ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44h09 |
|---|---|
| Clone Library Name | barley_pub |
>UCP8_SCHPO (O94685) UBA domain-containing protein 8| Length = 884 Score = 30.8 bits (68), Expect = 1.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +1 Query: 16 PM*PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHP 171 P P T HH PP V S+ S+ P LT A SS P+ Y+ P Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPM---NYVSQP 777
>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) Length = 1706 Score = 30.8 bits (68), Expect = 1.0 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +1 Query: 16 PM*PALNATALTPHHHAPPLVHLSLPSSV--IPTSLTLAVSSPPLLASTYIPHPS 174 P P L +L+ PPL+ + PSS P LT+A PPLL + + HPS Sbjct: 938 PSSPPLQTASLSSGQ-LPPLLTPTEPSSPPPCPPVLTVATPPPPLLPTVPLSHPS 991 Score = 29.3 bits (64), Expect = 3.0 Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Frame = +1 Query: 4 TPSRPM*PALNATALTPHHHAPPL---VHLSLPSSVI-------PTSLTLAVSSPPLLAS 153 TP+ P P LT PPL V LS PSS P S T A S P+L+ Sbjct: 958 TPTEPSSPPPCPPVLTVATPPPPLLPTVPLSHPSSDASPQQCPSPFSNTTAQSPLPILSP 1017 Query: 154 TYIPHPSQI 180 T P PS I Sbjct: 1018 TVSPSPSPI 1026
>BFA1_YEAST (P47113) Mitotic check point protein BFA1 (Cell cycle arrest| protein BFA1) Length = 574 Score = 30.8 bits (68), Expect = 1.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 76 VHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPSQI 180 ++ +LP +LTL + PPL STYIP PS + Sbjct: 21 LNTTLPRFQSHETLTLEENVPPLSTSTYIPPPSSV 55
>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein G3B) Length = 1718 Score = 30.8 bits (68), Expect = 1.0 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +1 Query: 16 PM*PALNATALTPHHHAPPLVHLSLPSS--VIPTSLTLAVSSPPLLASTYIPHPS 174 P PAL +L+ PPL+ + PSS P LT+A PPLL + +P PS Sbjct: 946 PSSPALQTPSLSSGQ-LPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPS 999
>NFIC_MOUSE (P70255) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)| (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 439 Score = 30.0 bits (66), Expect = 1.7 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +1 Query: 40 TALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSP--PLLASTYIPH 168 ++ T HH VH + S PTS ++P P ASTY PH Sbjct: 347 SSFTQHHRPVIAVHSGIARSPHPTSALHFPATPILPQTASTYFPH 391
>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2| Length = 640 Score = 29.3 bits (64), Expect = 3.0 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 11/63 (17%) Frame = +1 Query: 25 PALNATALTPH--HHAPPLV--HLSLPSSVIPTSLTL-----AVSSPPLLASTYIP--HP 171 P +N A H + PP + HL+ S L L A+ +PP L STY+P HP Sbjct: 329 PLMNKKARISHLTNRVPPTLNGHLNPTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHP 388 Query: 172 SQI 180 QI Sbjct: 389 PQI 391
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 29.3 bits (64), Expect = 3.0 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +1 Query: 16 PM*PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSS--PPLL 147 P+ P T++ P PP++ SLP+SV P + ++SS PP+L Sbjct: 509 PVMPPALPTSIPPPGMPPPVMPPSLPTSVPPPGMPPSLSSGPPPVL 554
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 28.9 bits (63), Expect = 3.9 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +1 Query: 16 PM*PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPSQI 180 P PAL A+ P PPL + +P P + PPLL + PH SQ+ Sbjct: 1043 PPPPALPGVAIPP---PPPLPGMGVPPPAPPPP-GAGIPPPPLLPGSGPPHSSQV 1093
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 28.9 bits (63), Expect = 3.9 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPSQI 180 P+ + T +P+ H PP + LS + + TL P T+ PS++ Sbjct: 1261 PSASPTHRSPNFHLPPHIPLSYDRDFVTVNSTLPDQGPETRLDTHFLPPSRL 1312
>PO4F2_MOUSE (Q63934) POU domain, class 4, transcription factor 2| (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2) Length = 411 Score = 28.9 bits (63), Expect = 3.9 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +1 Query: 55 HHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPSQITAQANH 198 HHH PP P + T T+ +S +S I HPS + +H Sbjct: 128 HHHHPPHHSPFKPDATYHTMNTIPCTSAASSSSVPISHPSALAGTHHH 175
>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPSQI 180 P+ + T +P+ H PP + LS + + TL P T+ PS++ Sbjct: 1261 PSASPTHRSPNFHLPPHIPLSYDRDFVTVNPTLPDQGPETRLDTHFLPPSRL 1312
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPSQI 180 P+ + T +P+ H PP + LS + + TL P T+ PS++ Sbjct: 1261 PSASPTHRSPNFHLPPHIPLSYDRDFVTVNPTLPDQGPETRLDTHFLPPSRL 1312
