ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44f08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 293 bits (148), Expect = 2e-76 Identities = 169/176 (96%) Strand = Plus / Plus Query: 114 gatggacgcggagctcctggagctgcagcggcagctggaggcggcgcagagcgcgcggtc 173 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 99530 gatggacgcggagctcctggagctgcagcggcagctggaggcggcacagagcgcgcggtc 99589 Query: 174 gagcgtgcggctgtcggagcgcaacgtggtggagctcgtgcagaagttgcaggagcgcgg 233 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 99590 gagcgtgcggctgtcggagcggaacgtggtggagctcgtgcagaagctgcaggagcgcgg 99649 Query: 234 tctcatcgacttcgagctcctccacaccgtctccggcaaggagtacatcacatccg 289 |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 99650 gatcatcgacttcgagctcctccacaccacctccggcaaggagtacatcacatccg 99705 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 289 gaccatttgaagcatgagattaaggtggagatcaagaagcgagggcgcgcatcactagtc 348 |||||| |||| |||||||| ||| ||||||||||||| || || || |||||||| || Sbjct: 100384 gaccatctgaaacatgagatcaagatggagatcaagaaacgcggacgtgcatcactggta 100443 Query: 349 gatttatcagataccctgggggtggatctttaccatattgaga 391 ||||| ||||||| ||||||||||| || |||||| |||||| Sbjct: 100444 gatttgtcagatatactgggggtggacctctaccatgttgaga 100486
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 293 bits (148), Expect = 2e-76 Identities = 169/176 (96%) Strand = Plus / Plus Query: 114 gatggacgcggagctcctggagctgcagcggcagctggaggcggcgcagagcgcgcggtc 173 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 895106 gatggacgcggagctcctggagctgcagcggcagctggaggcggcacagagcgcgcggtc 895165 Query: 174 gagcgtgcggctgtcggagcgcaacgtggtggagctcgtgcagaagttgcaggagcgcgg 233 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 895166 gagcgtgcggctgtcggagcggaacgtggtggagctcgtgcagaagctgcaggagcgcgg 895225 Query: 234 tctcatcgacttcgagctcctccacaccgtctccggcaaggagtacatcacatccg 289 |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 895226 gatcatcgacttcgagctcctccacaccacctccggcaaggagtacatcacatccg 895281 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 289 gaccatttgaagcatgagattaaggtggagatcaagaagcgagggcgcgcatcactagtc 348 |||||| |||| |||||||| ||| ||||||||||||| || || || |||||||| || Sbjct: 895960 gaccatctgaaacatgagatcaagatggagatcaagaaacgcggacgtgcatcactggta 896019 Query: 349 gatttatcagataccctgggggtggatctttaccatattgaga 391 ||||| ||||||| ||||||||||| || |||||| |||||| Sbjct: 896020 gatttgtcagatatactgggggtggacctctaccatgttgaga 896062 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 ctgcagcggcagctggaggcg 156 ||||||||||||||||||||| Sbjct: 16527784 ctgcagcggcagctggaggcg 16527804
>gb|AY389662.1| Hyacinthus orientalis unknown mRNA Length = 671 Score = 61.9 bits (31), Expect = 1e-06 Identities = 112/139 (80%) Strand = Plus / Plus Query: 187 tcggagcgcaacgtggtggagctcgtgcagaagttgcaggagcgcggtctcatcgacttc 246 |||||||| ||||| || |||||||| |||||| | || || | | | || ||||||||| Sbjct: 126 tcggagcggaacgtcgtcgagctcgtccagaagctccaagaactccgccttatcgacttc 185 Query: 247 gagctcctccacaccgtctccggcaaggagtacatcacatccgaccatttgaagcatgag 306 || |||||||||||||| | ||||| ||||||||||| | || || ||| ||| ||| Sbjct: 186 gatctcctccacaccgttacaggcaaagagtacatcactccggatcaattgcggcacgag 245 Query: 307 attaaggtggagatcaaga 325 ||| |||| |||||||||| Sbjct: 246 attgaggtcgagatcaaga 264
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 74 ccggcgacgccgcagcggatcgcg 97 |||||||||||||||||||||||| Sbjct: 1854233 ccggcgacgccgcagcggatcgcg 1854256
>ref|XM_450627.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2124 Score = 46.1 bits (23), Expect = 0.085 Identities = 26/27 (96%) Strand = Plus / Plus Query: 68 ccgtctccggcgacgccgcagcggatc 94 ||||||||||||||||||| ||||||| Sbjct: 45 ccgtctccggcgacgccgccgcggatc 71
