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa)
           (Parotid isoelectric focusing variant protein) (PIF-S)
           (Parotid double-band
          Length = 166

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 338 PSQARKHPPPQNRPQGAQQ 282
           P Q    PPPQ RPQG  Q
Sbjct: 95  PQQGGHPPPPQGRPQGPPQ 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,524,236
Number of Sequences: 219361
Number of extensions: 418367
Number of successful extensions: 1924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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