>PC11X_PONPY (Q6WXV7) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 28.5 bits (62), Expect = 5.0 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVS-SPPLLASTYIPHPSQI 180 P + +AL HH+PPLV + P++ A+ SPPL + I H S + Sbjct: 1212 PPIQVSAL---HHSPPLVQATALRHSPPSAQASALCYSPPLAQAAAISHSSPL 1261
>PC11X_PANTR (Q71M42) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 28.5 bits (62), Expect = 5.0 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVS-SPPLLASTYIPHPSQI 180 P + +AL HH+PPLV + P++ A+ SPPL + I H S + Sbjct: 1212 PPIQVSAL---HHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPL 1261
>PC11X_PANPA (Q6WYY1) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 28.5 bits (62), Expect = 5.0 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVS-SPPLLASTYIPHPSQI 180 P + +AL HH+PPLV + P++ A+ SPPL + I H S + Sbjct: 1212 PPIQVSAL---HHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPL 1261
>PC11X_HUMAN (Q9BZA7) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) (PCDH-X) (Protocadherin-S) Length = 1347 Score = 28.5 bits (62), Expect = 5.0 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVS-SPPLLASTYIPHPSQI 180 P + +AL HH+PPLV + P++ A+ SPPL + I H S + Sbjct: 1212 PPIQVSAL---HHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPL 1261
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 7 PSRPM*PALNATALTPHHHAPPLVH 81 P RP P A TPHHH+P H Sbjct: 1377 PPRPPSPRYEAPPPTPHHHSPHAHH 1401
>SOX30_MOUSE (Q8CGW4) Transcription factor SOX-30| Length = 782 Score = 28.5 bits (62), Expect = 5.0 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPS 174 P L T P APP + L P+ P+ +TL S +P PS Sbjct: 481 PGLQNTITHPVGEAPPAIQLPTPAVQRPSPITLFQPSVSSTGPVAVPPPS 530
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 28.5 bits (62), Expect = 5.0 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Frame = +1 Query: 7 PSRPM*PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSS-----PPLLASTYIPHP 171 P P P + T + P PPL P V+P S L + PPL IP P Sbjct: 572 PPAPPLPGDSGTVIPPPPPPPPL-----PGGVVPPSPPLPPGTCIPPPPPLPGGACIPPP 626 Query: 172 SQITAQA 192 Q+ A Sbjct: 627 PQLPGSA 633
>TIMD1_MOUSE (Q5QNS5) Hepatitis A virus cellular receptor 1 homolog precursor| (HAVcr-1) (T cell immunoglobulin and mucin domain-containing protein 1) (TIMD-1) (T cell membrane protein 1) (TIM-1) Length = 305 Score = 28.1 bits (61), Expect = 6.6 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +1 Query: 7 PSRPM*PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPSQIT 183 P P P T P P +S S+ +PTS+ ++ S+PP T+ P T Sbjct: 129 PEIPTRPPTRPTTTRPTATGRPTT-ISTRSTHVPTSIRVSTSTPPTSTHTWTHKPEPTT 186
>PC11Y_HUMAN (Q9BZA8) Protocadherin-11 Y-linked precursor (Protocadherin-11)| (Protocadherin-22) (Protocadherin on the Y chromosome) (PCDH-Y) (Protocadherin prostate cancer) (Protocadherin-PC) Length = 1340 Score = 27.7 bits (60), Expect = 8.6 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVS-SPPLLASTYIPHPSQI 180 P + +AL HH+PPLV + P++ A+ SPPL + I H S + Sbjct: 1205 PPIQVSAL---HHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSL 1254
>HLES_DROME (Q02308) Protein hairless| Length = 1077 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +1 Query: 31 LNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPH 168 LN ++ T + PP + +L + PT+ T SS ++ ++PH Sbjct: 93 LNGSSSTSYPPLPPPLPANLSRTTTPTTTTTPSSSSSTASNGFLPH 138
>HXA4_MOUSE (P06798) Homeobox protein Hox-A4 (Hox-1.4) (MH-3)| Length = 285 Score = 27.7 bits (60), Expect = 8.6 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +1 Query: 4 TPSRPM*PALNATALTPHHHAPPLVHLSLPSSVIPTSL 117 T S P P A +PHHH PL S P IP+S+ Sbjct: 251 TASAPAGPPGKAQTHSPHHHPHPLPGASTP---IPSSI 285
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 25 PALNATALTPHHHAPPLVHLSLPSSVIPTSLTLAVSSPPLLASTYIPHPS 174 PA + L P APP + ++ +S P + T+ PP ++T P P+ Sbjct: 1098 PAPTSAPLGPPSQAPPSLVYTVATSTTPPAATILPKGPP-ASATATPAPT 1146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,759,585 Number of Sequences: 219361 Number of extensions: 468628 Number of successful extensions: 2192 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2163 length of database: 80,573,946 effective HSP length: 42 effective length of database: 71,360,784 effective search space used: 1712658816 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
