ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44e08 |
|---|---|
| Clone Library Name | barley_pub |
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2157 Score = 33.1 bits (74), Expect = 0.31 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = +1 Query: 148 PFPPTPAYPRRRACSSRRGTGWPPLARAALGRPWASGLRWRAGRDEEGRGLTP 306 P PP P Y G PP++R L P L W G DE + TP Sbjct: 827 PVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTP 879
>VE2_HPV65 (Q07851) Regulatory protein E2| Length = 402 Score = 30.8 bits (68), Expect = 1.5 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Frame = +1 Query: 145 IPFPPTPAYP---RRRACSSRRGTGWPPLARAALGRPWASGLRWRAGRDEEGRGLTPMMS 315 +P P TP Y + C + P + + P SGLR R GR + G P + Sbjct: 215 LPGPSTPTYTELTQASPCGRGKSRESQPTSTTS---PETSGLRVRRGRRQRKSGPGPGET 271 Query: 316 DASSDLGGGRAG 351 + GGGR G Sbjct: 272 PSKRRRGGGRGG 283
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 30.4 bits (67), Expect = 2.0 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 16/82 (19%) Frame = +1 Query: 238 GRPWASGLRWRAGRDE--EGRGLTPM------MSDASSDLG--------GGRAGPVERDI 369 GRP +R R G D GRG PM D S G GGR G R++ Sbjct: 248 GRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNL 307 Query: 370 EQAITALKKGAYLLKYGRRGKP 435 +G L+ Y RRG+P Sbjct: 308 PLPPPPPPRGGDLMAYDRRGRP 329
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 30.4 bits (67), Expect = 2.0 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 16/82 (19%) Frame = +1 Query: 238 GRPWASGLRWRAGRDE--EGRGLTPM------MSDASSDLG--------GGRAGPVERDI 369 GRP +R R G D GRG PM D S G GGR G R++ Sbjct: 248 GRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNL 307 Query: 370 EQAITALKKGAYLLKYGRRGKP 435 +G L+ Y RRG+P Sbjct: 308 PLPPPPPPRGGDLMAYDRRGRP 329
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 30.4 bits (67), Expect = 2.0 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 16/82 (19%) Frame = +1 Query: 238 GRPWASGLRWRAGRDE--EGRGLTPM------MSDASSDLG--------GGRAGPVERDI 369 GRP +R R G D GRG PM D S G GGR G R++ Sbjct: 248 GRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNL 307 Query: 370 EQAITALKKGAYLLKYGRRGKP 435 +G L+ Y RRG+P Sbjct: 308 PLPPPPPPRGGDLMAYDRRGRP 329
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 30.4 bits (67), Expect = 2.0 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 16/82 (19%) Frame = +1 Query: 238 GRPWASGLRWRAGRDE--EGRGLTPM------MSDASSDLG--------GGRAGPVERDI 369 GRP +R R G D GRG PM D S G GGR G R++ Sbjct: 248 GRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNL 307 Query: 370 EQAITALKKGAYLLKYGRRGKP 435 +G L+ Y RRG+P Sbjct: 308 PLPPPPPPRGGDLMAYDRRGRP 329
>FLAA_HELMU (P50612) Flagellin A| Length = 494 Score = 30.0 bits (66), Expect = 2.6 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +1 Query: 277 RDEEGRGLTPMMSDASSDLGGGRAGPVERDIEQAITALKKGAYLLKYGR 423 R +GRG+ + +DAS D G G++ P+ D ++ G YGR Sbjct: 297 RSVDGRGIV-LKADASEDNGDGKSAPMAIDAVNGGQSITDGEGAANYGR 344
>ILVE_SALTY (P0A1A5) Branched-chain-amino-acid aminotransferase (EC 2.6.1.42)| (Transaminase B) (BCAT) Length = 308 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 298 LTPMMSDASSDLGGGRAGPVERDIEQAITALKKGAYLLKYG 420 +TP+ S +G GR GPV + I+QA L G K+G Sbjct: 261 ITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWG 301
