ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_852677.1| PREDICTED: Canis familiaris similar to discs la... 44 0.35
2ref|XM_852594.1| PREDICTED: Canis familiaris similar to discs la... 44 0.35
3ref|XM_843878.1| PREDICTED: Canis familiaris similar to discs la... 44 0.35
4ref|XM_852476.1| PREDICTED: Canis familiaris similar to discs la... 44 0.35
5ref|XM_852435.1| PREDICTED: Canis familiaris similar to discs la... 44 0.35
6ref|XM_852393.1| PREDICTED: Canis familiaris similar to discs la... 44 0.35
7ref|XM_852353.1| PREDICTED: Canis familiaris similar to discs la... 44 0.35
8emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4,... 44 0.35
9emb|CR847524.5| Zebrafish DNA sequence from clone DKEY-77M9 in l... 44 0.35
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
12dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
13gb|AC154643.2| Mus musculus BAC clone RP23-277M12 from 13, compl... 44 0.35
14dbj|AK065819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
15dbj|AB101645.1| Oryza sativa (japonica cultivar-group) Roc2 mRNA... 44 0.35
16emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in l... 44 0.35
17gb|AC102892.9| Mus musculus chromosome 5, clone RP24-362B10, com... 42 1.4
18gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, com... 42 1.4
19gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.4
20gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, com... 42 1.4
21gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete... 42 1.4
22gb|BC056534.1| Danio rerio tissue inhibitor of metalloproteinase... 40 5.5
23gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.5
24ref|XM_854820.1| PREDICTED: Canis familiaris similar to zinc fin... 40 5.5
25ref|XM_538605.2| PREDICTED: Canis familiaris similar to zinc fin... 40 5.5
26emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 i... 40 5.5
27gb|AC008759.9| Homo sapiens chromosome 19 clone CTD-3116E22, com... 40 5.5
28dbj|AK122974.1| Homo sapiens cDNA FLJ16721 fis, clone UTERU30016... 40 5.5
29emb|AL935286.14| Zebrafish DNA sequence from clone CH211-198E14 ... 40 5.5
30ref|XM_315491.2| Anopheles gambiae str. PEST ENSANGP00000021218 ... 40 5.5
31emb|AL840629.24| Mouse DNA sequence from clone RP23-334A5 on chr... 40 5.5
32emb|CT486008.9| Mouse DNA sequence from clone RP24-112G3 on chro... 40 5.5
33emb|AL645974.7| Mouse DNA sequence from clone RP23-249M13 on chr... 40 5.5

>ref|XM_852677.1| PREDICTED: Canis familiaris similar to discs large
           homolog-associated protein 1 isoform beta, transcript
           variant 13 (LOC480194), mRNA
          Length = 2917

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 cacgcagcgcaactccttccag 142
           ||||||||||||||||||||||
Sbjct: 148 cacgcagcgcaactccttccag 169



to top

>ref|XM_852594.1| PREDICTED: Canis familiaris similar to discs large
           homolog-associated protein 1 isoform beta, transcript
           variant 12 (LOC480194), mRNA
          Length = 2941

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 cacgcagcgcaactccttccag 142
           ||||||||||||||||||||||
Sbjct: 148 cacgcagcgcaactccttccag 169



to top

>ref|XM_843878.1| PREDICTED: Canis familiaris similar to discs large
           homolog-associated protein 1 isoform beta, transcript
           variant 5 (LOC480194), mRNA
          Length = 2971

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 cacgcagcgcaactccttccag 142
           ||||||||||||||||||||||
Sbjct: 148 cacgcagcgcaactccttccag 169



to top

>ref|XM_852476.1| PREDICTED: Canis familiaris similar to discs large
           homolog-associated protein 1 isoform beta, transcript
           variant 10 (LOC480194), mRNA
          Length = 2914

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 cacgcagcgcaactccttccag 142
           ||||||||||||||||||||||
Sbjct: 148 cacgcagcgcaactccttccag 169



to top

>ref|XM_852435.1| PREDICTED: Canis familiaris similar to discs large
           homolog-associated protein 1 isoform beta, transcript
           variant 9 (LOC480194), mRNA
          Length = 2926

