Clone Information

BLAST Search Result

Clone Name	bastl44e06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	REXO4_CRYNE (Q5KJQ4) RNA exonuclease 4 (EC 3.1.-.-)	33	0.13
2	K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin...	32	0.28
3	MATK_HUMAN (P42679) Megakaryocyte-associated tyrosine-protein ki...	32	0.28
4	EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear a...	31	0.63
5	DDX3Y_PANTR (Q6GVM6) ATP-dependent RNA helicase DDX3Y (EC 3.6.1....	31	0.83
6	DDX3Y_HUMAN (O15523) ATP-dependent RNA helicase DDX3Y (EC 3.6.1....	30	1.1
7	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	30	1.4
8	NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3...	30	1.4
9	E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expresse...	30	1.4
10	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	30	1.4
11	NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 p...	30	1.4
12	CAP2_RAT (P52481) Adenylyl cyclase-associated protein 2 (CAP 2)	30	1.4
13	RSMB_XYLFA (Q9PEV0) Ribosomal RNA small subunit methyltransferas...	30	1.8
14	CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5....	30	1.8
15	PIWL2_MOUSE (Q8CDG1) Piwi-like protein 2	30	1.8
16	RSMB_XYLFT (Q87AR1) Ribosomal RNA small subunit methyltransferas...	30	1.8
17	FBRL_ASHGO (Q756P0) Fibrillarin	29	2.4
18	NFASC_RAT (P97685) Neurofascin precursor	29	2.4
19	NFASC_MOUSE (Q810U3) Neurofascin precursor	29	2.4
20	MRAW_DEHSC (Q3ZZA4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	29	2.4
21	CBIO2_STRAW (Q82B58) Putative cobalt import ATP-binding protein ...	29	2.4
22	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	28	4.1
23	CNTN1_CHICK (P14781) Contactin-1 precursor (Neural cell recognit...	28	4.1
24	PL10_MOUSE (P16381) Putative ATP-dependent RNA helicase Pl10 (EC...	28	4.1
25	NETR_GORGO (Q5G270) Neurotrypsin precursor (EC 3.4.21.-)	28	4.1
26	BAB1_DROME (Q9W0K7) Protein bric-a-brac 1	28	5.4
27	SPO15_SCHPO (Q10411) Sporulation-specific protein 15	28	5.4
28	MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p...	28	5.4
29	MATK_RAT (P41243) Megakaryocyte-associated tyrosine-protein kina...	28	5.4
30	DXS_SYNP7 (Q8GAA0) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2...	28	5.4
31	DXS_SYNLE (Q9R6S7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2...	28	5.4
32	MRAW_DEHE1 (Q3Z9L1) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	28	5.4
33	SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2	28	7.0
34	CLPX_HUMAN (O76031) ATP-dependent Clp protease ATP-binding subun...	28	7.0
35	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	28	7.0
36	ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII...	28	7.0
37	IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2	28	7.0
38	KARG_ANTJA (O15992) Arginine kinase (EC 2.7.3.3) (AK)	28	7.0
39	CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22	28	7.0
40	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	27	9.2
41	EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear ...	27	9.2
42	DDX3Y_PONPY (Q5RF43) ATP-dependent RNA helicase DDX3Y (EC 3.6.1....	27	9.2
43	CCA_XYLFT (Q87DS9) Multifunctional CCA protein [Includes: CCA-ad...	27	9.2
44	MPA91_POAPR (P22284) Pollen allergen KBG 31 precursor (Pollen al...	27	9.2
45	TACC3_HUMAN (Q9Y6A5) Transforming acidic coiled-coil-containing ...	27	9.2
46	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	27	9.2
47	AN3_XENLA (P24346) Putative ATP-dependent RNA helicase an3 (EC 3...	27	9.2
48	NFASC_HUMAN (O94856) Neurofascin precursor	27	9.2
49	CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro...	27	9.2
50	GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and bra...	27	9.2
51	CATA3_MAIZE (P18123) Catalase isozyme 3 (EC 1.11.1.6)	27	9.2
52	NUPL2_BRARE (Q6P0U9) Nucleoporin-like 2	27	9.2
53	GA2L1_MOUSE (Q8JZP9) GAS2-like protein 1 (Growth arrest-specific...	27	9.2
54	ATPBM_HEVBR (P29685) ATP synthase beta chain, mitochondrial prec...	27	9.2

