ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44e06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 224 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 276 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 7450210 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 7450262 Score = 85.7 bits (43), Expect = 1e-13 Identities = 69/75 (92%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 304 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 363 ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct: 7450290 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 7450347 Query: 364 tcttgcctgttggtt 378 ||||||||||||||| Sbjct: 7450348 tcttgcctgttggtt 7450362
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 224 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 276 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 88765 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 88817 Score = 85.7 bits (43), Expect = 1e-13 Identities = 69/75 (92%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 304 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 363 ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct: 88845 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 88902 Query: 364 tcttgcctgttggtt 378 ||||||||||||||| Sbjct: 88903 tcttgcctgttggtt 88917
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 224 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 276 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 7448045 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 7448097 Score = 85.7 bits (43), Expect = 1e-13 Identities = 69/75 (92%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 304 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 363 ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct: 7448125 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 7448182 Query: 364 tcttgcctgttggtt 378 ||||||||||||||| Sbjct: 7448183 tcttgcctgttggtt 7448197
>dbj|AK072703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135J11, full insert sequence Length = 1125 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 224 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 276 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 233 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 285 Score = 85.7 bits (43), Expect = 1e-13 Identities = 69/75 (92%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 304 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 363 ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct: 313 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 370 Query: 364 tcttgcctgttggtt 378 ||||||||||||||| Sbjct: 371 tcttgcctgttggtt 385
>dbj|AK064767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A02, full insert sequence Length = 2755 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 224 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 276 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 236 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 288 Score = 85.7 bits (43), Expect = 1e-13 Identities = 69/75 (92%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 304 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 363 ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct: 316 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 373 Query: 364 tcttgcctgttggtt 378 ||||||||||||||| Sbjct: 374 tcttgcctgttggtt 388
>dbj|AK062662.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F06, full insert sequence Length = 732 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 224 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 276 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 234 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 286 Score = 85.7 bits (43), Expect = 1e-13 Identities = 69/75 (92%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 304 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 363 ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct: 314 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 371 Query: 364 tcttgcctgttggtt 378 ||||||||||||||| Sbjct: 372 tcttgcctgttggtt 386
>gb|DQ060243.1| Zea mays stress inducible protein coi6.1 gene, complete cds Length = 3418 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 224 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtggccgtg 281 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 662 catgtcgaggtgcttcccctacccgccaccggggtacgtgcggaacccagtggccgtg 719 Score = 60.0 bits (30), Expect = 5e-06 Identities = 46/50 (92%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 299 ggagacgacctctaaggtttgttgaaccatcggatttacaacacgcacgt 348 |||| ||||| ||||||||||||||||| |||||||||| |||||||||| Sbjct: 728 ggagtcgaccgctaaggtttgttgaaccttcggatttac-acacgcacgt 776 Score = 40.1 bits (20), Expect = 5.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 64 gaaaccctagccgccacacaagagccaaatcccgcc 99 ||||||||||||||||| | | | |||||||||||| Sbjct: 521 gaaaccctagccgccacgccaaaaccaaatcccgcc 556
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 tgcttcccctacccgccgccg 254 ||||||||||||||||||||| Sbjct: 161605 tgcttcccctacccgccgccg 161625
>gb|AC126804.3| Mus musculus BAC clone RP23-3F1 from 9, complete sequence Length = 223991 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 ttcccctcccctccccgtgaa 66 ||||||||||||||||||||| Sbjct: 96697 ttcccctcccctccccgtgaa 96677
>ref|XM_467551.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1009 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 cctctcgccgtcgctctcgcgtcg 201 |||||||||| ||||||||||||| Sbjct: 758 cctctcgccgacgctctcgcgtcg 781
>gb|AC123052.4| Mus musculus chromosome 13 clone RP24-373D10, complete sequence Length = 175595 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aaaattcccctcccctcccc 61 |||||||||||||||||||| Sbjct: 43362 aaaattcccctcccctcccc 43381
>emb|AJ810720.1| Hydrobius fuscipes partial 18S rRNA gene Length = 1910 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccgtcgctctcgcgtcgcgg 204 |||||||||||||||||||| Sbjct: 1442 ccgtcgctctcgcgtcgcgg 1461
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 cctctcgccgtcgctctcgcgtcg 201 |||||||||| ||||||||||||| Sbjct: 30117916 cctctcgccgacgctctcgcgtcg 30117893
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 cctctcgccgtcgctctcgcgtcg 201 |||||||||| ||||||||||||| Sbjct: 97513 cctctcgccgacgctctcgcgtcg 97490
>dbj|AK107565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C07, full insert sequence Length = 1009 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 cctctcgccgtcgctctcgcgtcg 201 |||||||||| ||||||||||||| Sbjct: 758 cctctcgccgacgctctcgcgtcg 781
>gb|AY745585.1| Ametor scabrosus 18S ribosomal RNA gene, partial sequence Length = 1844 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccgtcgctctcgcgtcgcgg 204 |||||||||||||||||||| Sbjct: 1422 ccgtcgctctcgcgtcgcgg 1441 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,283,010 Number of Sequences: 3902068 Number of extensions: 2283010 Number of successful extensions: 114275 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114116 Number of HSP's gapped (non-prelim): 153 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