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 cacgcagcgcaactccttccag 142
           ||||||||||||||||||||||
Sbjct: 148 cacgcagcgcaactccttccag 169



to top

>ref|XM_852393.1| PREDICTED: Canis familiaris similar to discs large
           homolog-associated protein 1 isoform beta, transcript
           variant 8 (LOC480194), mRNA
          Length = 2887

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 cacgcagcgcaactccttccag 142
           ||||||||||||||||||||||
Sbjct: 148 cacgcagcgcaactccttccag 169



to top

>ref|XM_852353.1| PREDICTED: Canis familiaris similar to discs large
           homolog-associated protein 1 isoform beta, transcript
           variant 7 (LOC480194), mRNA
          Length = 2938

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 cacgcagcgcaactccttccag 142
           ||||||||||||||||||||||
Sbjct: 148 cacgcagcgcaactccttccag 169



to top

>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08,
              complete sequence
          Length = 166951

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 276    gttgcgtggcaagcaagatatatata 301
              ||||| ||||||||||||||||||||
Sbjct: 113561 gttgcttggcaagcaagatatatata 113536



to top

>emb|CR847524.5| Zebrafish DNA sequence from clone DKEY-77M9 in linkage group 14,
             complete sequence
          Length = 149148

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 255   agatctgctgctgctcgtgctg 276
             ||||||||||||||||||||||
Sbjct: 51879 agatctgctgctgctcgtgctg 51858



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 276      gttgcgtggcaagcaagatatatata 301
                ||||| ||||||||||||||||||||
Sbjct: 31940695 gttgcttggcaagcaagatatatata 31940670



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 258     tctgctgctgctcgtgctgttg 279
               ||||||||||||||||||||||
Sbjct: 1868877 tctgctgctgctcgtgctgttg 1868856



to top

>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0001H02
          Length = 147160

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 258   tctgctgctgctcgtgctgttg 279
             ||||||||||||||||||||||
Sbjct: 69355 tctgctgctgctcgtgctgttg 69334



to top

>gb|AC154643.2| Mus musculus BAC clone RP23-277M12 from 13, complete sequence
          Length = 182420

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 298   tatacccctctctccatatata 319
             ||||||||||||||||||||||
Sbjct: 35521 tatacccctctctccatatata 35542



to top

>dbj|AK065819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D01, full
           insert sequence
          Length = 2343

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 276 gttgcgtggcaagcaagatatatata 301
           ||||| ||||||||||||||||||||
Sbjct: 306 gttgcttggcaagcaagatatatata 331



to top

>dbj|AB101645.1| Oryza sativa (japonica cultivar-group) Roc2 mRNA for GL2-type
           homeodomain protein, complete cds
          Length = 3063

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 276 gttgcgtggcaagcaagatatatata 301
           ||||| ||||||||||||||||||||
Sbjct: 68  gttgcttggcaagcaagatatatata 93



to top

>emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in linkage group 14, complete
              sequence
          Length = 231054

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 255    agatctgctgctgctcgtgctg 276
              ||||||||||||||||||||||
Sbjct: 109893 agatctgctgctgctcgtgctg 109872



to top

>gb|AC102892.9| Mus musculus chromosome 5, clone RP24-362B10, complete sequence
          Length = 158043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   tgtgtgtgtgaagaaatggaa 391
             |||||||||||||||||||||
Sbjct: 44498 tgtgtgtgtgaagaaatggaa 44478



to top

>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence
          Length = 226006

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  tgtgtgtgtgaagaaatggaa 391
            |||||||||||||||||||||
Sbjct: 3955 tgtgtgtgtgaagaaatggaa 3935



to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 260     tgctgctgctcgtgctgttgc 280
               |||||||||||||||||||||
Sbjct: 3207361 tgctgctgctcgtgctgttgc 3207341



to top

>gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, complete sequence
          Length = 196977

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 371  tgtgtgtgtgaagaaatggaa 391
            |||||||||||||||||||||
Sbjct: 8712 tgtgtgtgtgaagaaatggaa 8732



to top

>gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete sequence
          Length = 182627

