ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC105324.11| Mus musculus chromosome 15, clone RP24-311E18, c... 36 6.2
2dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 36 6.2
3emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C ... 36 6.2
4gb|AY508229.1| Sodalis glossinidius symbiosis island 2, complete... 36 6.2

>gb|AC105324.11| Mus musculus chromosome 15, clone RP24-311E18, complete sequence
          Length = 171004

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     ggtctccctccgccattt 27
              ||||||||||||||||||
Sbjct: 153438 ggtctccctccgccattt 153455



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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 23      catttttcgctggctgaa 40
               ||||||||||||||||||
Sbjct: 3594012 catttttcgctggctgaa 3593995



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>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5)
          Length = 893329

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     ctccctccgccatttttc 30
              ||||||||||||||||||
Sbjct: 834299 ctccctccgccatttttc 834282



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>gb|AY508229.1| Sodalis glossinidius symbiosis island 2, complete sequence
          Length = 28000

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    catttttcgctggctgaa 40
             ||||||||||||||||||
Sbjct: 13126 catttttcgctggctgaa 13143


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 207,568
Number of Sequences: 3902068
Number of extensions: 207568
Number of successful extensions: 47718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47656
Number of HSP's gapped (non-prelim): 62
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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