>RHLB_XYLFA (Q9PA24) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 543

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 157 KSAQSRRDLHPRAGRCPASEAGGGNRRPRAEADRE 53
           + +   RD  PR G+ P S+ GGG RR +   + E
Sbjct: 429 RGSPGERDGRPRVGKGPRSDGGGGRRRTKFRLETE 463

>PJA1_MOUSE (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)|
          Length = 605

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -1

Query: 247 RAANSSRKKTLLSVVPRRAGSKQIRNNQQLKSAQSRRDLHPRAGRCPASEAGGGNRRPRA 68
           RA  S +  +  S +    G    + N  L+  + R++L  R  R P S  GGG   P++
Sbjct: 147 RAELSKQNGSSASQISSAEGRAAAKGNNSLE--RERQNLPARPSRAPVSICGGGENTPKS 204

Query: 67  EADREVRSGGRPERAPS 17
             +  VR   R    P+
Sbjct: 205 AEEPVVRPKVRNVATPN 221

>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 2 (Membrane-associated
            guanylate kinase inverted 2) (MAGI-2)
            (Atrophin-1-interacting protein 1)
            (Atrophin-1-interacting protein A)
          Length = 1455

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
 Frame = -1

Query: 229  RKKTLLSVVPRRAGSKQIRNNQQLKSAQSRRDLHPRAGRCPASEA--------------- 95
            +KK  L     R+ S Q     +L+ A   +   P AGR PASEA               
Sbjct: 1305 QKKQRLGEQRERSASPQRAARPRLEEAPGGQG-RPEAGR-PASEARAPGLAAADAADAAR 1362

Query: 94   GGGNRRPRAEADREVRSGGRPERAPSLAG 8
             GG   PRA A  E+     P  AP+ AG
Sbjct: 1363 AGGKEAPRAAAGSELCRREGPGAAPAFAG 1391

>SIRT3_HUMAN (Q9NTG7) NAD-dependent deacetylase sirtuin-3, mitochondrial|
           precursor (EC 3.5.1.-) (SIR2-like protein 3) (hSIRT3)
          Length = 399

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 23  RPLRSPPRAHLPIRFRPWPAVSSPRF 100
           RPL+ PPR  +P  FR  P  ++P F
Sbjct: 65  RPLQRPPRPEVPRAFRRQPRAAAPSF 90

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 127  PRAGRCPASEAGGGNR---RPRAEADREVRSGGRP 32
            P AGR PA   GGG +    PR E   E R G RP
Sbjct: 900  PEAGRKPARGVGGGGQGPPPPRRENRTETRWGPRP 934

>CUED1_HUMAN (Q9NWM3) CUE domain-containing protein 1|
          Length = 386

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 2   NSSSERGRPLRSPPRAHLPIRFRPWPAVSSPRFTRWAATGAGVEIPPR 145
           +SS E   P+ SPP  H+ +  RP+P        R  A G+G     R
Sbjct: 121 DSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPTSQR 168

>RL15_STRMU (Q8DS31) 50S ribosomal protein L15|
          Length = 146

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 163 QLKSAQSRRDLHPRAGRCPASEAGGGNRRPRAEADREVRSGG 38
           +LK AQ  R    R GR   S +G G    R +  ++ RSGG
Sbjct: 5   ELKPAQGSRKTRNRVGR--GSSSGNGKTAGRGQKGQKARSGG 44

>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
           kinase)
          Length = 1321

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 26  PLRSPPRAHL-PIRFRPWPAVSSPRFTRWAATGAGVEIPPRLGRFQL 163
           P+R+PP +   P+R   +  V+SP   R +     VE+P R  R  L
Sbjct: 434 PVRAPPDSPTTPVRSLRYRRVNSPESERLSTADGRVELPERRSRMDL 480

>NPH3_ORYSA (Q5KS50) Coleoptile phototropism protein 1 (Non-phototropic|
           hypocotyl 3-like protein) (NPH3-like protein)
          Length = 762

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 74  WPAVSSPRFTRWAATGAG 127
           W A ++PR  RWA TGAG
Sbjct: 200 WKACANPRGVRWAYTGAG 217

>GLB1_MAIZE (P15590) Globulin-1 S allele precursor (GLB1-S) (7S-like)|
          Length = 573