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 291   agatatatatacccctctctccatatata 319
             |||||||||||| |||||||| |||||||
Sbjct: 99617 agatatatatacacctctctctatatata 99589



to top

>gb|BC056534.1| Danio rerio tissue inhibitor of metalloproteinase 2, like, mRNA
           (cDNA clone MGC:65967 IMAGE:6791963), complete cds
          Length = 1899

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 tctgctgctgctcgtgctgt 277
           ||||||||||||||||||||
Sbjct: 123 tctgctgctgctcgtgctgt 142



to top

>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940128D9, complete sequence
          Length = 128585

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ctgctgctgctcgtgctgtt 278
             ||||||||||||||||||||
Sbjct: 29660 ctgctgctgctcgtgctgtt 29641



to top

>ref|XM_854820.1| PREDICTED: Canis familiaris similar to zinc finger protein 608,
           transcript variant 2 (LOC481484), mRNA
          Length = 6033

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 tgctgctgctcgtgctgttg 279
           ||||||||||||||||||||
Sbjct: 682 tgctgctgctcgtgctgttg 663



to top

>ref|XM_538605.2| PREDICTED: Canis familiaris similar to zinc finger protein 608,
           transcript variant 1 (LOC481484), mRNA
          Length = 6002

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 tgctgctgctcgtgctgttg 279
           ||||||||||||||||||||
Sbjct: 651 tgctgctgctcgtgctgttg 632



to top

>emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 in linkage group 9,
              complete sequence
          Length = 210207

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    tgtactacaccatctttgtt 346
              ||||||||||||||||||||
Sbjct: 114370 tgtactacaccatctttgtt 114351



to top

>gb|AC008759.9| Homo sapiens chromosome 19 clone CTD-3116E22, complete sequence
          Length = 206395

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   ggaggggaaggagagagatg 366
             ||||||||||||||||||||
Sbjct: 60977 ggaggggaaggagagagatg 60996



to top

>dbj|AK122974.1| Homo sapiens cDNA FLJ16721 fis, clone UTERU3001632, weakly  similar
            to Homo sapiens zinc finger protein 135 (clone pHZ-17)
            (ZNF135)
          Length = 4409

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  ggaggggaaggagagagatg 366
            ||||||||||||||||||||
Sbjct: 3505 ggaggggaaggagagagatg 3486



to top

>emb|AL935286.14| Zebrafish DNA sequence from clone CH211-198E14 in linkage group 22,
             complete sequence
          Length = 211297

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cgtcctagatctctctctct 226
             ||||||||||||||||||||
Sbjct: 96913 cgtcctagatctctctctct 96932



to top

>ref|XM_315491.2| Anopheles gambiae str. PEST ENSANGP00000021218 (ENSANGG00000018729),
            partial mRNA
          Length = 3450

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  atctgctgctgctcgtgctg 276
            ||||||||||||||||||||
Sbjct: 3266 atctgctgctgctcgtgctg 3285



to top

>emb|AL840629.24| Mouse DNA sequence from clone RP23-334A5 on chromosome 4, complete
              sequence
          Length = 214140

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    gtgtgtgtgaagaaatggaa 391
              ||||||||||||||||||||
Sbjct: 189383 gtgtgtgtgaagaaatggaa 189364



to top

>emb|CT486008.9| Mouse DNA sequence from clone RP24-112G3 on chromosome 17, complete
             sequence
          Length = 129106

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   atgtgtgtgtgaagaaatggaagg 393
             ||||||||||||||||||| ||||
Sbjct: 24941 atgtgtgtgtgaagaaatgcaagg 24918



to top

>emb|AL645974.7| Mouse DNA sequence from clone RP23-249M13 on chromosome 11, complete
             sequence
          Length = 136134

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   tctgctgctgctcgtgctgt 277
             ||||||||||||||||||||
Sbjct: 35819 tctgctgctgctcgtgctgt 35838


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9,078,886
Number of Sequences: 3902068
Number of extensions: 9078886
Number of successful extensions: 94736
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94613
Number of HSP's gapped (non-prelim): 123
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top