>gb|DQ397871.1| Cenarchaeum symbiosum clone C18C04, complete sequence Length = 36161 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Plus Query: 133 gagctgcagcggcagctggaggc 155 ||||||||||||||||||||||| Sbjct: 7570 gagctgcagcggcagctggaggc 7592
>gb|DQ397634.1| Cenarchaeum symbiosum clone C05E04, complete sequence Length = 40921 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Plus Query: 133 gagctgcagcggcagctggaggc 155 ||||||||||||||||||||||| Sbjct: 7219 gagctgcagcggcagctggaggc 7241
>gb|DQ397620.1| Cenarchaeum symbiosum clone C07H12, complete sequence Length = 40229 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Minus Query: 133 gagctgcagcggcagctggaggc 155 ||||||||||||||||||||||| Sbjct: 99 gagctgcagcggcagctggaggc 77
>gb|DQ397578.1| Cenarchaeum symbiosum clone C13F12, complete sequence Length = 39464 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Minus Query: 133 gagctgcagcggcagctggaggc 155 ||||||||||||||||||||||| Sbjct: 36033 gagctgcagcggcagctggaggc 36011
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.085 Identities = 26/27 (96%) Strand = Plus / Plus Query: 68 ccgtctccggcgacgccgcagcggatc 94 ||||||||||||||||||| ||||||| Sbjct: 11880869 ccgtctccggcgacgccgccgcggatc 11880895
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 46.1 bits (23), Expect = 0.085 Identities = 26/27 (96%) Strand = Plus / Plus Query: 68 ccgtctccggcgacgccgcagcggatc 94 ||||||||||||||||||| ||||||| Sbjct: 62359 ccgtctccggcgacgccgccgcggatc 62385
>dbj|AK111875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043A02, full insert sequence Length = 2124 Score = 46.1 bits (23), Expect = 0.085 Identities = 26/27 (96%) Strand = Plus / Plus Query: 68 ccgtctccggcgacgccgcagcggatc 94 ||||||||||||||||||| ||||||| Sbjct: 45 ccgtctccggcgacgccgccgcggatc 71
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 gcggatcgcgccggcagcgaag 109 |||||||||||||||||||||| Sbjct: 3078796 gcggatcgcgccggcagcgaag 3078817
>emb|AL157761.8| Human DNA sequence from clone RP11-131F1 on chromosome 13, complete sequence Length = 31426 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 302 atgagattaaggtggagatcaagaag 327 |||||||||||||||| ||||||||| Sbjct: 12182 atgagattaaggtggaaatcaagaag 12157
>gb|AC105219.6| Homo sapiens chromosome 8, clone RP11-429J17, complete sequence Length = 177816 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 137 tgcagcggcagctggaggcggcgcag 162 ||||||||||||||||||||| |||| Sbjct: 38392 tgcagcggcagctggaggcggtgcag 38367
>ref|XM_937564.1| PREDICTED: Homo sapiens hypothetical protein LOC648513 (LOC648513), mRNA Length = 1479 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 137 tgcagcggcagctggaggcggcgcag 162 ||||||||||||||||||||| |||| Sbjct: 1274 tgcagcggcagctggaggcggtgcag 1299
>ref|XM_926060.1| PREDICTED: Homo sapiens similar to CG3104-PA, isoform A (LOC642574), mRNA Length = 1665 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 137 tgcagcggcagctggaggcggcgcag 162 ||||||||||||||||||||| |||| Sbjct: 1460 tgcagcggcagctggaggcggtgcag 1485
>gb|AC105049.4| Homo sapiens chromosome 8, clone RP11-299M14, complete sequence Length = 92291 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 137 tgcagcggcagctggaggcggcgcag 162 ||||||||||||||||||||| |||| Sbjct: 69925 tgcagcggcagctggaggcggtgcag 69900
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 ctgcagcggcagctggaggcg 156 ||||||||||||||||||||| Sbjct: 26523 ctgcagcggcagctggaggcg 26543
>ref|XM_583626.2| PREDICTED: Bos taurus hypothetical LOC507073 (LOC507073), mRNA Length = 2007 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctgga 152 ||||||||||||||||||||| Sbjct: 387 ggagctgcagcggcagctgga 407
>ref|XM_870885.1| PREDICTED: Bos taurus similar to myosin, heavy polypeptide 7B, cardiac muscle, beta (LOC521764), mRNA Length = 6475 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctggaggcggcgcagag 164 |||| |||||||| ||||||||||||| ||||| Sbjct: 5070 ggagatgcagcgggagctggaggcggcccagag 5102
