ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478670.1| Oryza sativa (japonica cultivar-group), mRNA 121 2e-24
2gb|AF432505.1|AF432505 Oryza sativa cellulose synthase-like prot... 105 1e-19
3gb|AF432504.1|AF432504 Oryza sativa cellulose synthase-like prot... 105 1e-19
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
5dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
6ref|XM_478656.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
7dbj|AK067424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
8dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
9ref|XM_478669.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
10ref|XM_478664.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
11gb|AF432503.1|AF432503 Oryza sativa cellulose synthase-like prot... 56 9e-05
12dbj|AK100523.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
13ref|XM_478666.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
14gb|AF432502.1|AF432502 Oryza sativa cellulose synthase-like prot... 50 0.005
15gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete se... 44 0.34
16dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.34
17ref|XM_478655.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
18gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 42 1.3
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.3
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.3
22gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.3
23ref|XM_519354.1| PREDICTED: Pan troglodytes similar to Inosine-5... 40 5.3
24ref|NM_196798.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.3
25gb|AC169700.1| Rhesus Macaque BAC CH250-20P14 (Children's Hospi... 40 5.3
26gb|AC169697.1| Rhesus Macaque BAC CH250-38L23 (Children's Hospi... 40 5.3
27gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.3
28gb|BC068608.1| Homo sapiens cDNA clone IMAGE:5296989, with appar... 40 5.3
29gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosom... 40 5.3
30gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, compl... 40 5.3
31gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, com... 40 5.3
32gb|AC096640.2| Homo sapiens chromosome 1 clone RP11-332J14, comp... 40 5.3
33ref|NM_018650.2| Homo sapiens MAP/microtubule affinity-regulatin... 40 5.3
34dbj|AK098103.1| Homo sapiens cDNA FLJ40784 fis, clone TRACH20063... 40 5.3
35gb|AC110015.5| Homo sapiens chromosome 18, clone RP11-104H13, co... 40 5.3
36emb|CR591585.1| full-length cDNA clone CL0BB018ZF07 of Neuroblas... 40 5.3
37ref|XM_380142.3| PREDICTED: Homo sapiens hypothetical LOC401399 ... 40 5.3
38ref|XM_938040.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 5.3
39ref|XM_379517.3| PREDICTED: Homo sapiens hypothetical LOC401399 ... 40 5.3
40gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, comp... 40 5.3
41gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.3
42dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
43gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) ch... 40 5.3
44gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromos... 40 5.3
45gb|AC084603.1|CBRG43L07 Caenorhabditis briggsae cosmid G43L07, c... 40 5.3
46dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.3
47ref|XM_309214.2| Anopheles gambiae str. PEST ENSANGP00000016011 ... 40 5.3
48gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromo... 40 5.3
49gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 5.3
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
51gb|AC163645.5| Mus musculus BAC clone RP23-206F16 from chromosom... 40 5.3
52gb|AC132471.4| Mus musculus BAC clone RP23-106E17 from 10, compl... 40 5.3
53dbj|AB040910.1| Homo sapiens mRNA for KIAA1477 protein, partial cds 40 5.3 
>ref|XM_478670.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2607

 Score =  121 bits (61), Expect = 2e-24
 Identities = 183/223 (82%), Gaps = 3/223 (1%)
 Strand = Plus / Plus

                                                                       
Query: 171 gccaagggcaagcactgggaggccgccgacaaggacgagcggcgggccgccaaggagagc 230
           |||||||| ||||||||||  |||||||| ||||  |||||||| || || |||||| ||
Sbjct: 139 gccaaggggaagcactgggccgccgccgataagggggagcggcgcgcggcgaaggagtgc 198

                                                                       
Query: 231 ggcggcgaggacggcag---gccgctgctgttccggacgtacaaggtcaaaggcaccctc 287
           ||||||||||||||| |   ||||||||||||| || |||||| |||||| ||| |||||
Sbjct: 199 ggcggcgaggacggccgccggccgctgctgttcaggtcgtacagggtcaagggctccctc 258

                                                                       
Query: 288 ctgcacccatacagggcgctaatcttcattcgcttaattgtggtccttctattcttcgta 347
           |||||||| |||||||| || |||||    ||||| ||||  || || || ||||||| |
Sbjct: 259 ctgcacccgtacagggctctgatctttgcacgcttgattgccgttctcctcttcttcgga 318