>REXO4_CRYNE (Q5KJQ4) RNA exonuclease 4 (EC 3.1.-.-)|
          Length = 408

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 23/97 (23%)
 Frame = -2

Query: 233 PRHVVGRC-----ESRDARATARGPALRSTANRRGNFDSREE----------------IR 117
           P HV+G+      E+ D   TA G + R    + GN   R++                +R
Sbjct: 310 PEHVLGKRGHDEKEAEDGEETA-GESKRKNRKKSGNGGGRQQFPGGGRKGISSGLDVIVR 368

Query: 116 RNGSR--RAGFGSCVAARVSRGGEGNFFSGGYARWER 12
           RNG R    G G   + R +  GE + F+GG + WE+
Sbjct: 369 RNGQRVDENGRGDGTSRRKAGRGEISTFTGGESWWEQ 405

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>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3) (65 kDa cytokeratin)
          Length = 629

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -2

Query: 194 RATARGPALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSRGGEGNFFSGGY 27
           R+ A G   RS  N  GN      +   GSR  GFG   ++    GG G  F  GY
Sbjct: 46  RSGAGGFGSRSLYNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYGGGFGSGY 101

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>MATK_HUMAN (P42679) Megakaryocyte-associated tyrosine-protein kinase (EC|
           2.7.10.2) (Tyrosine-protein kinase CTK) (Protein kinase
           HYL) (Hematopoietic consensus tyrosine-lacking kinase)
          Length = 507

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 34  PLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGPLAVALASRDSH 213
           P +  P P    +++  E  PARR PFR+++        + A +LR+     +++ +D+ 
Sbjct: 445 PPEGCPGPVHVLMSSCWEAEPARRPPFRKLA-------EKLARELRSAGAPASVSGQDAD 497

Query: 214 RPTTCRGASP 243
             T+ R   P
Sbjct: 498 GSTSPRSQEP 507

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>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2)
          Length = 487

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +1

Query: 31  PPLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGPLAVAL 195
           PP    P PP+   A TQEP+P  RDP                 D+  GPLA A+
Sbjct: 91  PPPPPPPPPPQRRDAWTQEPSPLDRDP--------------LGYDVGHGPLASAM 131

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>DDX3Y_PANTR (Q6GVM6) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 660

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = -2

Query: 239 EAPRHVVGRCESRDARATARGPALRSTANR-RGNFDSREEIRRNGSRRAGFGSC--VAAR 69
           E P  +         +  +RG   RS +NR  G F +R+  + +GS  +GFG+    ++R
Sbjct: 564 EVPSWLENMAYEHQYKGGSRG---RSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSR 620

Query: 68  VSRGGEGN---FFSGGY 27
              GG GN   F  GGY
Sbjct: 621 SGGGGYGNSRGFGGGGY 637

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>DDX3Y_HUMAN (O15523) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 660

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = -2

Query: 167 RSTANR-RGNFDSREEIRRNGSRRAGFGSC--VAARVSRGGEGN---FFSGGY 27
           RS +NR  G F +R+  + +GS  +GFG+    ++R   GG GN   F  GGY
Sbjct: 585 RSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSRSGGGGYGNSRGFGGGGY 637

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +1

Query: 31  PPLKK--FPSPPRETLAATQEPNPARR-----DPFRRISSRESKFPRRFAVDLRAGPLAV 189
           PP+++   PSPP +   A+  P P RR      P RR+S       R   V  R  P   
Sbjct: 612 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP--- 668

Query: 190 ALASRDSHRPTTCRGASPTR 249
           +L+S+  HR    +G+SP+R
Sbjct: 669 SLSSK--HR----KGSSPSR 682

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>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1239

