ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY325488.1| Cavia porcellus clone pGP1 5S ribosomal RNA gene,... 44 0.24
2gb|AC105743.8| Oryza sativa chromosome 3 BAC OSJNBa0035N15 genom... 44 0.24
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.24
4gb|AY123637.1| Strumigenys sp. Matzu CB internal transcribed spa... 44 0.24
5gb|AY121815.1| Strumigenys formosensis internal transcribed spac... 44 0.24
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
7ref|XM_470282.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.97
8ref|XM_952897.1| Neurospora crassa OR74A hypothetical protein (N... 42 0.97
9ref|XM_327647.1| Neurospora crassa OR74A hypothetical protein (N... 42 0.97
10emb|BX883049.1| Rattus norvegicus chromosome 20, major histocomp... 42 0.97
11emb|BX883048.1| Rattus norvegicus chromosome 20, major histocomp... 42 0.97
12emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 42 0.97
13gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 geno... 42 0.97
14ref|NG_004527.1| Rattus norvegicus RT1 class I gene RT1-O2 (RT1-... 42 0.97
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
17ref|XM_574718.1| PREDICTED: Rattus norvegicus similar to class I... 42 0.97
18dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
19dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
20dbj|AK121575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.97
21emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 0.97
22dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 0.97
23ref|NM_188246.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
24ref|XM_466415.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
25ref|XM_472838.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
26gb|BT019254.1| Zea mays clone Contig927.F mRNA sequence 40 3.8
27gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
28ref|XM_422695.1| PREDICTED: Gallus gallus similar to procollagen... 40 3.8
29emb|AL109865.36|HSG120K12 Human DNA sequence from clone GS1-120K... 40 3.8
30emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4,... 40 3.8
31gb|AC026904.7| Homo sapiens chromosome 8, clone RP11-567J20, com... 40 3.8
32gb|AY123633.1| Strumigenys orchidensis internal transcribed spac... 40 3.8
33gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, ... 40 3.8
34gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, ... 40 3.8
35gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.8
36dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
37dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
40dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
41dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
42dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
43dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
44gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 3.8 
>gb|AY325488.1| Cavia porcellus clone pGP1 5S ribosomal RNA gene, complete sequence
          Length = 723

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 8   gccgccgccgctccccacgctc 29
           ||||||||||||||||||||||
Sbjct: 615 gccgccgccgctccccacgctc 636
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>gb|AC105743.8| Oryza sativa chromosome 3 BAC OSJNBa0035N15 genomic sequence, complete
             sequence
          Length = 171120

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 4     ccgcgccgccgccgctccccacgctc 29
             |||||||||||| |||||||||||||
Sbjct: 83403 ccgcgccgccgctgctccccacgctc 83378
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 4        ccgcgccgccgccgctccccacgctc 29
                |||||||||||| |||||||||||||
Sbjct: 18694482 ccgcgccgccgctgctccccacgctc 18694507



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 71      tccgccgtctcccacgcggcg 91
               |||||||||||||||||||||
Sbjct: 3660400 tccgccgtctcccacgcggcg 3660420
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>gb|AY123637.1| Strumigenys sp. Matzu CB internal transcribed spacer 1, partial
           sequence
          Length = 962

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 25  cgctcgtcgggcacacgccgtc 46
           ||||||||||||||||||||||
Sbjct: 546 cgctcgtcgggcacacgccgtc 525
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>gb|AY121815.1| Strumigenys formosensis internal transcribed spacer 1, complete
           sequence
          Length = 975

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 25  cgctcgtcgggcacacgccgtc 46
           ||||||||||||||||||||||
Sbjct: 541 cgctcgtcgggcacacgccgtc 520
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 4        ccgcgccgccgccgctccccacgctc 29
                |||||||||||| |||||||||||||
Sbjct: 18688523 ccgcgccgccgctgctccccacgctc 18688548



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 71      tccgccgtctcccacgcggcg 91
               |||||||||||||||||||||
Sbjct: 3660511 tccgccgtctcccacgcggcg 3660531
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>ref|XM_470282.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   tccgccgtctcccacgcggcg 91
            |||||||||||||||||||||
Sbjct: 1019 tccgccgtctcccacgcggcg 999
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>ref|XM_952897.1| Neurospora crassa OR74A hypothetical protein (NCU07362.1) partial
           mRNA
          Length = 1563