>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence Length = 366816 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 gagctgcagcggcagctggag 153 ||||||||||||||||||||| Sbjct: 260075 gagctgcagcggcagctggag 260055
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 agctgcagcggcagctggagg 154 ||||||||||||||||||||| Sbjct: 821232 agctgcagcggcagctggagg 821212
>ref|XM_842757.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0827) partial mRNA Length = 999 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 agctgcagcggcagctggagg 154 ||||||||||||||||||||| Sbjct: 362 agctgcagcggcagctggagg 382
>gb|BC007808.1| Homo sapiens myosin, heavy polypeptide 7B, cardiac muscle, beta, mRNA (cDNA clone IMAGE:4298477), partial cds Length = 3289 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctggaggcggcgcagag 164 |||| |||||||| ||||||||||||| ||||| Sbjct: 1600 ggagatgcagcgggagctggaggcggcacagag 1632 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctgg 151 |||||||||||||||||||| Sbjct: 1009 ggagctgcagcggcagctgg 1028
>emb|AL132825.35|HSDJ756N5 Human DNA sequence from clone RP4-756N5 on chromosome 20q11.21-12 Contains the MYH7B gene for myosin heavy polypeptide 7B (cardiac muscle) beta, the C20orf188 gene for a novel protein similar to Trp4-associated protein TAP1 (ABCB2) and two CpG islands, complete sequence Length = 123782 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctggaggcggcgcagag 164 |||| |||||||| ||||||||||||| ||||| Sbjct: 19715 ggagatgcagcgggagctggaggcggcacagag 19747 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctgg 151 |||||||||||||||||||| Sbjct: 18806 ggagctgcagcggcagctgg 18825
>gb|AC023687.3| Drosophila melanogaster X BAC RP98-36C7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185848 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 gcggagctcctggagctgcag 141 ||||||||||||||||||||| Sbjct: 168438 gcggagctcctggagctgcag 168418
>gb|AC023690.3| Drosophila melanogaster X BAC RP98-6M20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 176233 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 gcggagctcctggagctgcag 141 ||||||||||||||||||||| Sbjct: 140266 gcggagctcctggagctgcag 140286
>ref|NM_020884.1| Homo sapiens myosin, heavy polypeptide 7B, cardiac muscle, beta (MYH7B), mRNA Length = 6289 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctggaggcggcgcagag 164 |||| |||||||| ||||||||||||| ||||| Sbjct: 4622 ggagatgcagcgggagctggaggcggcacagag 4654 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctgg 151 |||||||||||||||||||| Sbjct: 4031 ggagctgcagcggcagctgg 4050
>ref|XM_230774.3| PREDICTED: Rattus norvegicus myosin, heavy polypeptide 7B, cardiac muscle, beta (predicted) (Myh7b_predicted), mRNA Length = 6165 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctggaggcggcgcagag 164 |||| |||||||| | ||||||||||||||||| Sbjct: 4641 ggagatgcagcgggaactggaggcggcgcagag 4673
>gb|AE003488.3| Drosophila melanogaster chromosome X, section 40 of 74 of the complete sequence Length = 315134 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 gcggagctcctggagctgcag 141 ||||||||||||||||||||| Sbjct: 181700 gcggagctcctggagctgcag 181720
>dbj|AB040945.2| Homo sapiens mRNA for KIAA1512 protein, partial cds Length = 6289 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctggaggcggcgcagag 164 |||| |||||||| ||||||||||||| ||||| Sbjct: 4622 ggagatgcagcgggagctggaggcggcacagag 4654 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctgg 151 |||||||||||||||||||| Sbjct: 4031 ggagctgcagcggcagctgg 4050
