>ICP47_CHV1E (Q8JP02) ICP47 protein (Infected cell protein 47) (Immediate-early|
           protein IE12) (Immediate-early-5) (Vmw12) (US12 protein)
          Length = 81

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -1

Query: 209 HHAQPDYLAILEPNRELRKISQESRGGEEWGLAEPGAKY----PGQAGPPCAGVFASGEA 42
           HH  P Y A ++  RELR  + E R      +A P          QA PP     ++ EA
Sbjct: 14  HHPSPRYQAHVDLRRELRAYADEERREAARAIAHPERPLLPPPATQAAPPQP---STREA 70

Query: 41  SFPSALTGA 15
           + PSA T A
Sbjct: 71  AHPSAPTAA 79

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 7   SRQAPVKAEGKEASPDANTPAQGGP--ACPGYFAPGSANPHSSPP 135
           +R +P K     +SP +  PA   P  A P   AP SA P S+ P
Sbjct: 321 ARYSPAKTNSPPSSPASAAPASAAPASAAPASAAPASAAPASAAP 365

>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 581

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 7   SRQAPVKAEGKEASPDANTPAQGGPAC--PGYFAPGSANPHSSPP 135
           ++ +P       ASP   +PAQ  PA   PG  +P  A+P  +PP
Sbjct: 22  AQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPP 66

>DNLJ_MIMIV (Q5UPZ0) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase|
           [NAD+]) (NAD-dependent DNA ligase)
          Length = 636

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = -2

Query: 295 EQPNISNFFQLNSPTIHMRQRCRVNHAQATMRNRTILLSWNQIVSSEKSVKNQGEAKSG 119
           E PN   F+++ + TI ++      +++   +N+T++ +  +    +K ++N+G   SG
Sbjct: 535 EMPNFQKFYKVINKTITIKPYISEVNSEGIFQNQTVVFTGFRNADWQKFIENEGGKVSG 593

>ADA2B_DIDMA (O77715) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 382

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
 Frame = +1

Query: 1   RRSRQAPVKAEGKEASPDANT--PAQGGPACPGYFAP------GSANPHSSPP 135
           RR+RQ P    GK+A  D +T   A GG +      P      G AN HS PP
Sbjct: 188 RRNRQGP---HGKQAPGDGDTGPSALGGTSTISKLPPSILPAVGEANGHSKPP 237

>SNPC4_MOUSE (Q8BP86) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)|
            (snRNA-activating protein complex 190 kDa subunit) (SNAPc
            190 kDa subunit)
          Length = 1333

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 4    RSRQAPVKAEGKEASPDANTPAQGGPACPGYFAPGSANPHSSPPLDS 144
            R+RQ    A   +ASP A  P Q     PG  AP      +  PLD+
Sbjct: 1267 RARQLDCMACRVQASPAAPDPVQSHLVSPGQRAPSPGEVSAPSPLDA 1313

>Y855_TREPA (O83827) Hypothetical protein TP0855 precursor|
          Length = 1127

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 52  DANTPAQGGPACPGYFAPGSANPHS 126
           DA + A   PA PG  AP +A PHS
Sbjct: 221 DAYSAAPAAPAAPGARAPSAAYPHS 245

>Y3291_MYCPA (Q73US5) UPF0182 protein MAP_3291c|
          Length = 993

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 19   PVKAEGKEASPDANTPAQGGPACPGYFAPGSANPHSSPPLDS*LIFLS 162
            P +     ASP AN PA   PA      PGSA P ++PP+    + LS
Sbjct: 906  PTEGGAPAASPPANAPA---PAV----TPGSAPPVAAPPVPDGSVTLS 946

>CXA3_SHEEP (Q9TU17) Gap junction alpha-3 protein (Connexin-44) (Cx44)|
          Length = 412

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 7   SRQAPVKAEGKEASPDANTPAQGGPACPGYFAPGSA 114
           +R+A  +   ++ASP A+TP       P  F PG A
Sbjct: 328 NREAEPQTSARKASPPASTPPAAPAGGPQQFLPGGA 363

>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed|
          Length = 596

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 70  QGGPACPGYFAPG--SANPHSSPPLDS*LIFLSSRFGSKIA 186
           +GG  C G+   G  SA PH+ PPL S L    S+ G  +A
Sbjct: 350 EGGTGCGGHGCCGGASATPHNMPPLGS-LCKTVSQIGQHVA 389

>PO5F1_BRARE (Q90270) POU domain, class 5, transcription factor 1 (POU domain|
           protein 2)
          Length = 472

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 22  VKAEGKEASPDANTPAQGGPACPGYFAPGSANPHSSPPL 138
           V+A+  E SP    P  GG   PG   PG A+P  +P L
Sbjct: 410 VEAQYYEQSPPP-PPHMGGTVLPGQGYPGPAHPGGAPAL 447

