ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 50 4e-04
2ref|XM_509053.1| PREDICTED: Pan troglodytes similar to amiloride... 38 1.6
3gb|AC025154.31| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Can... 38 1.6
4gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 36 6.2

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 1      aaattcatccagcgagcgagggcgc 25
              |||||||||||||||||||||||||
Sbjct: 142852 aaattcatccagcgagcgagggcgc 142828



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>ref|XM_509053.1| PREDICTED: Pan troglodytes similar to amiloride-sensitive cation
            channel 2, neuronal isoform a; Cation channel,
            amiloride-sensitive, neuronal, 2 (LOC451888), mRNA
          Length = 2451

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 11   agcgagcgagggcgccctc 29
            |||||||||||||||||||
Sbjct: 2172 agcgagcgagggcgccctc 2190



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>gb|AC025154.31| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164813

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 11     agcgagcgagggcgccctc 29
              |||||||||||||||||||
Sbjct: 133762 agcgagcgagggcgccctc 133780



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 9       ccagcgagcgagggcgcc 26
               ||||||||||||||||||
Sbjct: 1630108 ccagcgagcgagggcgcc 1630091


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,657
Number of Sequences: 3902068
Number of extensions: 129657
Number of successful extensions: 29239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29137
Number of HSP's gapped (non-prelim): 102
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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