                                                      
Query: 348 tggcgcatcaagcacaacaaatccgacatcatgtggttttgga 390
           ||||| |||| |||||| || || ||||| |||||||| ||||
Sbjct: 319 tggcggatcaggcacaataattctgacataatgtggttctgga 361
to top
>gb|AF432505.1|AF432505 Oryza sativa cellulose synthase-like protein OsCslF4 gene, complete
           cds
          Length = 13642

 Score =  105 bits (53), Expect = 1e-19
 Identities = 115/135 (85%), Gaps = 3/135 (2%)
 Strand = Plus / Plus

                                                                       
Query: 171 gccaagggcaagcactgggaggccgccgacaaggacgagcggcgggccgccaaggagagc 230
           |||||||| ||||||||||  |||||||| ||||  |||||||| || || |||||| ||
Sbjct: 243 gccaaggggaagcactgggccgccgccgataagggggagcggcgcgcggcgaaggagtgc 302

                                                                       
Query: 231 ggcggcgaggacg---gcaggccgctgctgttccggacgtacaaggtcaaaggcaccctc 287
           |||||||||||||   || |||||||||||||| || |||||| |||||| ||| |||||
Sbjct: 303 ggcggcgaggacggccgccggccgctgctgttcaggtcgtacagggtcaagggctccctc 362

                          
Query: 288 ctgcacccatacagg 302
           |||||||| ||||||
Sbjct: 363 ctgcacccgtacagg 377



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 254  gctgttccggacgtacaaggtcaaaggcaccctcctgcacccatacagg 302
            |||||||||||||||||||||||| |||| | ||||||| || ||||||
Sbjct: 7397 gctgttccggacgtacaaggtcaagggcagcatcctgcatccttacagg 7445
to top
>gb|AF432504.1|AF432504 Oryza sativa cellulose synthase-like protein OsCslF3 gene, complete
           cds
          Length = 13642

 Score =  105 bits (53), Expect = 1e-19
 Identities = 115/135 (85%), Gaps = 3/135 (2%)
 Strand = Plus / Plus

                                                                       
Query: 171 gccaagggcaagcactgggaggccgccgacaaggacgagcggcgggccgccaaggagagc 230
           |||||||| ||||||||||  |||||||| ||||  |||||||| || || |||||| ||
Sbjct: 243 gccaaggggaagcactgggccgccgccgataagggggagcggcgcgcggcgaaggagtgc 302

                                                                       
Query: 231 ggcggcgaggacg---gcaggccgctgctgttccggacgtacaaggtcaaaggcaccctc 287
           |||||||||||||   || |||||||||||||| || |||||| |||||| ||| |||||
Sbjct: 303 ggcggcgaggacggccgccggccgctgctgttcaggtcgtacagggtcaagggctccctc 362

                          
Query: 288 ctgcacccatacagg 302
           |||||||| ||||||
Sbjct: 363 ctgcacccgtacagg 377



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 254  gctgttccggacgtacaaggtcaaaggcaccctcctgcacccatacagg 302
            |||||||||||||||||||||||| |||| | ||||||| || ||||||
Sbjct: 7397 gctgttccggacgtacaaggtcaagggcagcatcctgcatccttacagg 7445
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  105 bits (53), Expect = 1e-19
 Identities = 115/135 (85%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                            
Query: 171      gccaagggcaagcactgggaggccgccgacaaggacgagcggcgggccgccaaggagagc 230
                |||||||| ||||||||||  |||||||| ||||  |||||||| || || |||||| ||
Sbjct: 21965467 gccaaggggaagcactgggccgccgccgataagggggagcggcgcgcggcgaaggagtgc 21965408

                                                                            
Query: 231      ggcggcgaggacg---gcaggccgctgctgttccggacgtacaaggtcaaaggcaccctc 287
                |||||||||||||   || |||||||||||||| || |||||| |||||| ||| |||||
Sbjct: 21965407 ggcggcgaggacggccgccggccgctgctgttcaggtcgtacagggtcaagggctccctc 21965348

                               
Query: 288      ctgcacccatacagg 302
                |||||||| ||||||
Sbjct: 21965347 ctgcacccgtacagg 21965333



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 65/76 (85%), Gaps = 3/76 (3%)
 Strand = Plus / Minus