>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -2

Query: 250  IHMRQRCRVNHAQATMRNRTILLSWNQIVSSEKSVKNQGEAKSGDWRNLGRSILGRQDLP 71
            +  ++R     A+     +  L +W++ +   K+ K + E    D R   + I   ++ P
Sbjct: 1876 LEWKRRLDAEEAEIRQMEKQALAAWDKELIKPKTPKKELE----DQRTEQKEIASEEESP 1931

Query: 70   APAYSH 53
             P YSH
Sbjct: 1932 VPLYSH 1937

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 10  RQAPVKAEGKEASPDANTPAQGGPACPGYFAPGSANPHSSPP 135
           + AP K + ++ +P    P Q  PA P    P  A P   PP
Sbjct: 419 QSAPAKPQPQQPAPAKPQPQQPTPAKPQPQPPTPAKPQPQPP 460

>KADC2_ARATH (Q9FIJ7) Probable adenylate kinase 2, chloroplast precursor (EC|
           2.7.4.3) (ATP-AMP transphosphorylase)
          Length = 283

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 331 SPTPPPLFCSRHEQPNISNFFQLNSPTIHMRQRCRVNHAQATMRNRTILLSWNQIVSSEK 152
           S +PPP+   RH      + F L+   +H   R R        R+ +I+    QIV++EK
Sbjct: 7   SISPPPVTLYRHRASPSRSSFSLSGDALHSLYRHR-----RVSRSPSIIAPKFQIVAAEK 61

Query: 151 S 149
           S
Sbjct: 62  S 62

>PAKM_DROME (Q9VXE5) Serine/threonine-protein kinase PAK mbt (EC 2.7.11.1)|
           (p21-activated kinase-related protein) (Protein mushroom
           bodies tiny)
          Length = 639

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 1   RRSRQAPVKAEGKEASPDANTPAQGGPACPGYFAPGS 111
           RR    P     +E  P A TP  GG +  G+  PG+
Sbjct: 153 RRVANVPPSVPEEEGPPAAGTPGVGGASSGGFKPPGA 189

>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1281

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 34  GKEASPDANTPAQGGPACPGYFAPGSANPHSSPPLDS 144
           G+ +S + +TPAQ   A P    P   +P ++PPL S
Sbjct: 176 GELSSSEPSTPAQTPLAAPIIPTPALTSPGAAPPLPS 212

>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis|
           pigmentosa 1-like protein 1)
          Length = 1859

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 131 GEEWGLAEPGAKYPGQAGPPCAGVFASGEASFPS 30
           G  WG+ +PGA+  G     C   F  G+ S PS
Sbjct: 390 GYPWGILKPGAQGLGSYDGGCQEAFDVGQKSQPS 423

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
 Frame = +1

Query: 13  QAPVKAEGKEASPDANTPA------------QGGPACPGYFAPGSANPHSSPP 135
           Q+P KA G   +P    P             Q GPA P    PGS  P S  P
Sbjct: 428 QSPAKAPGPTKTPAQTKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQP 480

>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +1

Query: 10  RQAPVKAEGKEASPDANTPAQGGPACPGYFAPGSANPHSSPP 135
           R  P  A+   A P    P  G  A  G   PG+A P SSPP
Sbjct: 28  RSGPTSAQ-TPAPPQPTQPPPGPAAASG---PGAAGPASSPP 65

>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)|
          Length = 627

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 146 QESRGGEEWGLAEPGAKYPGQAGPPCAGVFASGEASFPSALTG 18
           Q+  GG   G   PG   PGQ GP   G +  G AS  +A  G
Sbjct: 321 QQGLGGYGPGQQGPGGYGPGQQGP---GGYGPGSASAAAAAAG 360

>ERMAP_MOUSE (Q9JLN5) Erythroid membrane-associated protein precursor|
          Length = 566

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 146 QESRGGEEWGLAEPGAKYPGQAGPPCAGVFASGEASFPS 30
           ++SRG E   L  P   +  +  P C G+F   EA   S
Sbjct: 423 RQSRGNEYEALTSPQTSFRLKESPKCVGIFLDYEAGIIS 461

>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1280

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 34  GKEASPDANTPAQGGPACPGYFAPGSANPHSSPPLDS 144
           G+ +S + +TPAQ   A P    P   +P ++PPL S
Sbjct: 176 GELSSSEPSTPAQTPLAAPIIPTPALTSPGAAPPLPS 212

>PEB1_DROME (Q9U6L5) Ejaculatory bulb-specific protein 1 precursor (Ejaculatory|
           bulb-specific protein I) (PEB-me)
          Length = 377

