ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 40 1.2
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 40 1.2
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.6
4gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, co... 38 4.6
5gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, comp... 38 4.6
6gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete... 38 4.6
7gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 1... 38 4.6
8gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, comple... 38 4.6
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
11gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, com... 38 4.6
12dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6

>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
           sequence
          Length = 2863

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 73  ccgcgatttcctccccggcgccccgccgattc 104
           |||||||||||||| ||||  |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattc 32



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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit
           mRNA, complete cds
          Length = 2887

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 73  ccgcgatttcctccccggcgccccgccgattc 104
           |||||||||||||| ||||  |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattc 32



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 68     ttcctccgcgatttcctcc 86
              |||||||||||||||||||
Sbjct: 119475 ttcctccgcgatttcctcc 119457



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>gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, complete sequence
          Length = 196738

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 24   aacccaaccctcccccaag 42
            |||||||||||||||||||
Sbjct: 4665 aacccaaccctcccccaag 4683



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>gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, complete sequence
          Length = 204127

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     cccaaccctcccccaagag 44
              |||||||||||||||||||
Sbjct: 142349 cccaaccctcccccaagag 142331



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>gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete sequence
          Length = 234834

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    aaccctcccccaagagaag 47
             |||||||||||||||||||
Sbjct: 71536 aaccctcccccaagagaag 71554



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>gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 15, complete sequence
          Length = 135612

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    aacccaaccctcccccaag 42
             |||||||||||||||||||
Sbjct: 73612 aacccaaccctcccccaag 73630



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>gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, complete sequence
          Length = 203403

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    cccaaccctcccccaagag 44
             |||||||||||||||||||
Sbjct: 61178 cccaaccctcccccaagag 61196



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 68       ttcctccgcgatttcctcc 86
                |||||||||||||||||||
Sbjct: 20966115 ttcctccgcgatttcctcc 20966097



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 68       ttcctccgcgatttcctcc 86
                |||||||||||||||||||
Sbjct: 21728299 ttcctccgcgatttcctcc 21728281



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>gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, complete sequence
          Length = 205302

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   aacccaaccctcccccaag 42
            |||||||||||||||||||
Sbjct: 8822 aacccaaccctcccccaag 8804



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>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1274F11
          Length = 171257

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    ttcctccgcgatttcctcc 86
             |||||||||||||||||||
Sbjct: 58204 ttcctccgcgatttcctcc 58186


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 553,958
Number of Sequences: 3902068
Number of extensions: 553958
Number of successful extensions: 31945
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31907
Number of HSP's gapped (non-prelim): 38
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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