                                                                            
Query: 230      cggcggcgaggacggcaggc---cgctgctgttccggacgtacaaggtcaaaggcaccct 286
                |||||||||||||||| |||   |||||||||||||||||| || |||||  |||| |||
Sbjct: 21861340 cggcggcgaggacggccggcggccgctgctgttccggacgttcacggtcaggggcatcct 21861281

                                
Query: 287      cctgcacccatacagg 302
                ||| ||||| ||||||
Sbjct: 21861280 cctccacccctacagg 21861265



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                                 
Query: 254      gctgttccggacgtacaaggtcaaaggcaccctcctgcacccatacagg 302
                |||||||||||||||||||||||| |||| | ||||||| || ||||||
Sbjct: 21958313 gctgttccggacgtacaaggtcaagggcagcatcctgcatccttacagg 21958265



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 242      cggcaggccgctgctgttccggacgtacaaggtcaaaggca 282
                |||| |||||| |||||||||||||||||||||||| ||||
Sbjct: 21899108 cggccggccgccgctgttccggacgtacaaggtcaagggca 21899148



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 247      ggccgctgctgttccggacgtacaaggtcaaaggca 282
                |||||| |||||||||||||||||||||||| ||||
Sbjct: 21917080 ggccgccgctgttccggacgtacaaggtcaagggca 21917115



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 242      cggcaggccgctgctgttccggacgtacaaggtcaaaggca 282
                |||| |||||| |||||||| ||||||||||||||| ||||
Sbjct: 21935647 cggccggccgccgctgttccagacgtacaaggtcaagggca 21935687



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 248      gccgctgctgttccggacgtacaaggtca 276
                ||||||||||| |||||||| ||||||||
Sbjct: 21854684 gccgctgctgtaccggacgttcaaggtca 21854656
to top
>dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0013G11
          Length = 151405

 Score =  105 bits (53), Expect = 1e-19
 Identities = 115/135 (85%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                         
Query: 171   gccaagggcaagcactgggaggccgccgacaaggacgagcggcgggccgccaaggagagc 230
             |||||||| ||||||||||  |||||||| ||||  |||||||| || || |||||| ||
Sbjct: 57511 gccaaggggaagcactgggccgccgccgataagggggagcggcgcgcggcgaaggagtgc 57452

                                                                         
Query: 231   ggcggcgaggacg---gcaggccgctgctgttccggacgtacaaggtcaaaggcaccctc 287
             |||||||||||||   || |||||||||||||| || |||||| |||||| ||| |||||
Sbjct: 57451 ggcggcgaggacggccgccggccgctgctgttcaggtcgtacagggtcaagggctccctc 57392

                            
Query: 288   ctgcacccatacagg 302
             |||||||| ||||||
Sbjct: 57391 ctgcacccgtacagg 57377



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                              
Query: 254   gctgttccggacgtacaaggtcaaaggcaccctcctgcacccatacagg 302
             |||||||||||||||||||||||| |||| | ||||||| || ||||||
Sbjct: 50357 gctgttccggacgtacaaggtcaagggcagcatcctgcatccttacagg 50309



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 247  ggccgctgctgttccggacgtacaaggtcaaaggca 282
            |||||| |||||||||||||||||||||||| ||||
Sbjct: 9124 ggccgccgctgttccggacgtacaaggtcaagggca 9159



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 242   cggcaggccgctgctgttccggacgtacaaggtcaaaggca 282
             |||| |||||| |||||||| ||||||||||||||| ||||
Sbjct: 27691 cggccggccgccgctgttccagacgtacaaggtcaagggca 27731
to top
>ref|XM_478656.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2985

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 65/76 (85%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                       
Query: 230 cggcggcgaggacggcaggc---cgctgctgttccggacgtacaaggtcaaaggcaccct 286
           |||||||||||||||| |||   |||||||||||||||||| || |||||  |||| |||
Sbjct: 367 cggcggcgaggacggccggcggccgctgctgttccggacgttcacggtcaggggcatcct 426

                           
Query: 287 cctgcacccatacagg 302
           ||| ||||| ||||||
Sbjct: 427 cctccacccctacagg 442
to top
>dbj|AK067424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107C16, full
           insert sequence
          Length = 2986

