ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL355332.8| Human DNA sequence from clone RP11-390F23 on chr... 40 4.4
2gb|AY308284.1| Oligosoma maccanni 16S ribosomal RNA gene, partia... 40 4.4
3gb|AC131097.6| Homo sapiens BAC clone RP11-789L24 from 2, comple... 40 4.4
4gb|AF363458.1| Homo sapiens programmed cell death 1 (PDCD1) gene... 40 4.4
5gb|AC127894.6| Homo sapiens 12 BAC RP11-324P9 (Roswell Park Canc... 40 4.4
6gb|AC092601.3| Homo sapiens BAC clone RP11-125M15 from 2, comple... 40 4.4

>emb|AL355332.8| Human DNA sequence from clone RP11-390F23 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 182997

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   ttctgagctcacgatttggttcca 178
             |||||||||||| |||||||||||
Sbjct: 37506 ttctgagctcactatttggttcca 37529



to top

>gb|AY308284.1| Oligosoma maccanni 16S ribosomal RNA gene, partial sequence;
          mitochondrial gene for mitochondrial product
          Length = 524

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 72 gggaggtcctgcctgcccag 91
          ||||||||||||||||||||
Sbjct: 5  gggaggtcctgcctgcccag 24



to top

>gb|AC131097.6| Homo sapiens BAC clone RP11-789L24 from 2, complete sequence
          Length = 187030

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gaggtcctgcctgcccagga 93
             ||||||||||||||||||||
Sbjct: 70538 gaggtcctgcctgcccagga 70557



to top

>gb|AF363458.1| Homo sapiens programmed cell death 1 (PDCD1) gene, exons 1 through 5
            and complete cds
          Length = 9625

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   gaggtcctgcctgcccagga 93
            ||||||||||||||||||||
Sbjct: 1130 gaggtcctgcctgcccagga 1111



to top

>gb|AC127894.6| Homo sapiens 12 BAC RP11-324P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96967

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    ggaaggaaaggaggcctccc 49
             ||||||||||||||||||||
Sbjct: 67713 ggaaggaaaggaggcctccc 67694



to top

>gb|AC092601.3| Homo sapiens BAC clone RP11-125M15 from 2, complete sequence
          Length = 198364

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ttgattcttgactgattttt 156
             ||||||||||||||||||||
Sbjct: 94180 ttgattcttgactgattttt 94161


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,058,459
Number of Sequences: 3902068
Number of extensions: 2058459
Number of successful extensions: 36101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36095
Number of HSP's gapped (non-prelim): 6
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top