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = +2

Query: 80  HKSQIPPAEIRSVGFPPANRSFPVDSRSILGRGLSPSLSRR----------GIHTGRRHV 229
           H   +P   + S   PPA  +FPV   S++      SL ++          G H+ RR  
Sbjct: 250 HVWLVPNLALGSTDAPPA--AFPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYRRQY 307

Query: 230 EVLPLPAAGLRAKPSGRAP 286
             LP PA   R+ P   +P
Sbjct: 308 GTLPAPAGDCRSHPGPVSP 326

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>E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expressed protein 4.1)|
           (4.1G)
          Length = 988

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 195 ESDGERPRPKIDRESTGKLRFAGGNPTE 112
           E  G +P P ++R+ST +LR  G +P+E
Sbjct: 42  EEKGSQPGPPVERQSTPRLRKRGKDPSE 69

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +1

Query: 31  PPLKK--FPSPPRETLAATQEPNPARR-----DPFRRISSRESKFPRRFAVDLRAGPLAV 189
           PP+++   PSPP +   A+  P P RR      P RR+S       R   V  R  P   
Sbjct: 598 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP--- 654

Query: 190 ALASRDSHRPTTCRGASPTR 249
           +L+S+  HR    +G+SP+R
Sbjct: 655 SLSSK--HR----KGSSPSR 668

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>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1237

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = +2

Query: 80  HKSQIPPAEIRSVGFPPANRSFPVDSRSILGRGLSPSLSRR----------GIHTGRRHV 229
           H   +P   + S   PPA  +FPV   S++      SL ++          G H+ RR  
Sbjct: 250 HVWLVPNLALGSTDAPPA--AFPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYRRQY 307

Query: 230 EVLPLPAAGLRAKPSGRAP 286
             LP PA   R+ P   +P
Sbjct: 308 GTLPAPAGDCRSHPGPVSP 326

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>CAP2_RAT (P52481) Adenylyl cyclase-associated protein 2 (CAP 2)|
          Length = 477

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 31  PPLKKFPSPPRETLAATQEPNPARRDPFRRISSRE--SKFPRRFAVDLRAGPLAVALASR 204
           PP    P PP E     +EP+P+R   F +++  E  +K  R    D +        A  
Sbjct: 238 PPPPPGPPPPFENEGGKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKIYKNPSLRAQG 297

Query: 205 DSHRPTTCRGASPTRRRA 258
               PT  R  SPT  ++
Sbjct: 298 QIRSPTKTRTPSPTSSKS 315

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>RSMB_XYLFA (Q9PEV0) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 421

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 182 SPSLSRRGIHTGRRHVEVLPLPAAGLRAKPSGRAP 286
           +P   R  +  G RH  V  L AAGL A PSG  P
Sbjct: 159 APMWLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVP 193

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>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase|
           1) (Cyclophilin) (BmCYP-1)
          Length = 843

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 263 HVARRRVGEAPRHVVGRC-ESRDARATARGPALRSTANRRGNFDSREEIRRNGSRRA 96
           HV R  V E  RH V     S D + T R        +RRG  D +E++  NG + A
Sbjct: 410 HVTRHFVKEKNRHKVDEVGNSEDMKQTKR--------DRRGRADEKEKVEVNGEKAA 458

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>PIWL2_MOUSE (Q8CDG1) Piwi-like protein 2|
          Length = 971

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 125 PPANRSFPVDSRSILGRGLSPSLSRRGIHTGRRHVEVLPLPAAG 256
           PP+ R  P   R +LGRGLS ++ R+     R  +    + AAG
Sbjct: 84  PPSKREVPPLGRGVLGRGLSANMVRKDREEPRSSLPDPSVLAAG 127

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>RSMB_XYLFT (Q87AR1) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 431

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 182 SPSLSRRGIHTGRRHVEVLPLPAAGLRAKPSGRAP 286
           +P   R  +  G RH  V  L AAGL A PSG  P
Sbjct: 167 APMWLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVP 201

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>FBRL_ASHGO (Q756P0) Fibrillarin|
          Length = 326