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 65/76 (85%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                       
Query: 230 cggcggcgaggacggcaggc---cgctgctgttccggacgtacaaggtcaaaggcaccct 286
           |||||||||||||||| |||   |||||||||||||||||| || |||||  |||| |||
Sbjct: 367 cggcggcgaggacggccggcggccgctgctgttccggacgttcacggtcaggggcatcct 426

                           
Query: 287 cctgcacccatacagg 302
           ||| ||||| ||||||
Sbjct: 427 cctccacccctacagg 442
to top
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041B22
          Length = 142446

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 65/76 (85%), Gaps = 3/76 (3%)
 Strand = Plus / Minus

                                                                         
Query: 230   cggcggcgaggacggcaggc---cgctgctgttccggacgtacaaggtcaaaggcaccct 286
             |||||||||||||||| |||   |||||||||||||||||| || |||||  |||| |||
Sbjct: 75016 cggcggcgaggacggccggcggccgctgctgttccggacgttcacggtcaggggcatcct 74957

                             
Query: 287   cctgcacccatacagg 302
             ||| ||||| ||||||
Sbjct: 74956 cctccacccctacagg 74941



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                       
Query: 242    cggcaggccgctgctgttccggacgtacaaggtcaaaggca 282
              |||| |||||| |||||||||||||||||||||||| ||||
Sbjct: 112784 cggccggccgccgctgttccggacgtacaaggtcaagggca 112824



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 247    ggccgctgctgttccggacgtacaaggtcaaaggca 282
              |||||| |||||||||||||||||||||||| ||||
Sbjct: 130756 ggccgccgctgttccggacgtacaaggtcaagggca 130791



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 248   gccgctgctgttccggacgtacaaggtca 276
             ||||||||||| |||||||| ||||||||
Sbjct: 68360 gccgctgctgtaccggacgttcaaggtca 68332
to top
>ref|XM_478669.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2694

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 254 gctgttccggacgtacaaggtcaaaggcaccctcctgcacccatacagg 302
           |||||||||||||||||||||||| |||| | ||||||| || ||||||
Sbjct: 246 gctgttccggacgtacaaggtcaagggcagcatcctgcatccttacagg 294
to top
>ref|XM_478664.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2930

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 247 ggccgctgctgttccggacgtacaaggtcaaaggca 282
           |||||| |||||||||||||||||||||||| ||||
Sbjct: 300 ggccgccgctgttccggacgtacaaggtcaagggca 335
to top
>gb|AF432503.1|AF432503 Oryza sativa cellulose synthase-like protein OsCslF2 gene, complete
           cds
          Length = 3468

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 247 ggccgctgctgttccggacgtacaaggtcaaaggca 282
           |||||| |||||||||||||||||||||||| ||||
Sbjct: 495 ggccgccgctgttccggacgtacaaggtcaagggca 530
to top
>dbj|AK100523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100P04, full
           insert sequence
          Length = 2929

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 247 ggccgctgctgttccggacgtacaaggtcaaaggca 282
           |||||| |||||||||||||||||||||||| ||||
Sbjct: 299 ggccgccgctgttccggacgtacaaggtcaagggca 334
to top
>ref|XM_478666.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2583

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 242 cggcaggccgctgctgttccggacgtacaaggtcaaaggca 282
           |||| |||||| |||||||| ||||||||||||||| ||||
Sbjct: 144 cggccggccgccgctgttccagacgtacaaggtcaagggca 184
to top
>gb|AF432502.1|AF432502 Oryza sativa cellulose synthase-like protein OsCslF1 gene, complete
           cds
          Length = 3454

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 242 cggcaggccgctgctgttccggacgtacaaggtcaaaggca 282
           |||| |||||| |||||||| ||||||||||||||| ||||
Sbjct: 497 cggccggccgccgctgttccagacgtacaaggtcaagggca 537
to top
>gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete sequence
          Length = 35427

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 229   gcggcggcgaggacggcaggcc 250
             ||||||||||||||||||||||
Sbjct: 13153 gcggcggcgaggacggcaggcc 13132
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 228     agcggcggcgaggacggcaggc 249
               ||||||||||||||||||||||
Sbjct: 5176254 agcggcggcgaggacggcaggc 5176275
to top
>ref|XM_478655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2655

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 248 gccgctgctgttccggacgtacaaggtca 276
           ||||||||||| |||||||| ||||||||
Sbjct: 183 gccgctgctgtaccggacgttcaaggtca 211
to top
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
             sequence
          Length = 190055

