ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44g01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR354584.8| Zebrafish DNA sequence from clone DKEY-7B6 in linkage group 12, complete sequence Length = 218091 Score = 42.1 bits (21), Expect = 0.14 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 acccccaacccccaacctgga 47 ||||||||||||||||||||| Sbjct: 1212 acccccaacccccaacctgga 1192
>emb|BX511171.13| Zebrafish DNA sequence from clone DKEY-264K15 in linkage group 4 Contains the ascl1a gene for achaete-scute complex-like 1a (Drosophila), the gene for a novel protein similar to vertebrate RecQ protein-like DNA helicase Q1-like (RECQL), the gene for a novel protein similar to tyrosine hydroxylase (th), the pah gene for phenylalanine hydroxylase, the 5' end of the gene for a novel protein similar to vertebrate uncharacterized hematopoietic stem/progenitor cells protein MDS028 (MDS028) and a CpG island, complete sequence Length = 166242 Score = 42.1 bits (21), Expect = 0.14 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacctgga 47 ||||||||||||||||||||| Sbjct: 63738 acccccaacccccaacctgga 63758
>emb|AL929584.22| Zebrafish DNA sequence from clone CH211-147H21 in linkage group 23, complete sequence Length = 159923 Score = 42.1 bits (21), Expect = 0.14 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 ttacccccaacccccaacctg 45 ||||||||||||||||||||| Sbjct: 112858 ttacccccaacccccaacctg 112878
>emb|CR848742.8| Zebrafish DNA sequence from clone DKEY-181C1 in linkage group 16, complete sequence Length = 177769 Score = 42.1 bits (21), Expect = 0.14 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 acccccaacccccaacctgga 47 ||||||||||||||||||||| Sbjct: 85778 acccccaacccccaacctgga 85758
>ref|XM_585817.2| PREDICTED: Bos taurus similar to PHD finger protein 1 (PHF1 protein) (LOC508957), mRNA Length = 2259 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ccccaacccccaacctggat 48 |||||||||||||||||||| Sbjct: 2064 ccccaacccccaacctggat 2045
>emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chromosome 1p31.3-32.3 Contains gene FLJ20331, two novel genes, the SFRS11 gene for arginine/serine-rich 11 splicing factor and the 3' end of gene DKFZP566D1346, complete sequence Length = 131612 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 attacccccaacccccaacc 43 |||||||||||||||||||| Sbjct: 85830 attacccccaacccccaacc 85849
>gb|AC068727.8| Homo sapiens chromosome 15 clone RP11-90M11 map 15q15, complete sequence Length = 175808 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 acccccaacccccaacctgg 46 |||||||||||||||||||| Sbjct: 136658 acccccaacccccaacctgg 136639
>dbj|AK021742.1| Homo sapiens cDNA FLJ11680 fis, clone HEMBA1004820 Length = 1992 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 attacccccaacccccaacc 43 |||||||||||||||||||| Sbjct: 467 attacccccaacccccaacc 486
>gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3p, complete sequence Length = 198444 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 acccccaacccccaacctgg 46 |||||||||||||||||||| Sbjct: 193656 acccccaacccccaacctgg 193637
>gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168551 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 caacccccaacctggatccc 51 |||||||||||||||||||| Sbjct: 89342 caacccccaacctggatccc 89361
>emb|AL139020.5|CNS01DX2 Human chromosome 14 DNA sequence BAC R-164H13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166308 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacctg 45 |||||||||||||||||||| Sbjct: 101188 tacccccaacccccaacctg 101169
>gb|AC018839.5| Homo sapiens chromosome 3 clone RP11-593J10 map 3p, complete sequence Length = 182288 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacctgg 46 |||||||||||||||||||| Sbjct: 90842 acccccaacccccaacctgg 90861
>gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3p, complete sequence Length = 198459 Score = 40.1 bits (20), Expect = 0.55 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 acccccaacccccaacctgg 46 |||||||||||||||||||| Sbjct: 193665 acccccaacccccaacctgg 193646
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aaaatttcttcacctggaagcaa 24 |||||||||||||||| |||||| Sbjct: 1310683 aaaatttcttcacctgcaagcaa 1310661
>gb|AC146613.3| Mus musculus BAC clone RP23-36P1 from chromosome 18, complete sequence Length = 197939 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 gcaattacccccaaccccc 39 ||||||||||||||||||| Sbjct: 92183 gcaattacccccaaccccc 92165