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -1

Query: 140 SRGGEEWGLAEPGAKYPGQAGPPCAGVFASGEASFPSALTGAWR 9
           S GG   G   PG   PG  GP   G F  G    P    G W+
Sbjct: 192 SPGGPSPGGPSPGGPSPG--GPSPGGPFPGGSPPSPGGPLGPWQ 233

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 13   QAPVKAEGKEASPDANTPAQGGPACPGYFAPGS-ANPHSSPPL 138
            Q+P      +  P A   A   P+ P  F PGS  +P++ PPL
Sbjct: 2066 QSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPL 2108

>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN|
           domain-containing protein 10)
          Length = 725

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 173 PNRELRKISQESRGGEEWG---LAEPGAKYPGQAGPPCAGVFASGEAS 39
           P++E  +  QE   G  W    LAE  A  PG  G PCA     G A+
Sbjct: 214 PDKE--EFKQEEPKGAAWPTPILAESQADSPGVPGEPCAQSLGRGAAA 259

>BCL2_HUMAN (P10415) Apoptosis regulator Bcl-2|
          Length = 239

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 140 SRGGEEWGLAEPGAKYPGQAGPPCAGVFAS--GEASFPSA 27
           S+ G EW   + GA  PG A  P  G+F+S  G    P+A
Sbjct: 24  SQRGYEWDAGDVGAAPPGAA--PAPGIFSSQPGHTPHPAA 61

>NUCM_MOUSE (Q91WD5) NADH-ubiquinone oxidoreductase 49 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-49KD) (CI-49KD)
          Length = 463

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 182 ILEPNRELRKISQESRGGEEWGLAEPGAKYPGQAGPPCAGVFASGEASFPSALTGAWR 9
           +L P   +R  SQ SRG  +W   +P  ++  Q          SG   +PS  T  W+
Sbjct: 17  VLRPGSGIRLPSQPSRGARQW---QPDIEWAEQ---------FSGAVMYPSKETAHWK 62

>TRSF_DROVI (Q24761) Female-specific protein transformer|
          Length = 199

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 23/93 (24%), Positives = 44/93 (47%)
 Frame = -2

Query: 331 SPTPPPLFCSRHEQPNISNFFQLNSPTIHMRQRCRVNHAQATMRNRTILLSWNQIVSSEK 152
           +PTPP    SRHE+P   +  + +SP    + RC+   +++ +R+R+         S  +
Sbjct: 49  TPTPPRERRSRHERPRSRS--RTHSPE---QSRCQRRLSRSYVRHRSGSRQKTYSSSCSR 103

Query: 151 SVKNQGEAKSGDWRNLGRSILGRQDLPAPAYSH 53
             +++  ++S       R I     +PA  YS+
Sbjct: 104 RRRSRSRSRSRGRSRTPRIITVPVPVPAAEYSY 136

>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)|
           (Forkhead-related transcription factor 9) (FREAC-9)
          Length = 497

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = +1

Query: 19  PVKAEGKEASPDANTPAQGGPA-------CPGYFAPGSANPHSSPPLDS*LIFLSSRFGS 177
           P   EG    P A     GG A        P   AP + +   S P D+ L+   SRF S
Sbjct: 430 PGAGEGSPGPPFAAAAGPGGQAQVLAMLTAPA-LAPVAGHIRLSHPGDA-LLSSGSRFAS 487

Query: 178 KIAR*SGC 201
           K+A  SGC
Sbjct: 488 KVAGLSGC 495

>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 16  APVKAEGKEASPDANTPAQGGPACPGYFAPGSANPHSSPP 135
           AP   + K+  P    P   GP  PG   PG+  P   PP
Sbjct: 431 APSGDKPKKKPPPPAGPPPPGPPSPGPAPPGARPPPGPPP 470

>Y1228_SYNPX (Q7U6V8) Hypothetical RNA methyltransferase SYNW1228 (EC 2.1.1.-)|
          Length = 465

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 331 SPTPPPLFCSRHEQPNISNFFQLNSPTIHMRQRCRVN 221
           +PT   LFC    Q + + FFQ+N+P       C V+
Sbjct: 273 APTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVS 309

>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)|
          Length = 477

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +3

Query: 60  YAGAGRSCLPRILRPRFRQSPLFASP*FLTDFSELT 167
           Y G     LP  LR   R SP F+ P F     ELT
Sbjct: 100 YVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELT 135

>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)|
          Length = 477

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +3

Query: 60  YAGAGRSCLPRILRPRFRQSPLFASP*FLTDFSELT 167
           Y G     LP  LR   R SP F+ P F     ELT
Sbjct: 100 YVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELT 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,035,344
Number of Sequences: 219361
Number of extensions: 1029552
Number of successful extensions: 3741
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3731
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)