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   aagccgcgccgccgccgctcc 21
           |||||||||||||||||||||
Sbjct: 356 aagccgcgccgccgccgctcc 376
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>ref|XM_327647.1| Neurospora crassa OR74A hypothetical protein (NCU07362.1) partial
           mRNA
          Length = 1563

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   aagccgcgccgccgccgctcc 21
           |||||||||||||||||||||
Sbjct: 356 aagccgcgccgccgccgctcc 376
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>emb|BX883049.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
           assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
           RT1n haplotype; segment 8/11
          Length = 349476

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 cgggcgggggcggcaccgcgg 229
           |||||||||||||||||||||
Sbjct: 260 cgggcgggggcggcaccgcgg 240
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>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 7/11
          Length = 349943

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    cgggcgggggcggcaccgcgg 229
              |||||||||||||||||||||
Sbjct: 341328 cgggcgggggcggcaccgcgg 341308
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      cgccgccgccgctccccacgc 27
              |||||||||||||||||||||
Sbjct: 143702 cgccgccgccgctccccacgc 143722
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>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete
              sequence
          Length = 160738

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     tccgccgtctcccacgcggcg 91
              |||||||||||||||||||||
Sbjct: 120977 tccgccgtctcccacgcggcg 120957
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>ref|NG_004527.1| Rattus norvegicus RT1 class I gene RT1-O2 (RT1-O2) pseudogene on
            chromosome 20
          Length = 5522

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  cgggcgggggcggcaccgcgg 229
            |||||||||||||||||||||
Sbjct: 2453 cgggcgggggcggcaccgcgg 2433
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 7        cgccgccgccgctccccacgc 27
                |||||||||||||||||||||
Sbjct: 30876181 cgccgccgccgctccccacgc 30876201



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 72       ccgccgtctcccacgcggcg 91
                ||||||||||||||||||||
Sbjct: 23604932 ccgccgtctcccacgcggcg 23604951
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 7        cgccgccgccgctccccacgc 27
                |||||||||||||||||||||
Sbjct: 29374648 cgccgccgccgctccccacgc 29374668
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>ref|XM_574718.1| PREDICTED: Rattus norvegicus similar to class I histocompatibility
           antigen alpha chain - cotton-top tamarin (LOC499402),
           mRNA
          Length = 1736

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 209 cgggcgggggcggcaccgcgg 229
           |||||||||||||||||||||
Sbjct: 886 cgggcgggggcggcaccgcgg 906
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>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0621D05
          Length = 180250

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     cgccgccgccgctccccacgc 27
             |||||||||||||||||||||
Sbjct: 85529 cgccgccgccgctccccacgc 85549
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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0018H04
          Length = 142053

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      cgccgccgccgctccccacgc 27
              |||||||||||||||||||||
Sbjct: 137446 cgccgccgccgctccccacgc 137466
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>dbj|AK121575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036H02, full
            insert sequence
          Length = 1540

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   tccgccgtctcccacgcggcg 91
            |||||||||||||||||||||
Sbjct: 1108 tccgccgtctcccacgcggcg 1088
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     cgccgccgccgctccccacgc 27
             |||||||||||||||||||||
Sbjct: 52758 cgccgccgccgctccccacgc 52778
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 140     ggctgcgcgccggcggcgagc 160
               |||||||||||||||||||||
Sbjct: 2073259 ggctgcgcgccggcggcgagc 2073279
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>ref|NM_188246.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 3  gccgcgccgccgccgctccc 22
          ||||||||||||||||||||
Sbjct: 52 gccgcgccgccgccgctccc 71
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>ref|XM_466415.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 678

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 ggcgggggcggcaccgcggc 230
           ||||||||||||||||||||
Sbjct: 284 ggcgggggcggcaccgcggc 265
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>ref|XM_472838.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2622

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ccgccgtctcccacgcggcg 91
            ||||||||||||||||||||
Sbjct: 2438 ccgccgtctcccacgcggcg 2457
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>gb|BT019254.1| Zea mays clone Contig927.F mRNA sequence
          Length = 1008

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 ggccacgccctgcagctcct 129
           ||||||||||||||||||||
Sbjct: 904 ggccacgccctgcagctcct 885
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>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10,
             complete sequence
          Length = 149870