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/60 (40%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -2

Query: 206 SRDARATARGPALRSTANRRGNFDSREEIRRNGSR--RAGFGSCVAARVSRGGEGNFFSG 33
           SR  R  ARG A       RG F       R GSR  R GF S   AR   GG G    G
Sbjct: 7   SRGGRGGARGGARGGARGGRGGFGG-----RGGSRGGRGGFDSRGGARGGFGGRGGSRGG 61

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>NFASC_RAT (P97685) Neurofascin precursor|
          Length = 1240

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 3   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSD 122
           P++ +  RV A  ++    P  PS   R    PP S PSD
Sbjct: 694 PYVNYQFRVIAVNEVGSSHPSLPSERYRTSGAPPESNPSD 733

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>NFASC_MOUSE (Q810U3) Neurofascin precursor|
          Length = 1240

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 3   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSD 122
           P++ +  RV A  ++    P  PS   R    PP S PSD
Sbjct: 694 PYVNYQFRVIAVNEVGSSHPSLPSERYRTSGAPPESNPSD 733

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>MRAW_DEHSC (Q3ZZA4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 349

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/47 (46%), Positives = 25/47 (53%)
 Frame = -2

Query: 176 PALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSRGGEGNFFS 36
           P+LR   NRR    S EEI RN   R+     VA R+   GEG FFS
Sbjct: 273 PSLR-IINRRVITPSDEEISRNPRSRSA-KMRVAERIIEPGEGRFFS 317

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>CBIO2_STRAW (Q82B58) Putative cobalt import ATP-binding protein cbiO 2|
          Length = 561

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 12  PFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSDFLP 131
           P P+  A A   P PSP  P R    + R P  VPS  LP
Sbjct: 276 PTPTATATATAAPAPSPSRPRRPRLLRKRAP--VPSAALP 313

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +1

Query: 31  PPLKK--FPSPPRETLAATQEPNPARR-----DPFRRISSRESKFPRRFAVDLRAGPLAV 189
           PP+++   PSPP +   A+  P P RR      P RR+S       R   V  R  P   
Sbjct: 617 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSP--- 673

Query: 190 ALASRDSHRPTTCRGASPTR 249
           +L+S+  HR    +G+SP R
Sbjct: 674 SLSSK--HR----KGSSPGR 687

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>CNTN1_CHICK (P14781) Contactin-1 precursor (Neural cell recognition molecule|
           F11)
          Length = 1010

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 3   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSD 122
           P++ +  R+ A   +    P  PS+  R +  PP   PSD
Sbjct: 664 PWMEYEFRIIATNTLGTGEPSMPSQRIRTEGAPPNVAPSD 703

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>PL10_MOUSE (P16381) Putative ATP-dependent RNA helicase Pl10 (EC 3.6.1.-)|
          Length = 660

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -2

Query: 200 DARATARGPALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSRGGEGNFFSGGYAR 21
           D RA +   + R  +  RG FD R         R+ + S V +R  R G G F  GG +R
Sbjct: 75  DTRAKSSFFSDRGGSGSRGRFDERG--------RSDYES-VGSRGGRSGFGKFERGGNSR 125

Query: 20  W 18
           W
Sbjct: 126 W 126

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>NETR_GORGO (Q5G270) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 876

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 48  PLPSP*NPSRHTRAKSRPPRSVPSDFLPRIEVSP 149
           P P P  PS +   + RPPR+ P   LPR    P
Sbjct: 37  PPPGPHYPSYYLPTQQRPPRTRPPPPLPRFPRPP 70

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>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1|
          Length = 977

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/71 (22%), Positives = 23/71 (32%)
 Frame = +3

Query: 42  KIPLPSP*NPSRHTRAKSRPPRSVPSDFLPRIEVSPSIXXXXXXXXXXXXXXVAGFTPAD 221
           ++PLP P +P  H      P ++  S   P      S               ++G  P  
Sbjct: 394 QLPLPLPLHPHHHASPAPHPSQTAGSAHHPASPAGDSRFPLGPAAAMAAARELSGLGPGP 453

