ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl44g07 |
|---|---|
| Clone Library Name | barley_pub |
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Frame = +2 Query: 8 GAAGSHPSFSSLPAPVGKPGS----GRHGVGG 91 G AGS P F LP P G PG G GV G Sbjct: 635 GPAGS-PGFQGLPGPAGPPGEAGKPGEQGVPG 665
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Frame = +2 Query: 8 GAAGSHPSFSSLPAPVGKPGS----GRHGVGG 91 G AGS P F LP P G PG G GV G Sbjct: 624 GPAGS-PGFQGLPGPAGPPGEAGKPGEQGVPG 654
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Frame = +2 Query: 8 GAAGSHPSFSSLPAPVGKPGS----GRHGVGG 91 G AGS P F LP P G PG G GV G Sbjct: 624 GPAGS-PGFQGLPGPAGPPGEAGKPGEQGVPG 654
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Frame = +2 Query: 8 GAAGSHPSFSSLPAPVGKPGS----GRHGVGG 91 G AGS P F LP P G PG G GV G Sbjct: 631 GPAGS-PGFQGLPGPAGPPGEAGKPGEQGVPG 661
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Frame = +2 Query: 8 GAAGSHPSFSSLPAPVGKPGS----GRHGVGG 91 G AGS P F LP P G PG G GV G Sbjct: 200 GPAGS-PGFQGLPGPAGPPGEAGKPGEQGVPG 230
>SYC_BRAJA (Q89NP8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 460 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -2 Query: 159 SWHLPRGSPAAGRRGWHL 106 SW P G A GR GWH+ Sbjct: 208 SWPSPAGIAAQGRPGWHI 225
>SYC_BARHE (Q6G5G9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 503 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = -2 Query: 156 WHLPRGSPAAGRRGWHL 106 W P G P GR GWH+ Sbjct: 206 WTSPAGIPVLGRPGWHI 222
>RS5_CORGL (Q8NSX5) 30S ribosomal protein S5| Length = 211 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 216 AAKESGGEDGRPLLFRTYKVKGTLLHP 296 AA + G E+ R FR V GT+ HP Sbjct: 91 AAIQKGAEEARKNFFRVPMVNGTITHP 117
>SYC_BARQU (Q6G073) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 502 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = -2 Query: 156 WHLPRGSPAAGRRGWHL 106 W P G P GR GWH+ Sbjct: 206 WASPAGIPVLGRPGWHI 222
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 284 PPAPIQGANLHSLNCGPSILRMAHQAQQIRHHVVL 388 PPA G + + GP+ L A Q + HHVV+ Sbjct: 1749 PPAERTGRRVAIIGSGPAGLAAADQLNRAGHHVVI 1783 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,461,190 Number of Sequences: 219361 Number of extensions: 627372 Number of successful extensions: 2117 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2006 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2115 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
