ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44g02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane proton-translocating inorganic pyrophosphatase, complete cds Length = 2649 Score = 123 bits (62), Expect = 1e-25 Identities = 65/66 (98%) Strand = Plus / Plus Query: 77 cgtcggcctgccagcctgacagccatggcgatcctcggggagctcgggacggagatcctc 136 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgtcggcctgccagccagacagccatggcgatcctcggggagctcgggacggagatcctc 60 Query: 137 atcccc 142 |||||| Sbjct: 61 atcccc 66
>gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrophosphatase mRNA, complete cds Length = 2671 Score = 79.8 bits (40), Expect = 2e-12 Identities = 43/44 (97%) Strand = Plus / Plus Query: 99 ccatggcgatcctcggggagctcgggacggagatcctcatcccc 142 |||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 29 ccatggcgatcctcggggagctcgggaccgagatcctcatcccc 72
>gb|AY860110.1| Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence Length = 11188 Score = 44.1 bits (22), Expect = 0.11 Identities = 25/26 (96%) Strand = Plus / Minus Query: 37 cccaccccgcccgccgccgtccggtc 62 ||||||||| |||||||||||||||| Sbjct: 2374 cccaccccggccgccgccgtccggtc 2349
>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12 Contains three novel genes, the 3' end of the LHX2 gene for LIM homeobox protein 2 and four CpG islands, complete sequence Length = 221887 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cccaccccgcccgccgccgtcc 58 |||||||||||||||||||||| Sbjct: 18119 cccaccccgcccgccgccgtcc 18098
>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence Length = 177555 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 cccaccccgcccgccgccgtcc 58 |||||||||||||||||||||| Sbjct: 33152 cccaccccgcccgccgccgtcc 33173
>gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, complete sequence Length = 187855 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gccagcctgacagccatggcg 106 ||||||||||||||||||||| Sbjct: 10456 gccagcctgacagccatggcg 10436
>gb|AC102465.11| Mus musculus chromosome 3, clone RP24-333O23, complete sequence Length = 138893 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gccagcctgacagccatggcg 106 ||||||||||||||||||||| Sbjct: 25309 gccagcctgacagccatggcg 25289
>gb|AC115041.15| Mus musculus chromosome 3, clone RP24-285A14, complete sequence Length = 149484 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gccagcctgacagccatggcg 106 ||||||||||||||||||||| Sbjct: 110603 gccagcctgacagccatggcg 110583
>gb|AY022083.1| Oryza sativa microsatellite MRG4408 containing (TC)X15, genomic sequence Length = 230 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcccaccccgcccgccgccg 55 |||||||||||||||||||| Sbjct: 227 tcccaccccgcccgccgccg 208
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tcccaccccgcccgccgccg 55 |||||||||||||||||||| Sbjct: 14658 tcccaccccgcccgccgccg 14677
>emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6 Length = 43307 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gatcctcggggagctcggga 125 |||||||||||||||||||| Sbjct: 21137 gatcctcggggagctcggga 21156
>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence Length = 154505 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcccaccccgcccgccgccg 55 |||||||||||||||||||| Sbjct: 10942 tcccaccccgcccgccgccg 10923
>gb|AC153857.7| Mus musculus 6 BAC RP23-158G17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215780 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cccccctcatcccaccccgc 46 |||||||||||||||||||| Sbjct: 101292 cccccctcatcccaccccgc 101311
>ref|NM_001019330.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6F6.07c), partial mRNA Length = 456 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gatcctcggggagctcggga 125 |||||||||||||||||||| Sbjct: 262 gatcctcggggagctcggga 243
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcccaccccgcccgccgccg 55 |||||||||||||||||||| Sbjct: 12489517 tcccaccccgcccgccgccg 12489498
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ggtttcgtcggcctgccagc 91 |||||||||||||||||||| Sbjct: 2831217 ggtttcgtcggcctgccagc 2831198