>emb|CR352300.8| Zebrafish DNA sequence from clone DKEY-65L5 in linkage group 12, complete sequence Length = 76062 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 ccccaacccccaacctgga 47 ||||||||||||||||||| Sbjct: 17747 ccccaacccccaacctgga 17729
>gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete sequence Length = 166126 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacct 44 ||||||||||||||||||| Sbjct: 63541 tacccccaacccccaacct 63559
>emb|AL589665.4| Human DNA sequence from clone RP11-123D12 on chromosome 1 Contains a neural precursor cell expressed developmentally down-regulated 5 (NEDD5) pseudogene, complete sequence Length = 132623 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 caattacccccaaccccca 40 ||||||||||||||||||| Sbjct: 34859 caattacccccaaccccca 34841
>emb|CR352324.11| Zebrafish DNA sequence from clone CH211-218L14 in linkage group 12, complete sequence Length = 206894 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 ccccaacccccaacctgga 47 ||||||||||||||||||| Sbjct: 196008 ccccaacccccaacctgga 196026
>dbj|AK093805.1| Homo sapiens cDNA FLJ36486 fis, clone THYMU2017831 Length = 2851 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 tttcttcacctggaagcaa 24 ||||||||||||||||||| Sbjct: 1291 tttcttcacctggaagcaa 1273
>gb|AF370021.1| Plethodon vandykei DBW5779 NADH dehydrogenase subunit 4 gene, partial cds; tRNA-His gene, complete sequence; and tRNA-Ser gene, partial sequence; mitochondrial genes for mitochondrial products Length = 756 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacct 44 ||||||||||||||||||| Sbjct: 391 tacccccaacccccaacct 409
>dbj|AK171733.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830007N10 product:cadherin 17, full insert sequence Length = 3353 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 ttacccccaacccccaacc 43 ||||||||||||||||||| Sbjct: 3066 ttacccccaacccccaacc 3048
>dbj|AK037259.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130001G20 product:unclassifiable, full insert sequence Length = 2086 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 ttacccccaacccccaacc 43 ||||||||||||||||||| Sbjct: 1374 ttacccccaacccccaacc 1392
>gb|AF329354.1|AF329354 Plethodon vandykei isolate Pvan2 NADH dehydrogenase subunit 4 gene, partial cds; tRNA-His gene, complete sequence; and tRNA-Ser gene, partial sequence; mitochondrial genes for mitochondrial products Length = 768 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacct 44 ||||||||||||||||||| Sbjct: 392 tacccccaacccccaacct 410
>gb|AC010985.8| Homo sapiens BAC clone RP11-521O14 from 2, complete sequence Length = 196020 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 cccccaacccccaacctgg 46 ||||||||||||||||||| Sbjct: 62962 cccccaacccccaacctgg 62944
>gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 69230 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacctg 45 ||||||||||||||||||| Sbjct: 55703 acccccaacccccaacctg 55721
>gb|AF285135.1|AF285135 Campylobacter jejuni strain X7199 major outer membrane protein (cmp) gene, partial cds Length = 1215 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aaaatttcttcacctggaagcaa 24 |||||||||||||||| |||||| Sbjct: 965 aaaatttcttcacctgcaagcaa 943
>gb|AF285129.1|AF285129 Campylobacter jejuni strain S2b major outer membrane protein (cmp) gene, complete cds Length = 1296 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aaaatttcttcacctggaagcaa 24 |||||||||||||||| |||||| Sbjct: 1001 aaaatttcttcacctgcaagcaa 979
>gb|DQ341259.1| Campylobacter jejuni strain T123 major outer membrane protein (porA) gene, complete cds Length = 1296 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aaaatttcttcacctggaagcaa 24 |||||||||||||||| |||||| Sbjct: 1001 aaaatttcttcacctgcaagcaa 979
>gb|DQ341245.1| Campylobacter jejuni strain NC13265 major outer membrane protein (porA) gene, complete cds Length = 1296 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aaaatttcttcacctggaagcaa 24 |||||||||||||||| |||||| Sbjct: 1001 aaaatttcttcacctgcaagcaa 979
>gb|DQ341239.1| Campylobacter jejuni strain NC13259 major outer membrane protein (porA) gene, complete cds Length = 1296 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aaaatttcttcacctggaagcaa 24 |||||||||||||||| |||||| Sbjct: 1001 aaaatttcttcacctgcaagcaa 979
>emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in linkage group 13, complete sequence Length = 47008 Score = 38.2 bits (19), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 25 ttacccccaacccccaacctgga 47 |||||||||||| |||||||||| Sbjct: 21747 ttacccccaacctccaacctgga 21769
>gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, complete sequence Length = 198440 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gcaattacccccaaccccc 39 ||||||||||||||||||| Sbjct: 196981 gcaattacccccaaccccc 196999
>emb|AL805910.7| Mouse DNA sequence from clone RP23-144K17 on chromosome 4, complete sequence Length = 200933 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacctg 45 ||||||||||||||||||| Sbjct: 171730 acccccaacccccaacctg 171748 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 171715 tacccccaacccccaacc 171732
>emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on chromosome 2, complete sequence Length = 211034 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 ttacccccaacccccaacc 43 ||||||||||||||||||| Sbjct: 69006 ttacccccaacccccaacc 69024
>gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, complete sequence Length = 185857 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 cccccaacccccaacctg 45 |||||||||||||||||| Sbjct: 47308 cccccaacccccaacctg 47291
>gb|AC163264.3| Rhinolophus ferrumequinum clone VMRC7-385N19, complete sequence Length = 135924 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 41959 tacccccaacccccaacc 41942
>gb|AC119884.13| Mus musculus chromosome 15, clone RP24-213O5, complete sequence Length = 168400 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 cccccaacccccaacctg 45 |||||||||||||||||| Sbjct: 21249 cccccaacccccaacctg 21232
>gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, complete sequence Length = 173479 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 cccccaacccccaacctg 45 |||||||||||||||||| Sbjct: 4747 cccccaacccccaacctg 4730
>gb|AF432583.1| Zea mays subsp. mexicana clone Zx1010 transposon mariner-like transposase pseudogene, partial sequence Length = 461 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 ttcttcacctggaagcaa 24 |||||||||||||||||| Sbjct: 66 ttcttcacctggaagcaa 49
>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence Length = 209820 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 cccccaacccccaacctg 45 |||||||||||||||||| Sbjct: 155592 cccccaacccccaacctg 155575
>gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, complete sequence Length = 249767 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 109225 tacccccaacccccaacc 109242
>gb|AC093360.7| Mus musculus chromosome 3, clone RP23-57F18, complete sequence Length = 275076 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 ttcacctggaagcaatta 27 |||||||||||||||||| Sbjct: 28057 ttcacctggaagcaatta 28040
>gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, complete sequence Length = 167945 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 31913 tacccccaacccccaacc 31930
>gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, complete sequence Length = 191971 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 92421 tacccccaacccccaacc 92404
>ref|XM_381057.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00881.1) partial mRNA Length = 5526 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 tttcttcacctggaagca 23 |||||||||||||||||| Sbjct: 347 tttcttcacctggaagca 364
>gb|AC126258.4| Mus musculus BAC clone RP23-325B8 from chromosome 14, complete sequence Length = 203304 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 attacccccaacccccaa 41 |||||||||||||||||| Sbjct: 60371 attacccccaacccccaa 60354
>gb|AC164401.4| Mus musculus chromosome 3, clone RP23-447D6, complete sequence Length = 214398 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 ttcacctggaagcaatta 27 |||||||||||||||||| Sbjct: 130112 ttcacctggaagcaatta 130129
>gb|AC142285.1| Pan troglodytes BAC clone RP43-169B4 from 7, complete sequence Length = 170237 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 112336 tacccccaacccccaacc 112319
>emb|BX928753.10| Zebrafish DNA sequence from clone DKEY-5J3 in linkage group 17, complete sequence Length = 159225 Score = 36.2 bits (18), Expect = 8.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 22 caattacccccaacccccaacc 43 |||||| ||||||||||||||| Sbjct: 59728 caattagccccaacccccaacc 59749