Query: 222 DMSRCFPYPPP 254
                 P PPP
Sbjct: 454 SAEPRLPPPPP 464

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>SPO15_SCHPO (Q10411) Sporulation-specific protein 15|
          Length = 1957

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 204 PRRESDGERPRPKIDRESTGKLRFAGGNPTE 112
           P  +SD E PRP I R STG+L   G   ++
Sbjct: 29  PFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59

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>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/69 (30%), Positives = 25/69 (36%)
 Frame = +3

Query: 48   PLPSP*NPSRHTRAKSRPPRSVPSDFLPRIEVSPSIXXXXXXXXXXXXXXVAGFTPADDM 227
            P P P  P       + PPRS+PSD   R+ VSP                   F P+   
Sbjct: 2110 PRPQPPPPES---CCALPPRSLPSDPFSRVPVSPQSQSSSQSPLTPRPLSAEAFCPSPVT 2166

Query: 228  SRCFPYPPP 254
             R F  P P
Sbjct: 2167 PR-FQSPDP 2174

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>MATK_RAT (P41243) Megakaryocyte-associated tyrosine-protein kinase (EC|
           2.7.10.2) (Tyrosine-protein kinase CTK) (Protein kinase
           BATK)
          Length = 467

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 34  PLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAG 177
           P    P P    + +  E  P+RR PFR+I  +  +  R   V   AG
Sbjct: 405 PPDSCPGPVHTLMGSCWEAEPSRRPPFRKIVEKLGRELRSVGVAAPAG 452

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>DXS_SYNP7 (Q8GAA0) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 636

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 236 LPLPAAGLRAKPSGRAPRCRGGDDL 310
           +PLP  G  + P G+A + R GDDL
Sbjct: 483 VPLPEEGWESLPIGKAEQLRQGDDL 507

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>DXS_SYNLE (Q9R6S7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 636

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 236 LPLPAAGLRAKPSGRAPRCRGGDDL 310
           +PLP  G  + P G+A + R GDDL
Sbjct: 483 VPLPEEGWESLPIGKAEQLRQGDDL 507

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>MRAW_DEHE1 (Q3Z9L1) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 349

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/46 (45%), Positives = 25/46 (54%)
 Frame = -2

Query: 176 PALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSRGGEGNFF 39
           P+LR   NRR    S EEI RN   R+     VA R+ + GEG FF
Sbjct: 273 PSLR-LINRRVITPSDEEISRNPRSRSA-KMRVAERIIQPGEGRFF 316

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>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2|
          Length = 991

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = -2

Query: 143  NFDSREEIRRNGSRRA-----GFGSCVAARVSRGGEGNFFSGGYAR 21
            N    E IR  G+ R      G G   A R    G+G+F  GG+++
Sbjct: 910  NMTGHEHIRWRGAERGLAGGPGHGHVAAGRGGMAGQGSFAHGGHSQ 955

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>CLPX_HUMAN (O76031) ATP-dependent Clp protease ATP-binding subunit ClpX-like,|
           mitochondrial precursor
          Length = 633

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = -2

Query: 242 GEAPRHVVGRCESRDARATARGPALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVS 63
           G     V+GR  + + +   R P LRS       F S++ I ++GS      S       
Sbjct: 31  GRIHMSVLGRLGTFETQILQRAP-LRSFTETPAYFASKDGISKDGSGDGNKKSASEGSSK 89

Query: 62  RGGEGNFFSGG 30
           + G GN   GG
Sbjct: 90  KSGSGNSGKGG 100

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>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 3   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSDFLPRIEVSPS 152
           P  P PS  +     P P P +P+  + A S PP   P    P    SPS
Sbjct: 303 PTPPSPSPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPTPSPSPSPSPS 352

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>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3|
           (Elongin A3) (EloA3) (Transcription elongation factor B
           polypeptide 3C)
          Length = 546