>ILVE_SALTI (P0A1A6) Branched-chain-amino-acid aminotransferase (EC 2.6.1.42)| (Transaminase B) (BCAT) Length = 308 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 298 LTPMMSDASSDLGGGRAGPVERDIEQAITALKKGAYLLKYG 420 +TP+ S +G GR GPV + I+QA L G K+G Sbjct: 261 ITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWG 301
>ILVE_ECOLI (P0AB80) Branched-chain-amino-acid aminotransferase (EC 2.6.1.42)| (Transaminase B) (BCAT) Length = 308 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 298 LTPMMSDASSDLGGGRAGPVERDIEQAITALKKGAYLLKYG 420 +TP+ S +G GR GPV + I+QA L G K+G Sbjct: 261 ITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWG 301
>ILVE_ECOL6 (P0AB81) Branched-chain-amino-acid aminotransferase (EC 2.6.1.42)| (Transaminase B) (BCAT) Length = 308 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 298 LTPMMSDASSDLGGGRAGPVERDIEQAITALKKGAYLLKYG 420 +TP+ S +G GR GPV + I+QA L G K+G Sbjct: 261 ITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWG 301
>ILVE_ECO57 (P0AB82) Branched-chain-amino-acid aminotransferase (EC 2.6.1.42)| (Transaminase B) (BCAT) Length = 308 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 298 LTPMMSDASSDLGGGRAGPVERDIEQAITALKKGAYLLKYG 420 +TP+ S +G GR GPV + I+QA L G K+G Sbjct: 261 ITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWG 301
>NNP1_HUMAN (P56182) NNP-1 protein (Novel nuclear protein 1) (Nucleolar protein| Nop52) (D21S2056E) Length = 461 Score = 29.6 bits (65), Expect = 3.4 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = +1 Query: 154 PPTPAYPRRRACSSRRGTGWPPLARAALGRPWASGLRWRAGRDEEGRG 297 PP+P R+R S RRG G P ARA G + R GRG Sbjct: 381 PPSPGMERKR--SRRRGVGADPEARAEAGEQPGTAERALLRDQPRGRG 426
>ZN488_HUMAN (Q96MN9) Zinc finger protein 488| Length = 340 Score = 29.6 bits (65), Expect = 3.4 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = +1 Query: 262 RWRAGRDEEGRGLTPMMSDASSDLGG----GRAGPVERDIEQAITAL 390 RWR E GRG P++ + ++ LG GRAG RD+ A AL Sbjct: 33 RWRLSEPELGRGCKPVLLEKTNRLGPEAAVGRAG---RDVGSAELAL 76
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2161 Score = 29.3 bits (64), Expect = 4.4 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 3/56 (5%) Frame = +1 Query: 148 PFPPTPAYPRRRACSSRRGTGWPPLARAAL---GRPWASGLRWRAGRDEEGRGLTP 306 P PP P Y GT PP++R L P L W G DE + P Sbjct: 828 PVPPPPPYLANYPGFPENGTPGPPISRFPLEESAPPGPRPLPWPPGNDEAAKMQAP 883
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2158 Score = 29.3 bits (64), Expect = 4.4 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 3/56 (5%) Frame = +1 Query: 148 PFPPTPAYPRRRACSSRRGTGWPPLARAAL---GRPWASGLRWRAGRDEEGRGLTP 306 P PP P Y GT PP++R L P L W G DE + P Sbjct: 827 PVPPPPPYLANYPGFPENGTPGPPISRFPLEESAPPGPRPLPWPPGNDEAAKMQAP 882
>DEND_RAT (P50617) Dendrin| Length = 653 Score = 28.9 bits (63), Expect = 5.8 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 13/87 (14%) Frame = +1 Query: 172 PRRRACSSRRGTGWPPLARAALGRPWASGLRWRAGRDEEGRGLTPMMSDASSD------- 330 P+ R C R G+ PP R R WRAG E R A+S Sbjct: 12 PQNRTCRLRPGSPEPPPRRPWASRVLQEATNWRAGPPAEVRAREQEKRKAASQEREAKET 71 Query: 331 ------LGGGRAGPVERDIEQAITALK 393 GG R P+ + + AL+ Sbjct: 72 ERKRRKAGGARRSPLGQPRPELRNALR 98