>emb|AL583830.7| Human DNA sequence from clone RP11-172L10 on chromosome 1 Contains the 5' end of a variant of the KCNK2 gene for potassium channel subfamily K member 2 and a translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene, complete sequence Length = 151469 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aaatttcttcacctggaa 20 |||||||||||||||||| Sbjct: 29763 aaatttcttcacctggaa 29780
>emb|AL356586.13| Human DNA sequence from clone RP11-413D16 on chromosome 6q32-33.2, complete sequence Length = 34727 Score = 36.2 bits (18), Expect = 8.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 23 aattacccccaacccccaacct 44 |||||||||| ||||||||||| Sbjct: 21201 aattaccccccacccccaacct 21222
>emb|AL354855.26| Human DNA sequence from clone RP11-643E14 on chromosome 9 Contains a novel gene (MGC12921), the 5' end of a novel gene (KIAA0515) and three CpG islands, complete sequence Length = 112849 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 79382 tacccccaacccccaacc 79399
>emb|AL353683.7| Human DNA sequence from clone RP11-450P11 on chromosome 9 Contains part of the 5' UTR of a novel gene (FLJ31810), complete sequence Length = 198463 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 ttacccccaacccccaac 42 |||||||||||||||||| Sbjct: 99332 ttacccccaacccccaac 99349
>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the TYRP1 gene for tyrosinase-related protein 1, the 3' end of a novel gene and the 5' end of a novel gene (FLJ38505 FLJ90271), complete sequence Length = 162151 Score = 36.2 bits (18), Expect = 8.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 tacccccaacccccaacctgga 47 ||||||||||||||| |||||| Sbjct: 150757 tacccccaacccccatcctgga 150778
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 cttcacctggaagcaatt 26 |||||||||||||||||| Sbjct: 5055451 cttcacctggaagcaatt 5055468
>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete Sequence, complete sequence Length = 195048 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 tttcttcacctggaagca 23 |||||||||||||||||| Sbjct: 153619 tttcttcacctggaagca 153602
>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 8/10 Length = 349136 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aatttcttcacctggaag 21 |||||||||||||||||| Sbjct: 171088 aatttcttcacctggaag 171105
>gb|AC162183.4| Mus musculus BAC clone RP23-27I10 from chromosome 14, complete sequence Length = 225212 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 attacccccaacccccaa 41 |||||||||||||||||| Sbjct: 136876 attacccccaacccccaa 136859
>emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on chromosome 11 Contains a novel gene, the 3' end of the Mmd gene for monocyte to macrophage differentiation-associated and the 3' end of the Hlf gene for hepatic leukemia factor, complete sequence Length = 172696 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacct 44 |||||||||||||||||| Sbjct: 166809 acccccaacccccaacct 166826
>emb|CR762400.8| Zebrafish DNA sequence from clone DKEYP-46G10 in linkage group 21, complete sequence Length = 153630 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 30 cccaacccccaacctgga 47 |||||||||||||||||| Sbjct: 47490 cccaacccccaacctgga 47507
>gb|AC100805.2| Homo sapiens chromosome 8, clone CTC-789J18, complete sequence Length = 155955 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 cccccaacccccaacctg 45 |||||||||||||||||| Sbjct: 78442 cccccaacccccaacctg 78459
>emb|AJ229043.1| Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22, segment 3/3 Length = 288002 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 cctggaagcaattacccc 31 |||||||||||||||||| Sbjct: 27427 cctggaagcaattacccc 27444
>emb|BX530069.10| Zebrafish DNA sequence from clone DKEY-22L17 in linkage group 10, complete sequence Length = 222308 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 cccaacccccaacctgga 47 |||||||||||||||||| Sbjct: 191899 cccaacccccaacctgga 191882
>gb|AC116664.1| Papio hamadryas, clone RP41-57E23, complete sequence Length = 175388 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 tcttcacctggaagcaat 25 |||||||||||||||||| Sbjct: 20898 tcttcacctggaagcaat 20915
>gb|AC099675.2| Homo sapiens chromosome 1 clone RP11-459D6, complete sequence Length = 162806 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aaatttcttcacctggaa 20 |||||||||||||||||| Sbjct: 5138 aaatttcttcacctggaa 5121