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    cgccgccgctccccacgctcgtcg 33
             |||||||||||||||| |||||||
Sbjct: 91144 cgccgccgctccccaccctcgtcg 91121
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>ref|XM_422695.1| PREDICTED: Gallus gallus similar to procollagen-lysine,
            2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2
            isoform a; Procollagen-lysine, 2-oxoglutarate
            5-dioxygenase (lysine hydroxylase) (LOC424882), mRNA
          Length = 3460

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 4    ccgcgccgccgccgctccccacgc 27
            |||| |||||||||||||||||||
Sbjct: 1023 ccgcaccgccgccgctccccacgc 1000
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>emb|AL109865.36|HSG120K12 Human DNA sequence from clone GS1-120K12 on chromosome 1q25.3-31.2
             Contains the 5' end of the C1orf24 gene for chromosome 1
             open reading frame 24, the RNF2 gene for ring finger
             protein 2, a ferritin heavy polypeptide (FTH) pseudogene
             and the 3' end of the C1orf25 gene for chromosome 1 open
             reading frame 25, complete sequence
          Length = 201823

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   gcgccgggcgggggcggcac 224
             ||||||||||||||||||||
Sbjct: 34570 gcgccgggcgggggcggcac 34589
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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ccgccgtctcccacgcggcg 91
             ||||||||||||||||||||
Sbjct: 47613 ccgccgtctcccacgcggcg 47632
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>gb|AC026904.7| Homo sapiens chromosome 8, clone RP11-567J20, complete sequence
          Length = 175369

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   cggaggcgccgggcgggggc 219
             ||||||||||||||||||||
Sbjct: 54608 cggaggcgccgggcgggggc 54627
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>gb|AY123633.1| Strumigenys orchidensis internal transcribed spacer 1, partial
           sequence
          Length = 927

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 27  ctcgtcgggcacacgccgtc 46
           ||||||||||||||||||||
Sbjct: 504 ctcgtcgggcacacgccgtc 485
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>gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, promoter region and
            complete cds
          Length = 3958

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    gcgccgccgccgctccccac 25
            ||||||||||||||||||||
Sbjct: 3367 gcgccgccgccgctccccac 3348
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>gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, complete cds
          Length = 1394

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   gcgccgccgccgctccccac 25
           ||||||||||||||||||||
Sbjct: 803 gcgccgccgccgctccccac 784
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 139     gggctgcgcgccggcggcga 158
               ||||||||||||||||||||
Sbjct: 1998991 gggctgcgcgccggcggcga 1999010
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      agccgcgccgccgccgctccccac 25
              |||| |||||||||||||||||||
Sbjct: 807662 agccccgccgccgccgctccccac 807685
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 10       cgccgccgctccccacgctcgtcg 33
                |||||||||||||||| |||||||
Sbjct: 20092819 cgccgccgctccccaccctcgtcg 20092796
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 211      ggcgggggcggcaccgcggc 230
                ||||||||||||||||||||
Sbjct: 22254432 ggcgggggcggcaccgcggc 22254451
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 3       gccgcgccgccgccgctccc 22
               ||||||||||||||||||||
Sbjct: 5215571 gccgcgccgccgccgctccc 5215552
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>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1267B06
          Length = 156989

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   ggcgggggcggcaccgcggc 230
             ||||||||||||||||||||
Sbjct: 13076 ggcgggggcggcaccgcggc 13095
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>dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0419B01
          Length = 149610

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     gccgcgccgccgccgctccc 22
             ||||||||||||||||||||
Sbjct: 10822 gccgcgccgccgccgctccc 10803
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>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1342F01
          Length = 153287

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    ggcgggggcggcaccgcggc 230
              ||||||||||||||||||||
Sbjct: 150276 ggcgggggcggcaccgcggc 150295
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>dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1138_B05
          Length = 113982

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 2    agccgcgccgccgccgctccccac 25
            |||| |||||||||||||||||||
Sbjct: 6418 agccccgccgccgccgctccccac 6441
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     gctgcgcgccggcggcgagc 160
               ||||||||||||||||||||
Sbjct: 4160594 gctgcgcgccggcggcgagc 4160613


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,279,411
Number of Sequences: 3902068
Number of extensions: 2279411
Number of successful extensions: 73963
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71956
Number of HSP's gapped (non-prelim): 2007
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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