>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein|
           2.4) (High sulfur keratin-associated protein 2.4)
          Length = 128

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 41  PTRRPL--PPTMSRIRLCRRSSCFLCPSSFTSPIQRPCFRRSSYIQPKS 181
           P RRP+   P   +   CR  +C  CPSS T+ + RPC   ++  QP S
Sbjct: 57  PCRRPVCCDPCSLQEGCCRPITC--CPSSCTAVVCRPCCWATTCCQPVS 103

>TBX6_BRARE (P79742) T-box transcription factor TBX6 (T-box protein 6)|
          Length = 473

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +2

Query: 32  HRVPTRRPLPPTMSRIRLCRRS---------SCFLCPSSFTSPIQRPCFRRSS 163
           H +  R PLPP +SR++L   +         S    P   T+ + R CFR S+
Sbjct: 368 HDLDVRLPLPPKLSRVQLSESALRNLEMSPLSDCANPRPLTNILNRSCFRAST 420

>CID_DROYA (O77027) Protein cubitus interruptus (Fragment)|
          Length = 403

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 23  SSLHRVPTRRPLPPTMSRIRLCRRSSCFLCPSSFTSPIQRPCFRRSS 163
           S +  +PT RP+P            SC    +SF  PI   C RRSS
Sbjct: 343 SQVSSIPTMRPIP------------SCTTTAASFYDPISPGCSRRSS 377

>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2319

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 352  HVRRIVSSGHPGPRALPERLPCRSRPC 432
            H R I   G  GPR      PC S+PC
Sbjct: 1231 HFRCICLPGFTGPRCQTALFPCESQPC 1257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,692,016
Number of Sequences: 219361
Number of extensions: 634174
Number of successful extensions: 2567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2566
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)