>gb|AC107223.5| Homo sapiens BAC clone RP11-1289C17 from 4, complete sequence Length = 183515 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aatttcttcacctggaag 21 |||||||||||||||||| Sbjct: 76829 aatttcttcacctggaag 76846
>gb|AC012358.9| Homo sapiens BAC clone RP11-321E13 from 2, complete sequence Length = 162151 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 attacccccaacccccaa 41 |||||||||||||||||| Sbjct: 32392 attacccccaacccccaa 32409
>gb|AC161061.2| Pan troglodytes BAC clone CH251-489A6 from chromosome 7, complete sequence Length = 177652 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 24436 tacccccaacccccaacc 24419
>gb|AC024897.23| Homo sapiens 3 BAC RP11-505J9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204794 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 gaagcaattacccccaac 35 |||||||||||||||||| Sbjct: 35487 gaagcaattacccccaac 35504
>emb|BX571765.6| Zebrafish DNA sequence from clone DKEYP-77G7 in linkage group 23, complete sequence Length = 147933 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 30 cccaacccccaacctgga 47 |||||||||||||||||| Sbjct: 15158 cccaacccccaacctgga 15175
>gb|AC177809.2| Pan troglodytes BAC clone CH251-550E5 from chromosome 7, complete sequence Length = 180443 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 159064 tacccccaacccccaacc 159047
>emb|AL772391.18| Zebrafish DNA sequence from clone CH211-35J18 in linkage group 23, complete sequence Length = 146397 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 cccaacccccaacctgga 47 |||||||||||||||||| Sbjct: 36225 cccaacccccaacctgga 36208
>gb|AC159327.8| Mus musculus 10 BAC RP23-207L3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215004 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 acccccaacccccaacct 44 |||||||||||||||||| Sbjct: 178019 acccccaacccccaacct 178002
>dbj|AB169348.1| Macaca fascicularis testis cDNA, clone: QtsA-19176, similar to human hypothetical protein MGC33600 (MGC33600), mRNA, RefSeq: NM_182539.1 Length = 3092 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 29 ccccaacccccaacctgg 46 |||||||||||||||||| Sbjct: 2182 ccccaacccccaacctgg 2199
>gb|AC159295.2| Mus musculus BAC clone RP23-273L18 from chromosome 13, complete sequence Length = 165475 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 148596 tacccccaacccccaacc 148579
>gb|AC137146.9| Mus musculus chromosome 1, clone RP24-358I14, complete sequence Length = 189466 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 cccccaacccccaacctg 45 |||||||||||||||||| Sbjct: 38715 cccccaacccccaacctg 38732
>emb|BX465186.11| Zebrafish DNA sequence from clone DKEY-106M10 in linkage group 10, complete sequence Length = 247227 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 cccaacccccaacctgga 47 |||||||||||||||||| Sbjct: 134868 cccaacccccaacctgga 134851
>gb|AF015724.2|AF015724 Homo sapiens chromosome 21 clone cosmid clone Q71A3 map 21q22.2, complete sequence Length = 35105 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 cctggaagcaattacccc 31 |||||||||||||||||| Sbjct: 3346 cctggaagcaattacccc 3329
>gb|AF015721.2|AF015721 Homo sapiens chromosome 21 clone cosmid clone Q2A2 map 21q22.2, complete sequence Length = 39487 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 cctggaagcaattacccc 31 |||||||||||||||||| Sbjct: 28960 cctggaagcaattacccc 28943
>gb|AC138466.12| Homo sapiens 12 BAC RP13-977J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129492 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacct 44 |||||||||||||||||| Sbjct: 52237 acccccaacccccaacct 52254
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 200107 tacccccaacccccaacc 200090
>gb|AC139993.16| Mus musculus chromosome 12, clone RP23-67O10, complete sequence Length = 239577 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacct 44 |||||||||||||||||| Sbjct: 94683 acccccaacccccaacct 94700
>gb|AC087884.18| Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196742 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 tttcttcacctggaagca 23 |||||||||||||||||| Sbjct: 128188 tttcttcacctggaagca 128171
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aatttcttcacctggaag 21 |||||||||||||||||| Sbjct: 2643915 aatttcttcacctggaag 2643932
>gb|AC019172.4| Homo sapiens BAC clone RP11-178E6 from 2, complete sequence Length = 176983 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 ttacccccaacccccaac 42 |||||||||||||||||| Sbjct: 90407 ttacccccaacccccaac 90390
>gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone rp23-220f20, complete sequence Length = 172680 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacct 44 |||||||||||||||||| Sbjct: 166798 acccccaacccccaacct 166815
>gb|AC119914.10| Mus musculus chromosome 15, clone RP24-244H15, complete sequence Length = 213223 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 cccccaacccccaacctg 45 |||||||||||||||||| Sbjct: 42113 cccccaacccccaacctg 42130
>gb|AC117455.8| Homo sapiens 3 BAC RP11-307B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 73181 Score = 36.2 bits (18), Expect = 8.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 28 cccccaacccccaacctggatc 49 ||||||| |||||||||||||| Sbjct: 32576 cccccaaaccccaacctggatc 32555
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 cttcacctggaagcaatt 26 |||||||||||||||||| Sbjct: 5122547 cttcacctggaagcaatt 5122564
>dbj|BS000195.1| Pan troglodytes chromosome 22 clone:PTB-014E11, map 22, complete sequences Length = 251753 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 cctggaagcaattacccc 31 |||||||||||||||||| Sbjct: 191101 cctggaagcaattacccc 191084
>emb|BX571883.3| Zebrafish DNA sequence from clone DKEY-151P17 in linkage group 18, complete sequence Length = 253172 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 cccaacccccaacctgga 47 |||||||||||||||||| Sbjct: 5504 cccaacccccaacctgga 5487
>emb|AL808022.4| Mouse DNA sequence from clone RP23-263N6 on chromosome X, complete sequence Length = 132367 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 4457 tacccccaacccccaacc 4474
>emb|AL935207.6| Zebrafish DNA sequence from clone CH211-251J8, complete sequence Length = 146351 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 ccaacccccaacctggat 48 |||||||||||||||||| Sbjct: 37133 ccaacccccaacctggat 37116
>emb|AL163267.2|HS21C067 Homo sapiens chromosome 21 segment HS21C067 Length = 340000 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 cctggaagcaattacccc 31 |||||||||||||||||| Sbjct: 162650 cctggaagcaattacccc 162633
>emb|CR628405.8| Zebrafish DNA sequence from clone CH211-170A5 in linkage group 10, complete sequence Length = 75121 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 30 cccaacccccaacctgga 47 |||||||||||||||||| Sbjct: 73219 cccaacccccaacctgga 73236
>dbj|AP000797.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-36B5, complete sequence Length = 148490 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 ttacccccaacccccaac 42 |||||||||||||||||| Sbjct: 49300 ttacccccaacccccaac 49317
>dbj|AP002991.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-774J1, complete sequence Length = 167901 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 ttacccccaacccccaac 42 |||||||||||||||||| Sbjct: 161285 ttacccccaacccccaac 161302
>gb|AC163278.5| Mus musculus BAC clone RP24-281A21 from chromosome 12, complete sequence Length = 188100 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 acccccaacccccaacct 44 |||||||||||||||||| Sbjct: 165128 acccccaacccccaacct 165145
>emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chromosome 2, complete sequence Length = 204020 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 tacccccaacccccaacc 43 |||||||||||||||||| Sbjct: 172255 tacccccaacccccaacc 172238
>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence Length = 194611 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 tttcttcacctggaagca 23 |||||||||||||||||| Sbjct: 15427 tttcttcacctggaagca 15410
>emb|AL772328.13| Mouse DNA sequence from clone RP23-270A19 on chromosome 4, complete sequence Length = 219095 Score = 36.2 bits (18), Expect = 8.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 24 attacccccaacccccaacctg 45 ||||||||||||||||| |||| Sbjct: 214171 attacccccaacccccatcctg 214150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 585,278 Number of Sequences: 3902068 Number of extensions: 585278 Number of successful extensions: 52808 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52621 Number of HSP's gapped (non-prelim): 187 length of query: 60 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 39 effective length of database: 17,151,101,840 effective search space: 668892971760 effective search space used: 668892971760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