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 54  PSP*NPSRHTRAKSRPPRSVPSDFLP 131
           P P +PSR  RA+ + PR  P+D  P
Sbjct: 142 PHPRSPSREPRAERKRPRMAPADSGP 167

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>IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2|
          Length = 1030

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 204 PRRESDGERPRPKIDR--ESTGKLRFAGGNP 118
           P R S+   PRPKI+R  E TG  R   G P
Sbjct: 202 PERTSEAPTPRPKIERRPEQTGPARPQLGQP 232

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>KARG_ANTJA (O15992) Arginine kinase (EC 2.7.3.3) (AK)|
          Length = 715

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 80  HKSQIPPAEIRSVGFPPANRSFPVD----SRSILGRGLSPSLSR 199
           H S + PA +++    PANR         +RS+ G GL+P +++
Sbjct: 103 HNSDMNPAHVKAPDLDPANRYIRSTRIRVARSLKGYGLAPGVTK 146

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>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = -1

Query: 315 P*RSSPPRQRGA----RPLGFARSPAAGRGSTSTCRRPV*IPRRESDGERPRPKIDREST 148
           P    PPR+ G+     PL  +RSP+  R  +         PRR  D     P  DRES 
Sbjct: 802 PRSGGPPRKAGSVDNRSPL--SRSPSGSRSPS---------PRRRRDSPSRSPVRDRESG 850

Query: 147 GKLRFAGGNPTE 112
           G+   A    +E
Sbjct: 851 GRAAAAAPGNSE 862

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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 134 SREEIRRNGSRRAGFGSCVAARVSRGGEGNFFSG 33
           SR+E++   S R+G G       SRGG GNF  G
Sbjct: 189 SRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 222

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>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2) (EBNA2)
          Length = 451

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = +1

Query: 1   TLFFRSHLA*PPLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGP 180
           T+F   +   PP    P PP+   A TQEP+P   DP                 D+  GP
Sbjct: 49  TIFVGENTGVPPPP--PPPPQRRDAWTQEPSPLDWDP--------------LGYDVGHGP 92

Query: 181 LAVAL 195
           LA A+
Sbjct: 93  LASAM 97

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>DDX3Y_PONPY (Q5RF43) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 658

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -2

Query: 146 GNFDSREEIRRNGSRRAGFGSCVAARVSRGGEG-----NFFSGGY 27
           G F +R+  + +GS  +GFG+   +    GG G      F  GGY
Sbjct: 591 GGFGARDYRQSSGSSSSGFGASRGSSSRSGGSGYGNSRGFGGGGY 635

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>CCA_XYLFT (Q87DS9) Multifunctional CCA protein [Includes: CCA-adding enzyme|
           (EC 2.7.7.25) (EC 2.7.7.21) (tRNA
           nucleotidyltransferase) (tRNA
           adenylyl-/cytidylyl-transferase) (tRNA
           CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase (EC
           3.1.3.-); 2',3'-cycli
          Length = 416

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 98  PAEIRSVGFPPANRSFPV 151
           PA ++S+GF P  R FPV
Sbjct: 31  PAHMKSLGFKPVGRDFPV 48

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>MPA91_POAPR (P22284) Pollen allergen KBG 31 precursor (Pollen allergen Poa p 9)|
           (Poa p IX)
          Length = 373

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 31  PPLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGPLAVA 192
           PP  KFP+ P   +AA     PA   P  + ++ E K   +  V  +A   A A
Sbjct: 92  PPASKFPAKPAPKVAAYTPAAPAGAAP--KATTDEQKLIEKINVGFKAAVAAAA 143

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>TACC3_HUMAN (Q9Y6A5) Transforming acidic coiled-coil-containing protein 3|
           (ERIC-1)
          Length = 838

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
 Frame = +1

Query: 34  PLKKFPSPPRETL---AATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGPLAVALASR 204
           P  +   P  E L    AT+EP P         S+ ++   +  A    A     AL S 
Sbjct: 435 PETRLGQPAAEQLHAGPATEEPGPCLSQQLHSASAEDTPVVQLAAETPTAESKERALNSA 494