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 227   gagcggcggcgaggacggcag 247
             |||||||||||||||||||||
Sbjct: 42360 gagcggcggcgaggacggcag 42340
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 227      gagcggcggcgaggacggcag 247
                |||||||||||||||||||||
Sbjct: 21349449 gagcggcggcgaggacggcag 21349429
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 227      gagcggcggcgaggacggcag 247
                |||||||||||||||||||||
Sbjct: 21342478 gagcggcggcgaggacggcag 21342458
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 113    cagcctcgccgccccgctgctggcg 137
              ||||||||||||||| |||||||||
Sbjct: 660202 cagcctcgccgcccccctgctggcg 660226
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     gacatcatgtggttttggaa 391
               ||||||||||||||||||||
Sbjct: 2364949 gacatcatgtggttttggaa 2364930
to top
>ref|XM_519354.1| PREDICTED: Pan troglodytes similar to Inosine-5-monophosphate
            dehydrogenase 1 (IMP dehydrogenase 1) (IMPDH-I) (IMPD 1)
            (LOC463701), mRNA
          Length = 1869

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  cagcctcgccgccccgctgc 132
            ||||||||||||||||||||
Sbjct: 1520 cagcctcgccgccccgctgc 1501
to top
>ref|NM_196798.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0039C14.11), mRNA
          Length = 927

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 agcggcggcgaggacggcag 247
           ||||||||||||||||||||
Sbjct: 678 agcggcggcgaggacggcag 659
to top
>gb|AC169700.1| Rhesus Macaque  BAC CH250-20P14 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 195624

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     cttctcctcccttcctgctc 50
              ||||||||||||||||||||
Sbjct: 179544 cttctcctcccttcctgctc 179525
to top
>gb|AC169697.1| Rhesus Macaque  BAC CH250-38L23 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 154876

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     cttctcctcccttcctgctc 50
              ||||||||||||||||||||
Sbjct: 121568 cttctcctcccttcctgctc 121587
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     cgccaaggagagcggcggcg 237
               ||||||||||||||||||||
Sbjct: 1226001 cgccaaggagagcggcggcg 1225982
to top
>gb|BC068608.1| Homo sapiens cDNA clone IMAGE:5296989, with apparent retained
           intron
          Length = 2765

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 tgccagcctcgccgccccgc 129
           ||||||||||||||||||||
Sbjct: 349 tgccagcctcgccgccccgc 368
to top
>gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosome 10, complete sequence
          Length = 210306

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 24     atcctagcttctcctcccttcctg 47
              ||||||||||||||| ||||||||
Sbjct: 107839 atcctagcttctccttccttcctg 107862
to top
>gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, complete sequence
          Length = 163547

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    cagcctcgccgccccgctgc 132
              ||||||||||||||||||||
Sbjct: 139874 cagcctcgccgccccgctgc 139893
to top
>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence
          Length = 249021

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     cttctcctcccttcctgctc 50
              ||||||||||||||||||||
Sbjct: 108160 cttctcctcccttcctgctc 108179
to top
>gb|AC096640.2| Homo sapiens chromosome 1 clone RP11-332J14, complete sequence
          Length = 167346

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tgccagcctcgccgccccgc 129
             ||||||||||||||||||||
Sbjct: 69816 tgccagcctcgccgccccgc 69835
to top
>ref|NM_018650.2| Homo sapiens MAP/microtubule affinity-regulating kinase 1 (MARK1),
           mRNA
          Length = 4638

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 tgccagcctcgccgccccgc 129
           ||||||||||||||||||||
Sbjct: 306 tgccagcctcgccgccccgc 325
to top
>dbj|AK098103.1| Homo sapiens cDNA FLJ40784 fis, clone TRACH2006331, moderately
           similar to Homo sapiens MARK (MARK) mRNA
          Length = 2311

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 tgccagcctcgccgccccgc 129
           ||||||||||||||||||||
Sbjct: 73  tgccagcctcgccgccccgc 92
to top
>gb|AC110015.5| Homo sapiens chromosome 18, clone RP11-104H13, complete sequence
          Length = 168389

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     cttctcctcccttcctgctc 50
              ||||||||||||||||||||
Sbjct: 167693 cttctcctcccttcctgctc 167712
to top
>emb|CR591585.1| full-length cDNA clone CL0BB018ZF07 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1887

