>BRE1_DROME (Q9VRP9) Ubiquitin-protein ligase Bre1 (EC 6.3.2.-) (dBre1)|
          Length = 1044

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/67 (31%), Positives = 38/67 (56%)
 Frame = +3

Query: 78  KMDATALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQLVDDL 257
           +MD   L+ +N+KL Q++E +      L  + ++L   Q+  D  L  +++ WNQL +D+
Sbjct: 44  EMDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVVNRYWNQLNEDI 103

Query: 258 ILLGVRF 278
            +L  RF
Sbjct: 104 RVLLQRF 110

>BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40)
          Length = 1001

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 18/56 (32%), Positives = 36/56 (64%)
 Frame = +3

Query: 78  KMDATALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQL 245
           +MD+  LQ +N+KL ++LE +++    L  + ++L   Q++ D TL+ +++ W QL
Sbjct: 46  EMDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQL 101

>BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40) (Syntaxin-1-interacting RING finger
           protein) (Protein staring)
          Length = 1002

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 18/56 (32%), Positives = 36/56 (64%)
 Frame = +3

Query: 78  KMDATALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQL 245
           +MD+  LQ +N+KL ++LE +++    L  + ++L   Q++ D TL+ +++ W QL
Sbjct: 46  EMDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQL 101

>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40)
          Length = 1001

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 18/56 (32%), Positives = 35/56 (62%)
 Frame = +3

Query: 78  KMDATALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQL 245
           +MD   LQ +N+KL ++LE +++    L  + ++L   Q++ D TL+ +++ W QL
Sbjct: 46  EMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQL 101

>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40) (95 kDa retinoblastoma-associated
           protein) (RBP95)
          Length = 1001

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 18/56 (32%), Positives = 35/56 (62%)
 Frame = +3

Query: 78  KMDATALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQL 245
           +MD   LQ +N+KL ++LE +++    L  + ++L   Q++ D TL+ +++ W QL
Sbjct: 46  EMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQL 101

>RAD50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase|
          Length = 864

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 15/54 (27%), Positives = 34/54 (62%)
 Frame = +3

Query: 96  LQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQLVDDL 257
           L+    +L ++L+   +E++ +E +++ L N ++SYDN +  L K  N+ +++L
Sbjct: 452 LELNKNELEEELKKITNELNKIEREYRRLSNNKASYDNVMRQLKKL-NEEIENL 504

>TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Protein|
           matotopetli)
          Length = 814

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -1

Query: 270 LQAGLNHQQADSTSYPGKSECCRKKIVHSSTP*T*LPTHAF-----QTSALPIAAPASGF 106
           L  G+   + ++   P +   C +K VH+S     +  HA      QTS  P   PA+G 
Sbjct: 212 LATGIESSRKNAAKGPNECTMCDRKFVHASGLVRHMEKHALDLIPSQTSEQPHTIPAAGL 271

Query: 105 HV 100
           HV
Sbjct: 272 HV 273

>FEN_HALSA (Q9HQ27) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 327

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 189 EQSSYDNTLISLDKTWNQLVDDLILLGVRFGGGLN 293
           E   +D TL   D TW QLVD  IL G  F  G++
Sbjct: 198 ELMDFDATLAEHDLTWEQLVDVGILCGTDFNPGID 232

>FANCB_HUMAN (Q8NB91) Fanconi anemia group B protein (Protein FACB) (Fanconi|
           anemia-associated polypeptide of 95 kDa) (FAAP95)
          Length = 859

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/66 (22%), Positives = 37/66 (56%)
 Frame = +3

Query: 78  KMDATALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQLVDDL 257
           K D T+   E + LV     +++ +H+L+ K  +      ++ ++   ++K W +++DD 
Sbjct: 433 KDDNTSSAEEKECLVPLCGEEENSVHILDEKLSD------NFQDSEQLVEKIWYRVIDDS 486

