ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45a11 |
|---|---|
| Clone Library Name | barley_pub |
>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)| (P-Frk) Length = 375 Score = 35.4 bits (80), Expect = 0.063 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%) Frame = +1 Query: 88 SSPSPCAPFSRRARPPRGRMLPTRQTSSASARPATT--------CSATPTLMKMHC 231 ++P P P A PP G++ P ++A PA T C+ P L MHC Sbjct: 302 AAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHC 357
>FOXL2_HUMAN (P58012) Forkhead box protein L2| Length = 376 Score = 35.4 bits (80), Expect = 0.063 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%) Frame = +1 Query: 88 SSPSPCAPFSRRARPPRGRMLPTRQTSSASARPATT--------CSATPTLMKMHC 231 ++P P P A PP G++ P ++A PA T C+ P L MHC Sbjct: 303 AAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHC 358
>SPRR4_HUMAN (Q96PI1) Small proline-rich protein 4| Length = 79 Score = 33.5 bits (75), Expect = 0.24 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 79 CVPSSPSPCAPFSRRARPPRGRMLPTRQ 162 C P + PCAP ++ PP+G ++P +Q Sbjct: 38 CAPKTKDPCAPQVKKQCPPKGTIIPAQQ 65
>DEOD_TREPA (O83716) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 233 Score = 33.5 bits (75), Expect = 0.24 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Frame = -1 Query: 287 GTNFGLPSQ----LHVFWTLGTQQCIFIKVGVAEHVVAGLALAELVCRVGSILPRGGRAR 120 GT GLPS +F G Q+ I +VG A + +AL +VC +G+ AR Sbjct: 61 GTGMGLPSHSIYVTELFQDYGVQKAI--RVGTAGGLQEEVALKSVVCALGAATDSAINAR 118 Query: 119 REKGAH 102 R G H Sbjct: 119 RFSGMH 124
>HLYS_HYDAT (Q52SK7) Hydralysin| Length = 243 Score = 31.6 bits (70), Expect = 0.91 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = -1 Query: 341 FQLSITVDISNQWTCINAGTNFGLPSQLHVFWTLGTQQCIFIKVGVAEHVVAGLALAELV 162 F++ ITVD S G NFG Q H FW + T Q + G+ + + ++ ++ Sbjct: 182 FEVPITVDGS-------FGANFGSSVQGHYFWFMSTDQALSKTSGIIKGTIDHASVFDVS 234 Query: 161 CRVGSILP 138 +G P Sbjct: 235 TEIGPSEP 242
>RDRP_NODAV (Q9IMM4) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 1043 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = +3 Query: 246 PKHVELRWQTEVSSSIYASPLIADIN 323 P HVE+ + EVS+ +YASPL++D N Sbjct: 408 PAHVEVD-EAEVSARVYASPLVSDEN 432
>RGS9_HUMAN (O75916) Regulator of G-protein signaling 9 (RGS9)| Length = 674 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = +1 Query: 79 CVPSSPSPCAPFSRRARPPRGRMLPTRQTSSASARPATTCSATP 210 C+P PSP +PFS R PR P S RP+TT +P Sbjct: 487 CMP--PSPSSPFSSSCRSPR---KPFASPSRFIRRPSTTICPSP 525
>PERO_DROME (Q01603) Peroxidase precursor (EC 1.11.1.7) (DmPO)| Length = 690 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = +1 Query: 82 VPSSPSPCAPFSRRARPP---RGRMLPTRQTSSASARPATTCSAT 207 +P+SP+P PFS A PP G PT S +A PA C T Sbjct: 60 LPTSPAPQNPFSSPASPPVSAYGYSFPTAGRVSCAAPPA-VCEKT 103
>HXB4A_BRARE (P22574) Homeobox protein Hox-B4a (Hox-B4) (Zf-13)| Length = 246 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +1 Query: 133 PRGRMLPTRQTSSASARPATTC-SATPTLMKMHC*VPSVQNTWS*DGR--PKLVPAFMQV 303 PRG +LPT S+ P+ C S TP+ P+ QNT + R P + P +V Sbjct: 78 PRGHVLPTTALSTPLPEPSHHCDSVTPSPPPACGQTPTSQNTSTVSSRKDPVVYPWMKKV 137 Query: 304 H*LLIS 321 H ++S Sbjct: 138 HVNIVS 143
