>emb|AL358788.17| Human DNA sequence from clone RP11-466J21 on chromosome 1 Contains the
             5' UTR of a novel gene (KIAA0478), complete sequence
          Length = 76982

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    agagagcaaaagaaaagcggccacc 74
             ||||||||||||||||| |||||||
Sbjct: 56178 agagagcaaaagaaaagtggccacc 56154

>emb|BX537310.7| Zebrafish DNA sequence from clone CH211-138N17 in linkage group 3,
             complete sequence
          Length = 163184

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     cccttcacttgtttttgttt 28
             ||||||||||||||||||||
Sbjct: 92008 cccttcacttgtttttgttt 91989

>gb|AC064865.6| Homo sapiens BAC clone RP11-436E1 from 2, complete sequence
          Length = 197164

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tcccttcacttgtttttgtt 27
             ||||||||||||||||||||
Sbjct: 47512 tcccttcacttgtttttgtt 47531

>dbj|AP003304.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-104B12, complete
             sequences
          Length = 182218

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tcacttgtttttgtttgact 32
             ||||||||||||||||||||
Sbjct: 61047 tcacttgtttttgtttgact 61028

>ref|XM_529920.1| PREDICTED: Pan troglodytes LOC455189 (LOC455189), mRNA
          Length = 1003

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 65  agcggccaccgcgtctgct 83
           |||||||||||||||||||
Sbjct: 385 agcggccaccgcgtctgct 367

>gb|AF287967.1| Homo sapiens homeobox B7 (HOXB7) gene, partial cds; and homeobox B6
             (HOXB6), homeobox B5 (HOXB5), homeobox B4 (HOXB4), and
             homeobox B3 (HOXB3) genes, complete cds
          Length = 59339

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    agcggccaccgcgtctgct 83
             |||||||||||||||||||
Sbjct: 13244 agcggccaccgcgtctgct 13226

>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence
          Length = 211910

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      ttcccttcacttgtttttg 25
              |||||||||||||||||||
Sbjct: 110760 ttcccttcacttgtttttg 110742

>gb|AC161048.2| Mus musculus BAC clone RP24-105N22 from chromosome 12, complete sequence
          Length = 149575

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      tcccttcacttgtttttgt 26
              |||||||||||||||||||
Sbjct: 146781 tcccttcacttgtttttgt 146763

>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence
          Length = 232275

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     tcccttcacttgtttttgt 26
             |||||||||||||||||||
Sbjct: 67634 tcccttcacttgtttttgt 67616

>emb|AL445649.15| Human DNA sequence from clone RP11-381O6 on chromosome 13, complete
             sequence
          Length = 190126

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    gagagagcaaaagaaaagc 67
             |||||||||||||||||||
Sbjct: 77641 gagagagcaaaagaaaagc 77659

>gb|AC103702.3| Homo sapiens chromosome 17, clone RP11-357H14, complete sequence
          Length = 187386

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    agcggccaccgcgtctgct 83
             |||||||||||||||||||
Sbjct: 94820 agcggccaccgcgtctgct 94802

>gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 184834

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   ggagagagcaaaagaaaag 66
            |||||||||||||||||||
Sbjct: 2095 ggagagagcaaaagaaaag 2113

>gb|AC116664.1| Papio hamadryas, clone RP41-57E23, complete sequence
          Length = 175388

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     agcggccaccgcgtctgct 83
              |||||||||||||||||||
Sbjct: 124263 agcggccaccgcgtctgct 124245

>gb|AC027018.9| Homo sapiens chromosome 8, clone RP11-463D19, complete sequence
          Length = 181322

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    ccttcacttgtttttgttt 28
             |||||||||||||||||||
Sbjct: 13691 ccttcacttgtttttgttt 13673

>gb|AC100784.2| Homo sapiens chromosome 8, clone RP11-116B19, complete sequence
          Length = 173811

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    ccttcacttgtttttgttt 28
             |||||||||||||||||||
Sbjct: 77539 ccttcacttgtttttgttt 77557

>gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, complete sequence
          Length = 195979

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    ttcacttgtttttgtttga 30
             |||||||||||||||||||
Sbjct: 71533 ttcacttgtttttgtttga 71515

>gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-361K8, complete sequence
          Length = 168215

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    agcggccaccgcgtctgct 83
             |||||||||||||||||||
Sbjct: 98687 agcggccaccgcgtctgct 98669

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      cgcggcgctctcggagaga 54
               |||||||||||||||||||
Sbjct: 4201758 cgcggcgctctcggagaga 4201740

>emb|BX248097.7| Zebrafish DNA sequence from clone CH211-232M8 in linkage group 14,
             complete sequence
          Length = 171333

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    ttcacttgtttttgtttga 30
             |||||||||||||||||||
Sbjct: 47781 ttcacttgtttttgtttga 47799

>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     cttcacttgtttttgtttg 29
              |||||||||||||||||||
Sbjct: 159418 cttcacttgtttttgtttg 159400

>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     ccttcacttgtttttgttt 28
              |||||||||||||||||||
Sbjct: 995525 ccttcacttgtttttgttt 995507

>gb|BC039103.1| Homo sapiens MLCK protein, mRNA (cDNA clone IMAGE:4831102), with
            apparent retained intron
          Length = 2954

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 11   cttcacttgtttttgtttg 29
            |||||||||||||||||||
Sbjct: 2477 cttcacttgtttttgtttg 2459

>tpd|BR000146.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(PARP)-1 mRNA for zinc finger
           protein, partial cds
          Length = 1569

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  ggagagagcaaaagaaaag 66
           |||||||||||||||||||
Sbjct: 385 ggagagagcaaaagaaaag 403

>gb|AY735444.1| Enterococcus faecalis strain 10C1 lipoamidase (lpa) gene, complete
            cds
          Length = 2181

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   ccttcacttgtttttgttt 28
            |||||||||||||||||||
Sbjct: 1892 ccttcacttgtttttgttt 1874


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,414,487
Number of Sequences: 3902068
Number of extensions: 1414487
Number of successful extensions: 113345
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113232
Number of HSP's gapped (non-prelim): 113
length of query: 88
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 67
effective length of database: 17,151,101,840
effective search space: 1149123823280
effective search space used: 1149123823280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)