>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence Length = 178222 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 gcctgccagcctgacagccatggc 105 ||||||||||||| |||||||||| Sbjct: 45785 gcctgccagcctgccagccatggc 45762
>emb|X67030.1|SPRPS13G S.pombe rps13 gene for ribosomal protein S13 Length = 983 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gatcctcggggagctcggga 125 |||||||||||||||||||| Sbjct: 552 gatcctcggggagctcggga 533
>emb|AL928581.8| Mouse DNA sequence from clone RP23-318H20 on chromosome 2, complete sequence Length = 178735 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cccccctcatcccaccccgcccgc 50 |||||| ||||||||||||||||| Sbjct: 81012 ccccccccatcccaccccgcccgc 80989
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcccaccccgcccgccgccg 55 |||||||||||||||||||| Sbjct: 12496857 tcccaccccgcccgccgccg 12496838
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 catggcgatcctcggggagctcg 122 ||||||||||||||| ||||||| Sbjct: 2174932 catggcgatcctcggcgagctcg 2174954
>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0115F21, complete sequence Length = 128493 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atcccaccccgcccgccgc 53 ||||||||||||||||||| Sbjct: 85397 atcccaccccgcccgccgc 85415
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 cccaccccgcccgccgccg 55 ||||||||||||||||||| Sbjct: 2318393 cccaccccgcccgccgccg 2318411 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 ccccgcccgccgccgtccg 59 ||||||||||||||||||| Sbjct: 323518 ccccgcccgccgccgtccg 323500
>gb|AF077531.1| Caenorhabditis elegans cosmid F13C5, complete sequence Length = 38906 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 cacagagagcgagagaccc 20 ||||||||||||||||||| Sbjct: 10923 cacagagagcgagagaccc 10941
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 37 cccaccccgcccgccgccgtccg 59 |||||| |||||||||||||||| Sbjct: 261668 cccaccacgcccgccgccgtccg 261646
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cccaccccgcccgccgccg 55 ||||||||||||||||||| Sbjct: 1185464 cccaccccgcccgccgccg 1185446 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 ccccgcccgccgccgtccg 59 ||||||||||||||||||| Sbjct: 1054539 ccccgcccgccgccgtccg 1054521
>ref|XM_387224.1| Gibberella zeae PH-1 chromosome 4 RS13_XENLA 40S RIBOSOMAL PROTEIN S13 (FG07048.1) partial mRNA Length = 456 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 gatcctcggggagctcggg 124 ||||||||||||||||||| Sbjct: 262 gatcctcggggagctcggg 244
>gb|AC129020.4| Mus musculus BAC clone RP23-234A5 from chromosome 16, complete sequence Length = 192668 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 82 gcctgccagcctgacagccatgg 104 ||||||||||||| ||||||||| Sbjct: 49891 gcctgccagcctgccagccatgg 49913
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 100 catggcgatcctcggggagctcg 122 ||||||||||||||| ||||||| Sbjct: 4245255 catggcgatcctcggcgagctcg 4245233
>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence Length = 197295 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 tccgtcccccctcatcccacccc 44 ||||||||||||| ||||||||| Sbjct: 165577 tccgtcccccctcctcccacccc 165599
>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence Length = 249021 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 tcccccctcatcccacccc 44 ||||||||||||||||||| Sbjct: 120715 tcccccctcatcccacccc 120697
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 catggcgatcctcggggagctcg 122 ||||||||||||||| ||||||| Sbjct: 226701 catggcgatcctcggcgagctcg 226723
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cccaccccgcccgccgccg 55 ||||||||||||||||||| Sbjct: 1066948 cccaccccgcccgccgccg 1066930 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 ccccgcccgccgccgtccg 59 ||||||||||||||||||| Sbjct: 935539 ccccgcccgccgccgtccg 935521
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 ccccgcccgccgccgtccg 59 ||||||||||||||||||| Sbjct: 211783 ccccgcccgccgccgtccg 211765
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 accccgcccgccgccgtcc 58 ||||||||||||||||||| Sbjct: 171232 accccgcccgccgccgtcc 171250
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 ccccgcccgccgccgtccg 59 ||||||||||||||||||| Sbjct: 164098 ccccgcccgccgccgtccg 164116