>ATX7_MOUSE (Q8R4I1) Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog)| Length = 867 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = +1 Query: 82 VPSSPSPCAPFSRRARPPRGRMLPTRQTSSASARPATTCSATPTLMKMHC*VPS 243 +P P +P S R P R +PT Q S ATT SA P L+ C P+ Sbjct: 542 IPPVPCTTSPVSARV-PHRTNSVPTSQ-GGISYLAATTVSAPPVLLSSTCISPN 593
>RPOC_MYCMS (Q6MRX5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1255 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = +3 Query: 324 SDGKLEVVVPSFVHYLKVLEGSDGDKLPG 410 SD +E+++ ++ +K+ +G D D LPG Sbjct: 1123 SDKYIEIIIKQMLNKVKITDGGDSDLLPG 1151
>JIP2_MOUSE (Q9ERE9) C-jun-amino-terminal kinase-interacting protein 2| (JNK-interacting protein 2) (JIP-2) (JNK MAP kinase scaffold protein 2) (Islet-brain-2) (IB-2) (Mitogen-activated protein kinase 8-interacting protein 2) Length = 830 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +1 Query: 85 PSSPSPCAPFSRRARPPRGRMLPTRQTSSASARPATTCSA 204 P+ P PC S P R + P T +ARP +CSA Sbjct: 432 PAQPGPCLFLSN---PTRDTITPLWATPGRTARPGRSCSA 468
>VG28_ICHV1 (Q00131) Hypothetical gene 28 protein| Length = 590 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +1 Query: 85 PSSPSPCA-PFSRRARPPRGRMLPTRQTSSASARPATTCSATPTLMKM 225 PS P P P + + PP G PT + S +P + A TLM + Sbjct: 543 PSLPQPVPEPLAPQEPPPPGTSAPTLEASLPQQKPVVSKGAFETLMNL 590
>SYA_CLOPE (Q8XJH6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 879 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = +3 Query: 216 DEDALLSTKCPKHVELRWQTEVSSSIYASPLIADINSDGKLEVVVPSFVHYLKVLEGS 389 +E LL+ K P + E+ Q +I + +A + K V FVHY+KV+EGS Sbjct: 488 EEGFLLTDKTPFYAEMGGQVGDRGNITSETGMAIVTDCKKN--VGGKFVHYIKVIEGS 543
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/63 (31%), Positives = 24/63 (38%) Frame = +1 Query: 79 CVPSSPSPCAPFSRRARPPRGRMLPTRQTSSASARPATTCSATPTLMKMHC*VPSVQNTW 258 CVP +P P GR L + + P TT S+T TL S Q TW Sbjct: 361 CVPPAPDMALPRLGTQSTGPGRCLSPNLQAQEAPAPVTTSSSTSTLSSSPW---SAQPTW 417 Query: 259 S*D 267 D Sbjct: 418 KSD 420
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 85 PSSPSPCAPFSRRARPPRGRMLPTRQTSSASARPATTCSATP 210 P++ +P AP R P T + + +ARPATT + P Sbjct: 184 PATAAPAAPAPRPGAPAARPGTTTTRPGTTTARPATTTAQRP 225
>HLYS3_CHLVR (Q52SK6) Hydralysin-3| Length = 217 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/69 (26%), Positives = 30/69 (43%) Frame = -1 Query: 344 YFQLSITVDISNQWTCINAGTNFGLPSQLHVFWTLGTQQCIFIKVGVAEHVVAGLALAEL 165 +F++ +TVD S G NF Q H FW + + C+ GV + + + ++ Sbjct: 155 FFEVPVTVDGS-------FGANFSSTVQGHYFWFMDARSCLNKTSGVIKGTIDHANVFDV 207 Query: 164 VCRVGSILP 138 VG P Sbjct: 208 SVEVGPSEP 216
>SPRR4_MOUSE (Q8CGN8) Small proline-rich protein 4| Length = 76 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +1 Query: 79 CVPSSPSPCAPFSRRARPPRGRMLPTRQTSSASARP 186 CVP + PC P +++ P R P ++ A P Sbjct: 36 CVPKTKDPCVPQAKKQCPARSTTNPAQEKCPAQQDP 71
>YD52_SCHPO (Q10307) Hypothetical protein C6C3.02c in chromosome I| Length = 172 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +1 Query: 109 PFSRRARPPRGRMLPTRQTSSASARPATTCSATP 210 P R A PP R P R S+A+A P T + P Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPP 35 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,981,756 Number of Sequences: 219361 Number of extensions: 1047438 Number of successful extensions: 3515 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3509 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