Query: 258 ILLGVR 275
           +++GV+
Sbjct: 487 LVVGVK 492

>MUKB_HAEIN (P45187) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1510

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +3

Query: 108  NQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTW-------NQLVDDLILL 266
            N+KL Q+LE  +++      + ++ +++ + Y+  LI L  ++       N+L+ ++  L
Sbjct: 1025 NEKLRQRLEQMQAQRDTQREQVRQKQSQFAEYNRVLIQLQSSYDSKYQLLNELIGEISDL 1084

Query: 267  GVRFGGG 287
            GVR   G
Sbjct: 1085 GVRADDG 1091

>LUXD1_PHOLE (P21309) Acyl transferase (EC 2.3.1.-) (ACT)|
           (Myristoyl-ACP-specific thioesterase) (C14ACP-TE)
          Length = 315

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +3

Query: 84  DATALQHENQKLVQQLEAQKSEM-------HVLEAKFKELRNEQSSYDNTLISLDKTWNQ 242
           D    QHE + LV  +++ K ++       H L      LRN   S     +SLD+   +
Sbjct: 213 DDWVCQHEVKHLVSNVKSDKKKIYSLVGSSHDLGENLVVLRNFYQSMTKAAVSLDRQLVE 272

Query: 243 LVDDLI 260
           LVD++I
Sbjct: 273 LVDEII 278

>ANT1_ONCVO (P21249) Major antigen (Myosin-like antigen)|
          Length = 2022

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 96  LQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQLVDDLILLGVR 275
           L  EN++L  + +  K+ +  +E ++  +  +    DN L +L+ T  +LV++L     R
Sbjct: 556 LLEENKRLKDENDGMKNRIQDIEKEYNTIIRKLEEKDNALKNLENTRQRLVNELEEQRTR 615

Query: 276 F 278
           F
Sbjct: 616 F 616

>MYSP_BOOMI (Q86RN8) Paramyosin|
          Length = 873

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = +3

Query: 93  ALQHENQKLVQQLEAQKSE-------MHVLEAKFKELRNEQ 194
           ALQ EN+KLV  L   KS+       +H  E + K L NE+
Sbjct: 419 ALQRENKKLVDDLSEAKSQLADAIRRLHEYELEIKRLENER 459

>MYOJ_DICDI (P54697) Myosin IJ heavy chain|
          Length = 2245

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 75   SKMDATALQHENQ--KLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQLV 248
            S +D+T  + EN+  KL QQLE    ++H L+   +EL + + S         K  NQL+
Sbjct: 1645 STIDSTIKEKENEISKLQQQLETSNQQLHQLK---EELNSMKQSNQLESTEQSKQLNQLI 1701

Query: 249  DD 254
             +
Sbjct: 1702 QE 1703

>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)|
            (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte
            nuclear envelope protein 1) (Myne-1) (Enaptin)
          Length = 8797

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 138  QKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQLVDDL 257
            + SE+H   AK++ +  +   Y+N L++L +T   ++  L
Sbjct: 4594 ESSELHTQLAKYQNILEQSPEYENLLLTLQRTGQTILPSL 4633

>YWBM_BACSU (P39596) Hypothetical protein ywbM|
          Length = 385

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 90  TALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYD 206
           +AL  ++  L ++L+ + SE  VL AK+K      +SYD
Sbjct: 319 SALVKDHSDLTEKLDTEFSEFEVLMAKYKTNDQSYTSYD 357

>PCIF1_MOUSE (P59114) Phosphorylated CTD-interacting factor 1|
          Length = 706

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 504 AVCSNSSEGTSQSKSAERRKARALQRIPRSYCHPFFHNCWTSR 376
           ++ S+S   +SQS+    +  R +Q +P    H  +  CW+ R
Sbjct: 14  SLLSHSPGTSSQSQPCSPKPVRLVQDLPEELVHAGWEKCWSRR 56

>TPM1_LIZAU (P84335) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 93  ALQHENQKLVQQLEAQKSEMHVLEAKFKELRNEQSSYDNTLISLDKTWNQLVDDL 257
           +L+ + +K  Q+ +  + E+ VL  K KE        + ++  L+KT + L D+L
Sbjct: 206 SLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,398,476
Number of Sequences: 219361
Number of extensions: 912261
Number of successful extensions: 2862
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2860
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)