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 ccccgcccgccgccgtccg 59 ||||||||||||||||||| Sbjct: 13976 ccccgcccgccgccgtccg 13958
>dbj|AB226110.1| Aspergillus oryzae cDNA, contig sequence: AoEST2967 Length = 1313 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 gatcctcggggagctcggg 124 ||||||||||||||||||| Sbjct: 628 gatcctcggggagctcggg 610
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 catggcgatcctcggggagctcg 122 |||| |||||||||||||||||| Sbjct: 1786427 catgtcgatcctcggggagctcg 1786449
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 gatcctcggggagctcggg 124 ||||||||||||||||||| Sbjct: 698760 gatcctcggggagctcggg 698742
>gb|AC098865.2| Homo sapiens BAC clone RP11-374O3 from 4, complete sequence Length = 54348 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 tcccccctcatcccacccc 44 ||||||||||||||||||| Sbjct: 52877 tcccccctcatcccacccc 52859
>gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complete sequence Length = 148673 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 tcccccctcatcccacccc 44 ||||||||||||||||||| Sbjct: 529 tcccccctcatcccacccc 511
>gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence Length = 209211 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 tccgtcccccctcatcccacccc 44 |||||||||||||| |||||||| Sbjct: 10596 tccgtcccccctcaccccacccc 10618
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 100 catggcgatcctcggggagctcg 122 ||||||||||||||| ||||||| Sbjct: 4639445 catggcgatcctcggcgagctcg 4639423
>dbj|AK075611.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:0710008A09 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, full insert sequence Length = 2476 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 25 gtcccccctcatcccaccccgcc 47 ||||||||||| ||||||||||| Sbjct: 1120 gtcccccctcaccccaccccgcc 1142
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atcccaccccgcccgccgc 53 ||||||||||||||||||| Sbjct: 6522735 atcccaccccgcccgccgc 6522753
>gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosome 16, complete sequence Length = 197884 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 tcccccctcatcccacccc 44 ||||||||||||||||||| Sbjct: 63385 tcccccctcatcccacccc 63367
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 accccgcccgccgccgtcc 58 ||||||||||||||||||| Sbjct: 4053628 accccgcccgccgccgtcc 4053610
>gb|AC009298.3| Homo sapiens BAC clone RP11-17I6 from 2, complete sequence Length = 165242 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 tcccaccccgcccgccgcc 54 ||||||||||||||||||| Sbjct: 103618 tcccaccccgcccgccgcc 103600
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cccaccccgcccgccgccg 55 ||||||||||||||||||| Sbjct: 5806820 cccaccccgcccgccgccg 5806802 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 44 cgcccgccgccgtccggtccgtc 66 ||||||| ||||||||||||||| Sbjct: 2100551 cgcccgctgccgtccggtccgtc 2100529
>emb|AJ340490.1|HSA340490 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WH19R Length = 702 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 ccccgcccgccgccgtccg 59 ||||||||||||||||||| Sbjct: 326 ccccgcccgccgccgtccg 344
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 ccgccgccgtccggtccgt 65 ||||||||||||||||||| Sbjct: 1713058 ccgccgccgtccggtccgt 1713040
>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete sequence Length = 173896 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 tcccccctcatcccacccc 44 ||||||||||||||||||| Sbjct: 46723 tcccccctcatcccacccc 46705
>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete sequence Length = 187735 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 tcccccctcatcccacccc 44 ||||||||||||||||||| Sbjct: 86202 tcccccctcatcccacccc 86220 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 838,880 Number of Sequences: 3902068 Number of extensions: 838880 Number of successful extensions: 76271 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74631 Number of HSP's gapped (non-prelim): 1640 length of query: 142 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 121 effective length of database: 17,151,101,840 effective search space: 2075283322640 effective search space used: 2075283322640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
