Clone Name | bastl44g03 |
---|---|
Clone Library Name | barley_pub |
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 46.1 bits (23), Expect = 0.096 Identities = 47/55 (85%) Strand = Plus / Plus Query: 24 ccctagagctgccgcctcgccgtagcttagcgtcaccgccgacgcctcaaccccc 78 |||||||||||||||| ||| |||||| ||| || ||| |||||||| |||||| Sbjct: 38308 ccctagagctgccgccgcgcggtagctccgcgccatcgctgacgcctcgaccccc 38362
>gb|AC150004.3| Mus musculus chromosome 7, clone RP24-368P9, complete sequence Length = 176113 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 aagaaatggaagagatggagaa 235 |||||||||||||||||||||| Sbjct: 160894 aagaaatggaagagatggagaa 160915
>gb|DQ248961.1| Streptomyces davawensis putative RNA polymerase ECF-subfamily sigma factor, putative chitinase precursor, putative riboflavin synthase, putative integral membrane protein, putative dihydroxybutanonphosphate synthase/GTP-cyclohydrolase II, putative 6,7-dimethyl-8-ribityllumazine synthase, and putative phosphoribosyl-ATP-pyrophosphatase genes, complete cds Length = 7320 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 110 gctcgcgggcgccgccgccatcgccg 135 ||||||||||||||| |||||||||| Sbjct: 3307 gctcgcgggcgccgcggccatcgccg 3282
>gb|AC102628.5| Mus musculus chromosome 7, clone RP23-467K15, complete sequence Length = 178563 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 aagaaatggaagagatggagaa 235 |||||||||||||||||||||| Sbjct: 80161 aagaaatggaagagatggagaa 80182
>gb|AC167544.9| Mus musculus chromosome 7, clone RP24-255K20, complete sequence Length = 155048 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 aagaaatggaagagatggagaa 235 |||||||||||||||||||||| Sbjct: 35077 aagaaatggaagagatggagaa 35098
>gb|AC167161.10| Mus musculus chromosome 7, clone RP23-367H8, complete sequence Length = 193612 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 aagaaatggaagagatggagaa 235 |||||||||||||||||||||| Sbjct: 22131 aagaaatggaagagatggagaa 22110
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gcgccgccgccatcgccgttc 138 ||||||||||||||||||||| Sbjct: 1261555 gcgccgccgccatcgccgttc 1261535
>gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, complete sequence Length = 278715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 agaaatggaagagatggagaa 235 ||||||||||||||||||||| Sbjct: 167471 agaaatggaagagatggagaa 167491
>gb|AC144671.3| Mus musculus BAC clone RP24-292O2 from chromosome 9, complete sequence Length = 153253 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 gacaattcctctgctgttgtt 293 ||||||||||||||||||||| Sbjct: 52799 gacaattcctctgctgttgtt 52779
>gb|AC159246.2| Mus musculus BAC clone RP24-266N21 from chromosome 9, complete sequence Length = 147269 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 gacaattcctctgctgttgtt 293 ||||||||||||||||||||| Sbjct: 5758 gacaattcctctgctgttgtt 5778
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 112 tcgcgggcgccgccgccatcgccgt 136 ||||||||||||||||| ||||||| Sbjct: 5699951 tcgcgggcgccgccgccttcgccgt 5699927
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ctctgaggttgtatcaaaga 217 |||||||||||||||||||| Sbjct: 1188584 ctctgaggttgtatcaaaga 1188603
>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence Length = 189323 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aagaaatggaagagatggag 233 |||||||||||||||||||| Sbjct: 72054 aagaaatggaagagatggag 72073
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 348 cggtcgtgcatccatgaggtcgctgtccccaacggctacg 387 |||||||||||||| ||||| || || ||||| ||||||| Sbjct: 156355 cggtcgtgcatccacgaggtggcggtgcccaagggctacg 156316
>ref|XM_360487.1| Magnaporthe grisea 70-15 hypothetical protein (MG10799.4) partial mRNA Length = 1584 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 acgagcaggagccgctgcct 317 |||||||||||||||||||| Sbjct: 1094 acgagcaggagccgctgcct 1113
>ref|XM_960151.1| Neurospora crassa OR74A hypothetical protein (NCU08341.1) partial mRNA Length = 3546 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cgccgccgccatcgccgttc 138 |||||||||||||||||||| Sbjct: 2790 cgccgccgccatcgccgttc 2809
>ref|XM_329386.1| Neurospora crassa OR74A hypothetical protein (NCU08341.1) partial mRNA Length = 3546 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cgccgccgccatcgccgttc 138 |||||||||||||||||||| Sbjct: 2790 cgccgccgccatcgccgttc 2809
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tcgcgggcgccgccgccatcgccg 135 |||||||||||||||||| ||||| Sbjct: 18377327 tcgcgggcgccgccgccaccgccg 18377304
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tcgcgggcgccgccgccatcgccg 135 |||||||||||||||||| ||||| Sbjct: 143758 tcgcgggcgccgccgccaccgccg 143735
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tcgcgggcgccgccgccatcgccg 135 |||||| ||||||||||||||||| Sbjct: 3941545 tcgcggccgccgccgccatcgccg 3941522
