>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4|
           precursor (LTBP-4)
          Length = 1666

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 189 VKAALQLPPPCAGTRCDLAERSCGAAHCCC 100
           V    Q PPPC   RCD    + G+ HC C
Sbjct: 754 VDECAQQPPPCGPGRCD---NTAGSFHCAC 780

>FAT2_HUMAN (Q9NYQ8) Protocadherin Fat 2 precursor (hFat2) (Multiple epidermal|
            growth factor-like domains 1)
          Length = 4349

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = -3

Query: 183  AALQLPPPCAGTRCDLAERSCGAAHCCCF------DLAAHKVVVARGEAAAAFTRSETRG 22
            A+   P P  G RC++  R C   HC         D    ++++     A AF    T G
Sbjct: 4008 ASCNCPHPYTGDRCEMEARGCSEGHCLVTPEIQRGDWGQQELLII--TVAVAFIIISTVG 4065

Query: 21   VLFH 10
            +LF+
Sbjct: 4066 LLFY 4069

>ZFH1_DROME (P28166) Zinc finger protein 1 (Zinc finger homeodomain protein 1)|
          Length = 1054

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -1

Query: 395 QQCLPPCLKAASGSWELASSVDVDPLSPATSKPP--LCG*VAGEVSKMRCISNSPWTRGL 222
           QQ LPP L  ++ S    S+ D+D  +P ++  P    G ++G    M+C ++      L
Sbjct: 245 QQLLPPQLPGSNSSVGSNSAYDLDLSAPRSTSSPGSTTGDLSGAYPCMQCTASFASREQL 304

Query: 221 KKAAQANTP 195
           ++  Q ++P
Sbjct: 305 EQHEQLHSP 313

>Y6939_STRAW (Q827I5) UPF0271 protein SAV6939|
          Length = 250

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 359 GSWELASSVDVDPLSPATSKPPLCG*VAGEVSKMRCISNSPWTRGLKKAAQAN 201
           G WEL    D   LS  TS    CG  AG+ + MR +      RG++  AQ +
Sbjct: 13  GRWELTD--DERLLSVVTSANVACGFHAGDAATMRRVCELAAERGVRIGAQVS 63

>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 909

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 425 KPLPA*PSVRQQCLPPCLKAASGSWELASSVDVDPLSPATSKP 297
           KPLPA P  R   L   L    G WE  + + + PL PA   P
Sbjct: 856 KPLPADPLARTTRLTHALARTPGQWE--TGLRLAPLRPAPQYP 896

>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth|
            factor-like domains 1)
          Length = 4351

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 168  PPPCAGTRCDLAERSCGAAHC 106
            P P  G RC++  R C   HC
Sbjct: 4015 PHPYTGDRCEMEARGCSGGHC 4035

>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2|
          Length = 1516

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 84   GQPNQSSSSELRRSFAQQGRSAYPRKEEEAA 176
            G P  S  +ELRRS  ++G +A P + EE A
Sbjct: 1346 GSPPDSVLAELRRSREREGPAASPAENEEGA 1376

>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 24/69 (34%), Positives = 30/69 (43%)
 Frame = +3

Query: 60   LRVQRRLCGQPNQSSSSELRRSFAQQGRSAYPRKEEEAAVRL*LAWCVSLSCLLQAPGPW 239
            L V+      P  +S S +    AQ G S+ PR  E    R    + V LSC   APG  
Sbjct: 1491 LLVRATFSSVPRAASISAVSLEGAQPGPSSGPRALEVEECRCPPGY-VGLSCQDCAPGYT 1549

Query: 240  RIGDASHLG 266
            R G   +LG
Sbjct: 1550 RTGSGLYLG 1558

>GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)|
          Length = 1508

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 244 LEMHRILETSPAT*PHNGG-LEVAGDSGSTSTDEASSQEPLAAFR-HGGRHCCL 399
           L  H    TS A  PH+ G L  A   G+    +A  +EPL  FR H GR  C+
Sbjct: 635 LSGHTAKITSVAWSPHHDGRLVSASYDGTAQVWDALREEPLCNFRGHQGRLLCV 688


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,092,153
Number of Sequences: 219361
Number of extensions: 1203838
Number of successful extensions: 3406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3406
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)