Query: 205 DSHRPTTCRGASP 243
            +  PT+C G+ P
Sbjct: 495 STSLPTSCPGSEP 507

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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 134 SREEIRRNGSRRAGFGSCVAARVSRGGEGNFFSG 33
           SR+E++   S R+G G       SRGG GNF  G
Sbjct: 177 SRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 210

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>AN3_XENLA (P24346) Putative ATP-dependent RNA helicase an3 (EC 3.6.1.-)|
          Length = 697

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 239 EAPRHVVGRCESRDARATARGPALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSR 60
           E P  +      +  ++++RG   RS +   G F +++  R++    + FGS    R S 
Sbjct: 607 EVPSWLENMAYEQHHKSSSRG---RSKSRFSGGFGAKD-YRQSSGAGSSFGSSRGGRSSG 662

Query: 59  GGEGNFFSGGY 27
            G    F GGY
Sbjct: 663 HGGSRGFGGGY 673

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>NFASC_HUMAN (O94856) Neurofascin precursor|
          Length = 1347

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 3   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSD 122
           P++ +  RV A  ++    P  PS   R    PP S P D
Sbjct: 694 PYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPGD 733

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>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = -1

Query: 306  SSPPRQRGARPLGFARSPAAGRGSTSTCRRPV*IPRRESDGERPRPKIDRESTGKLRFAG 127
            + P    GA+P G   +   G+ S S  + P  +  R+S  E+P        TGK    G
Sbjct: 1161 TEPAADTGAQPKG---AEGNGKSSASKAKEPPFV--RKSALEQPE-------TGKAGADG 1208

Query: 126  GNPTERISA 100
            G PT+R ++
Sbjct: 1209 GTPTDRYNS 1217

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>GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and brain-specific|
           homeobox protein 1)
          Length = 418

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +1

Query: 31  PPLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGP 180
           PP +  P PP E  +A  EP+ A   P R +  R    P   A   R GP
Sbjct: 10  PPAR--PLPPYERESAAPEPHCAEPAPRRHLGPRARSEPCVSARGARRGP 57

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>CATA3_MAIZE (P18123) Catalase isozyme 3 (EC 1.11.1.6)|
          Length = 496

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = -1

Query: 315 P*RSSPPRQRGARPLGFARSPAAGRGSTSTCRRPV*IPRRESDGERPRP-KIDRESTGKL 139
           P R +P RQ  A P      P AGR   +T R+P      +  GER R    DR+     
Sbjct: 397 PSRHAPLRQ-AAPPTPLPPRPVAGRREKATIRKP---NDFKQPGERYRSWDADRQDRFVR 452

Query: 138 RFAG--GNPTERISAGGIWL 85
           RFA   G+P        IW+
Sbjct: 453 RFADSLGHPKVSQELRSIWI 472

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>NUPL2_BRARE (Q6P0U9) Nucleoporin-like 2|
          Length = 414

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 161 TANRRGNFDSREEIRRNGSRRAGFGSCVAARVS-RGGEGNFFSGGYARWER 12
           T  R G++   ++     S R GFG+ V    S RGG G+  +GG   W R
Sbjct: 24  TGGRGGDYRGNQQ----PSNRGGFGNRVWINPSQRGGGGSSSAGGSNEWGR 70

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>GA2L1_MOUSE (Q8JZP9) GAS2-like protein 1 (Growth arrest-specific 2-like 1)|
          Length = 678

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 202 RDSHRPTTCRGASPTRRRA 258
           R SHRPT+C  ASP R  A
Sbjct: 382 RPSHRPTSCLPASPRRPTA 400

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>ATPBM_HEVBR (P29685) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 562

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 306 SSPPRQRGARPLGFARSPAAGRGSTSTCRRPV*IPRRESDGERPRPKIDRESTGK 142
           SSP  +  A P G+  + AA   +++    P   P  + +G +   KI  E TGK
Sbjct: 34  SSPSSKSRASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGK 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,056,279
Number of Sequences: 219361
Number of extensions: 1258660
Number of successful extensions: 4244
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4229
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result