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 28.9 bits (63), Expect = 5.8 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 165 RLPSPPGVLQPPRDGLAPIGAG 230 RLPS G+ PP+D +P+GAG Sbjct: 1050 RLPSDYGLKPPPQDDDSPVGAG 1071
>RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 28.9 bits (63), Expect = 5.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 147 PVPAYSRLPSPPGVLQPPRDGLAP 218 P PA + +P PP + PPR G+ P Sbjct: 70 PPPAGAMIPPPPSLPGPPRPGMMP 93
>RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 28.9 bits (63), Expect = 5.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 147 PVPAYSRLPSPPGVLQPPRDGLAP 218 P PA + +P PP + PPR G+ P Sbjct: 70 PPPAGAMIPPPPSLPGPPRPGMMP 93
>FBXL6_HUMAN (Q8N531) F-box/LRR-repeat protein 6 (F-box and leucine-rich repeat| protein 6) (F-box protein FBL6) (FBL6A) Length = 539 Score = 28.5 bits (62), Expect = 7.6 Identities = 22/68 (32%), Positives = 28/68 (41%) Frame = +1 Query: 157 PTPAYPRRRACSSRRGTGWPPLARAALGRPWASGLRWRAGRDEEGRGLTPMMSDASSDLG 336 P PA PR + +SRR PP +A +P A GLR A + D G Sbjct: 52 PGPARPRAQRRASRRTPRQPPRGPSAAAKPKA-GLRSEAAAAPAPAPAPTPTPEEGPDAG 110 Query: 337 GGRAGPVE 360 G P+E Sbjct: 111 WGDRIPLE 118
>DEND_MOUSE (Q80TS7) Dendrin| Length = 656 Score = 28.5 bits (62), Expect = 7.6 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 13/87 (14%) Frame = +1 Query: 172 PRRRACSSRRGTGWPPLARAALGRPWASGLRWRAGRDEEGRGLTPMMSDASSD------- 330 P+ R C R G+ PP R R WRAG E R A+S Sbjct: 12 PQSRTCRLRPGSPEPPPRRPWASRVLQEATNWRAGPPAEVRAREQEKRKAASQEREAKET 71 Query: 331 ------LGGGRAGPVERDIEQAITALK 393 GG R P+ + + AL+ Sbjct: 72 ERKRRKAGGARRSPLGQPRPEPRNALR 98
>SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific protease 3) Length = 574 Score = 28.1 bits (61), Expect = 9.9 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +1 Query: 139 AWIPFPPTPAYPRRRACSSRRGTGWPP 219 +W P PP P P + R G WPP Sbjct: 10 SWGPEPPGPGIPPAYSSPRRDGLRWPP 36
>YAJO_ECOLI (P77735) Hypothetical oxidoreductase yajO (EC 1.-.-.-)| Length = 324 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Frame = +1 Query: 211 WPPLARAALGRPWAS----------GLRWRAGRDEEGRGLTPMMSDASSDLGGGRA 348 W PLAR L RPW G DE + ++ S +LG RA Sbjct: 211 WSPLARGRLTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRA 266
>ZNF71_HUMAN (Q9NQZ8) Endothelial zinc finger protein induced by tumor necrosis| factor alpha (Zinc finger protein 71) (ZNF47) Length = 489 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/25 (56%), Positives = 14/25 (56%) Frame = -3 Query: 150 RDPGVEGVWEPGGRRRLASWREIER 76 R PG EGVWEPG SW E R Sbjct: 31 RGPGSEGVWEPG------SWPERPR 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,672,746 Number of Sequences: 219361 Number of extensions: 825482 Number of successful extensions: 3685 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3409 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3680 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