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cgggcgccgccgccatcgcc 134 |||||||||||||||||||| Sbjct: 174153 cgggcgccgccgccatcgcc 174172
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ctcgctcgcgggcgccgccg 126 |||||||||||||||||||| Sbjct: 5277744 ctcgctcgcgggcgccgccg 5277725
>gb|AC093908.3| Homo sapiens BAC clone RP11-752L20 from 4, complete sequence Length = 164920 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 aggacaattcctctgctgtt 290 |||||||||||||||||||| Sbjct: 7219 aggacaattcctctgctgtt 7238
>gb|AC008870.8| Homo sapiens chromosome 16 clone CTD-2196E14, complete sequence Length = 150522 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cctcctcctccgctgtaccc 26 |||||||||||||||||||| Sbjct: 28282 cctcctcctccgctgtaccc 28301
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 348 cggtcgtgcatccatgaggtcgctgtccccaacggctacg 387 |||||||||||||| ||||| || || ||||| ||||||| Sbjct: 3788683 cggtcgtgcatccacgaggtggcggtgcccaagggctacg 3788644
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cgccgccgccatcgccgttc 138 |||||||||||||||||||| Sbjct: 21646538 cgccgccgccatcgccgttc 21646519
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tcgcgggcgccgccgccatcgccg 135 |||||||||||||||||| ||||| Sbjct: 18371368 tcgcgggcgccgccgccaccgccg 18371345
>gb|AC012317.7| Homo sapiens chromosome 16 clone CTD-2385L22, complete sequence Length = 133289 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cctcctcctccgctgtaccc 26 |||||||||||||||||||| Sbjct: 76880 cctcctcctccgctgtaccc 76899
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ctcgctcgcgggcgccgccg 126 |||||||||||||||||||| Sbjct: 7392859 ctcgctcgcgggcgccgccg 7392878
>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C12 Length = 136799 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cgccgccgccatcgccgttc 138 |||||||||||||||||||| Sbjct: 14108 cgccgccgccatcgccgttc 14089
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cgccgccgccatcgccgttc 138 |||||||||||||||||||| Sbjct: 106712 cgccgccgccatcgccgttc 106693
>dbj|AK121851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101M14, full insert sequence Length = 3448 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 348 cggtcgtgcatccatgaggtcgctgtccccaacggctacg 387 |||||||||||||| ||||| || || ||||| ||||||| Sbjct: 306 cggtcgtgcatccacgaggtggcggtgcccaagggctacg 345
>dbj|AK122056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114L01, full insert sequence Length = 3438 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 348 cggtcgtgcatccatgaggtcgctgtccccaacggctacg 387 |||||||||||||| ||||| || || ||||| ||||||| Sbjct: 296 cggtcgtgcatccacgaggtggcggtgcccaagggctacg 335
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 cgcgggcgccgccgccatcgccgt 136 |||||||||| ||||||||||||| Sbjct: 1432302 cgcgggcgccaccgccatcgccgt 1432325
>emb|AL133523.5|CNS01DVB Human chromosome 14 DNA sequence BAC R-775G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173039 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cctgagctgagctcggagga 274 |||||||||||||||||||| Sbjct: 53387 cctgagctgagctcggagga 53406
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cgctcgcgggcgccgccgcc 128 |||||||||||||||||||| Sbjct: 3590164 cgctcgcgggcgccgccgcc 3590183
>gb|BC111619.1| Bos taurus cDNA clone IMAGE:8025885, partial cds Length = 462 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gagcaggagccgctgcctgg 319 |||||||||||||||||||| Sbjct: 71 gagcaggagccgctgcctgg 52
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 348 cggtcgtgcatccatgaggtcgctgtccccaacggctacg 387 |||||||||||||| ||||| || || ||||| ||||||| Sbjct: 3797377 cggtcgtgcatccacgaggtggcggtgcccaagggctacg 3797338
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cgctcgcgggcgccgccgcc 128 |||||||||||||||||||| Sbjct: 2319165 cgctcgcgggcgccgccgcc 2319184
>emb|AL683822.8| Mouse DNA sequence from clone RP23-94I24 on chromosome X, complete sequence Length = 184898 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ggttgtatcaaagaaatgga 223 |||||||||||||||||||| Sbjct: 62788 ggttgtatcaaagaaatgga 62807
>emb|AL929408.3| Mouse DNA sequence from clone RP23-456B2 on chromosome 4, complete sequence Length = 196915 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 aaatggaagagatggagaat 236 |||||||||||||||||||| Sbjct: 98240 aaatggaagagatggagaat 98221 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,841,042 Number of Sequences: 3902068 Number of extensions: 3841042 Number of successful extensions: 87564 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86808 Number of HSP's gapped (non-prelim): 756 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)