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 100 EAGGGNRRPRAEADREVRSGGRPER 26
           E+GG   R + E +RE R GGR ER
Sbjct: 510 ESGGHEEREQEEEEREERHGGRGER 534

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 127  PRAGRCPASEAGGGNR---RPRAEADREVRSGGRP 32
            P AGR PA   G G +    PR E+  E R G RP
Sbjct: 899  PEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRP 933

>RDRP_PAV (Q9J7Z2) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
            replicase) (Protein A)
          Length = 973

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 17/76 (22%)
 Frame = -1

Query: 208  VVPRRAGSKQIRNNQQ------------LKSAQSRRDLHPRAGRCPASEAGGGNRRP--- 74
            VVP  AG  + R+                K+ + R    P A R  A  AG GNRR    
Sbjct: 876  VVPEMAGHSERRDKSSNPRPGGKAEGLSSKAGKPRVPTRPAADRKAA--AGSGNRRGPTN 933

Query: 73   --RAEADREVRSGGRP 32
              R   DR  R GGRP
Sbjct: 934  GRRPIRDRAPRGGGRP 949

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 127  PRAGRCPASEAGGGNR---RPRAEADREVRSGGRP 32
            P AGR PA   G G +    PR E+  E R G RP
Sbjct: 896  PEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRP 930

>CDPK3_PLAYO (Q7RAV5) Calcium-dependent protein kinase 3 (EC 2.7.11.1)|
          Length = 538

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 130 GDPSEIGPISVAGCFGFACCLRGAGLLIAVFFSG 231
           G P  + P  + GC+ + C L  AG+L  +   G
Sbjct: 272 GTPYYVAPQVLTGCYDYKCDLWSAGVLFYIILCG 305

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -1

Query: 199 RRAGSKQIRNNQQLKSAQSRRDLHPRAGRCPASEAGGGNR----RPRAEADREVRSGGRP 32
           R     + R+   L  ++S R   P   R P+  A   +R    RPR  +   V   G P
Sbjct: 282 RSRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPAHRPRRHSSSRVNPPGPP 341

Query: 31  ERAPS 17
            R P+
Sbjct: 342 PRRPA 346

>CD8B_FELCA (P79336) T-cell surface glycoprotein CD8 beta chain precursor (CD8b|
           antigen)
          Length = 210

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 233 LPEKNTAISSPAPRRQQANPKQPATEIGP 147
           LP  +     P PR++   P  P T+ GP
Sbjct: 138 LPTNSQPTKKPTPRKKMCRPPSPVTQKGP 166

>HSP1_MURBR (P83211) Sperm protamine P1 precursor|
          Length = 107

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 129 TPAPVAAQRVKRGEETAGHGRK 64
           TP P  A+R K  EE  GHGR+
Sbjct: 16  TPQPREAKRYKEEEEFPGHGRR 37

>RLUB_VIBCH (Q9KSS7) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 321

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -1

Query: 226 KKTLLSVVPRRAGSKQIRNNQQ-----LKSAQSRRDLHP-RAGRCPASEAGGGNRRPRAE 65
           K+T+L++ P  A  K+ R   Q     ++  + R    P R+G+ PA    GG    R +
Sbjct: 249 KETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKPGGESSTRNK 308

Query: 64  ADREVRSGGRP 32
              + +S  +P
Sbjct: 309 VANQQQSSRKP 319

>META_BRUSU (Q8FWG9) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine|
           O-transsuccinylase) (HTS)
          Length = 306

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 32  RSPPRAHLPIRFRPWPAVSSPRFTRWAATGAGVEIPP 142
           R  P  H+   + PW  V+  RF  +  TGA VE  P
Sbjct: 78  RHTPADHMLSFYCPWEEVNDQRFDGFVITGAPVERLP 114

>META_BRUME (Q8YBV5) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine|
           O-transsuccinylase) (HTS)
          Length = 306

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 32  RSPPRAHLPIRFRPWPAVSSPRFTRWAATGAGVEIPP 142
           R  P  H+   + PW  V+  RF  +  TGA VE  P
Sbjct: 78  RHTPADHMLSFYCPWEEVNDQRFDGFVITGAPVERLP 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,280,493
Number of Sequences: 219361
Number of extensions: 675231
Number of successful extensions: 2568
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2565
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)