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cagcctcgccgccccgctgc 132
           ||||||||||||||||||||
Sbjct: 185 cagcctcgccgccccgctgc 166
to top
>ref|XM_380142.3| PREDICTED: Homo sapiens hypothetical LOC401399 (LOC401399), mRNA
          Length = 2971

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cagcctcgccgccccgctgc 132
           ||||||||||||||||||||
Sbjct: 179 cagcctcgccgccccgctgc 160
to top
>ref|XM_938040.1| PREDICTED: Homo sapiens hypothetical protein LOC648962 (LOC648962),
           mRNA
          Length = 2971

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cagcctcgccgccccgctgc 132
           ||||||||||||||||||||
Sbjct: 179 cagcctcgccgccccgctgc 160
to top
>ref|XM_379517.3| PREDICTED: Homo sapiens hypothetical LOC401399 (LOC401399), mRNA
          Length = 2971

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cagcctcgccgccccgctgc 132
           ||||||||||||||||||||
Sbjct: 179 cagcctcgccgccccgctgc 160
to top
>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence
          Length = 165090

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   cagcctcgccgccccgctgc 132
             ||||||||||||||||||||
Sbjct: 31246 cagcctcgccgccccgctgc 31265
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 118     tcgccgccccgctgctggcg 137
               ||||||||||||||||||||
Sbjct: 2406849 tcgccgccccgctgctggcg 2406868
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      agcggcggcgaggacggcag 247
                ||||||||||||||||||||
Sbjct: 16051985 agcggcggcgaggacggcag 16051966
to top
>gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0039C14,
             complete sequence
          Length = 135098

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   agcggcggcgaggacggcag 247
             ||||||||||||||||||||
Sbjct: 67090 agcggcggcgaggacggcag 67071
to top
>gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromosome 7, complete
             sequence
          Length = 172449

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   cagcctcgccgccccgctgc 132
             ||||||||||||||||||||
Sbjct: 70398 cagcctcgccgccccgctgc 70379
to top
>gb|AC084603.1|CBRG43L07 Caenorhabditis briggsae cosmid G43L07, complete sequence
          Length = 32752

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    gcttctcctcccttcctgct 49
             ||||||||||||||||||||
Sbjct: 20212 gcttctcctcccttcctgct 20231
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tcgccgccccgctgctggcg 137
              ||||||||||||||||||||
Sbjct: 134326 tcgccgccccgctgctggcg 134345
to top
>ref|XM_309214.2| Anopheles gambiae str. PEST ENSANGP00000016011 (ENSANGG00000013522),
            partial mRNA
          Length = 3120

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 234  ggcgaggacggcaggccgctgctg 257
            ||||||||||||| ||||||||||
Sbjct: 2608 ggcgaggacggcaagccgctgctg 2631
to top
>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
             sequence
          Length = 173896

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    cttctcctcccttcctgctc 50
             ||||||||||||||||||||
Sbjct: 34151 cttctcctcccttcctgctc 34170
to top
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 212   gcgggccgccaaggagagcggcggcgaggacg 243
             |||||||  |||||||| ||||||||||||||
Sbjct: 14856 gcgggccaacaaggagaccggcggcgaggacg 14887
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      agcggcggcgaggacggcag 247
                ||||||||||||||||||||
Sbjct: 16060226 agcggcggcgaggacggcag 16060207
to top
>gb|AC163645.5| Mus musculus BAC clone RP23-206F16 from chromosome 10, complete sequence
          Length = 212773

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 24     atcctagcttctcctcccttcctg 47
              ||||||||||||||| ||||||||
Sbjct: 210038 atcctagcttctccttccttcctg 210061
to top
>gb|AC132471.4| Mus musculus BAC clone RP23-106E17 from 10, complete sequence
          Length = 197822

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    catcctagcttctcctcccttcct 46
             ||||||| ||||||||||||||||
Sbjct: 79797 catcctaccttctcctcccttcct 79774
to top
>dbj|AB040910.1| Homo sapiens mRNA for KIAA1477 protein, partial cds
          Length = 4638

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 tgccagcctcgccgccccgc 129
           ||||||||||||||||||||
Sbjct: 306 tgccagcctcgccgccccgc 325


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,208,911
Number of Sequences: 3902068
Number of extensions: 3208911
Number of successful extensions: 82029
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81136
Number of HSP's gapped (non-prelim): 884
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top