>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete sequence Length = 242530 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ggagctgcagcggcagctgga 152 ||||||||||||||||||||| Sbjct: 48530 ggagctgcagcggcagctgga 48510
>ref|XM_474423.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1650 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 agctcctggagctgcagcggcagc 148 |||||| ||||||||||||||||| Sbjct: 1098 agctccaggagctgcagcggcagc 1121
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cgaaggcgcgatggacgcgg 124 |||||||||||||||||||| Sbjct: 1435720 cgaaggcgcgatggacgcgg 1435701
>ref|XM_413933.1| PREDICTED: Gallus gallus similar to NADPH oxidase 5 alpha (LOC415565), mRNA Length = 3105 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ggagctgcagcggcagctggaggc 155 ||||||||||| |||||||||||| Sbjct: 600 ggagctgcagcagcagctggaggc 623
>ref|XM_419571.1| PREDICTED: Gallus gallus similar to hypothetical protein DKFZp547N043 (LOC421530), mRNA Length = 1813 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 agctcctggagctgcagcggcagc 148 ||||||||||||||||||| |||| Sbjct: 200 agctcctggagctgcagcgccagc 177
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cgaaggcgcgatggacgcgg 124 |||||||||||||||||||| Sbjct: 2661851 cgaaggcgcgatggacgcgg 2661832
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tccccgtctccggcgacgcc 84 |||||||||||||||||||| Sbjct: 4025532 tccccgtctccggcgacgcc 4025513
>gb|AC006672.2| Caenorhabditis elegans cosmid K08D12, complete sequence Length = 33673 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ctggagctgcagcggcagctggag 153 ||||||||| |||||||||||||| Sbjct: 26996 ctggagctggagcggcagctggag 26973
>ref|XM_756004.1| Ustilago maydis 521 hypothetical protein (UM04950.1) partial mRNA Length = 3345 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cctggagctgcagcggcagctggaggcg 156 |||||||||||||| ||||||| ||||| Sbjct: 2897 cctggagctgcagctgcagctgcaggcg 2870
>ref|XM_541475.2| PREDICTED: Canis familiaris similar to SH3 and multiple ankyrin repeat domains protein 1 (Shank1) (GKAP/SAPAP interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor interacting protein) (SSTR interacting protein) (SSTRIP) (LOC484359), mRNA Length = 3516 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gctcctggagctgcagcggc 145 |||||||||||||||||||| Sbjct: 2936 gctcctggagctgcagcggc 2917
>emb|BX571818.3| Human DNA sequence from clone RP11-38J22 on chromosome 1 Contains a novel gene, a ribosomal protein L22 (RPL22) pseudogene, a novel gene, the AVPR1B gene for arginine vasopressin receptor 1B, two novel genes, the CTSE gene for cathepsin E and two CpG islands, complete sequence Length = 170924 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 127 ctcctggagctgcagcggcagctggagg 154 |||||||||| ||||||||||| ||||| Sbjct: 144776 ctcctggagcggcagcggcagcgggagg 144803
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgaaggcgcgatggacgcgg 124 |||||||||||||||||||| Sbjct: 2283103 cgaaggcgcgatggacgcgg 2283122
>gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 of the complete genome Length = 324746 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 123 ggagctcctggagctgcagcggcagctggagg 154 |||||| ||| || |||||||||||||||||| Sbjct: 13064 ggagctgctgtaggtgcagcggcagctggagg 13033
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgaaggcgcgatggacgcgg 124 |||||||||||||||||||| Sbjct: 1721626 cgaaggcgcgatggacgcgg 1721645
>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12, complete sequence Length = 144670 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 agctcctggagctgcagcggcagc 148 |||||| ||||||||||||||||| Sbjct: 3672 agctccaggagctgcagcggcagc 3649
>emb|AJ245966.1|DRE245966 Danio rerio mRNA for Pbx4/Lazarus homeodomain protein (pbx4 gene, lzr gene) Length = 2438 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 gctgcagcggcagctggagg 154 |||||||||||||||||||| Sbjct: 936 gctgcagcggcagctggagg 955
>gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from chromosome unknown, complete sequence Length = 188107 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctgcagcggcagctggaggc 155 |||||||||||||||||||| Sbjct: 138495 ctgcagcggcagctggaggc 138476
>ref|XM_943542.1| PREDICTED: Homo sapiens hypothetical protein LOC649019 (LOC649019), mRNA Length = 777 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggacgcggagctcctggagc 136 |||||||||||||||||||| Sbjct: 665 ggacgcggagctcctggagc 646
>ref|XM_933529.1| PREDICTED: Homo sapiens hypothetical protein LOC646305 (LOC646305), mRNA Length = 777 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggacgcggagctcctggagc 136 |||||||||||||||||||| Sbjct: 665 ggacgcggagctcctggagc 646
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 123 ggagctcctggagctgcagcggcagctggagg 154 |||||| ||| || |||||||||||||||||| Sbjct: 1154512 ggagctgctgtaggtgcagcggcagctggagg 1154543
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 gcggagctcctggagctgcagcggcagc 148 ||||||| || ||||||||||||||||| Sbjct: 1472456 gcggagcgccaggagctgcagcggcagc 1472483
>ref|NM_171275.2| Caenorhabditis elegans K08D12.6 (K08D12.6) mRNA, complete cds Length = 2181 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ctggagctgcagcggcagctggag 153 ||||||||| |||||||||||||| Sbjct: 1036 ctggagctggagcggcagctggag 1013
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 agctcctggagctgcagcggcagc 148 |||||| ||||||||||||||||| Sbjct: 35067169 agctccaggagctgcagcggcagc 35067146
>gb|DQ009621.1| Methanotorris igneus ribosomal protein L1 operon, complete sequence Length = 2320 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ctggagctgcagcggcagctggag 153 ||||||||||||| |||||||||| Sbjct: 2113 ctggagctgcagcagcagctggag 2090
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 123 ggagctcctggagctgcagcggcagctggagg 154 |||||| ||| || |||||||||||||||||| Sbjct: 916930 ggagctgctgtaggtgcagcggcagctggagg 916899
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 123 ggagctcctggagctgcagcggcagctggagg 154 |||||| ||| || |||||||||||||||||| Sbjct: 916252 ggagctgctgtaggtgcagcggcagctggagg 916221
>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete sequence Length = 112897 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 agctcctggagctgcagcggcagc 148 |||||| ||||||||||||||||| Sbjct: 21902 agctccaggagctgcagcggcagc 21879
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 agcgaaggcgcgatggacgc 122 |||||||||||||||||||| Sbjct: 1193906 agcgaaggcgcgatggacgc 1193887
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgaaggcgcgatggacgcgg 124 |||||||||||||||||||| Sbjct: 2481112 cgaaggcgcgatggacgcgg 2481131
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 agctcctggagctgcagcggcagc 148 |||||| ||||||||||||||||| Sbjct: 126216 agctccaggagctgcagcggcagc 126193
>emb|AL513423.3|HS518K17 Homo sapiens chromosome 9 BAC RP11-518K17, complete sequence Length = 170535 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggacgcggagctcctggagc 136 |||||||||||||||||||| Sbjct: 83582 ggacgcggagctcctggagc 83563
>emb|AL590327.3|CNS07EG8 Human chromosome 14 DNA sequence Partial sequence from BAC C-2507D9 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 59297 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gcggcagctggaggcggcgc 160 |||||||||||||||||||| Sbjct: 23318 gcggcagctggaggcggcgc 23299 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,565,259 Number of Sequences: 3902068 Number of extensions: 2565259 Number of successful extensions: 56845 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55701 Number of HSP's gapped (non-prelim): 1144 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
