>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 17  IPASGEAPSFITALSPPPQNLSRPREISGPRWSRPPDLGFPRDA 148
           +P +G  P  +  +   P+N   P+  +GP +  PP  GFPR+A
Sbjct: 450 VPFNGPNPQQMNPMGGMPKNGMPPQFRNGPVYGVPPQGGFPRNA 493

>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 2.8) (OsPIP2.8)
          Length = 280

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  VVHHSTLPSSPKPLAPARDFGPALV*ATGS 129
           VVH +T+P +   + PAR  GPALV   G+
Sbjct: 204 VVHLATIPITGTGINPARSLGPALVLGLGT 233

>ITS3_SCHPO (O13853) Phosphatidylinositol-4-phosphate 5-kinase its3 (EC|
           2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase)
           (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide
           kinase)
          Length = 742

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 5   RNSPIPASGEAPSFITALSPPPQNLSRPREISGPRWSRPP 124
           R+SPI ++ E PS  ++ SP  QNL    ++S P+ SR P
Sbjct: 118 RDSPIVSALEPPSSNSSSSPQLQNLK--HQLSSPQPSRAP 155

>DAB2_MOUSE (P98078) Disabled homolog 2 (DOC-2) (Mitogen-responsive|
           phosphoprotein)
          Length = 766

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 32  EAPSFITALSPPPQNLSRPREISGPR-WSRPPDLGFP 139
           ++PSF T  SPPP  +  P     P  WS    LG P
Sbjct: 552 QSPSFATPASPPPPTVWCPTTSVAPNAWSSTSPLGNP 588

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +2

Query: 20  PASGEAPSFIT----ALSPPPQNLSRPREIS--GPRWSRPPDLG 133
           P SGEAPS++T     LS  P+  ++ RE+     RW+    LG
Sbjct: 59  PFSGEAPSYLTGEFHGLSADPETFAKNRELEVIHSRWAMLGALG 102

>GLGA_RALSO (Q8XT73) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 541

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 254 WPLGS--RPRAAADTEPYVVPAAHRRRRQVACVATQREH 144
           WP+ +  RP +  DT P   PA  RRRR  A   T R H
Sbjct: 492 WPMRTLARPASPPDTAPVGKPA--RRRRTTALSTTARAH 528

>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +2

Query: 20  PASGEAPSFITALSPPPQNLSRPREISGPRWSRPPDLGFP 139
           P  G  P       P P N SRP  + GP    P   G P
Sbjct: 230 PGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVP 269

>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1|
          Length = 657

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  SPPPQNLSRPREISGPRWSRPPDLG 133
           SP    + RP  +SGP W +PP  G
Sbjct: 54  SPTSGPVGRPGGVSGPSWLQPPGTG 78

>VE2_HPV41 (P27552) Regulatory protein E2|
          Length = 387

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 251 PLGSRPRAAADTEPYVVPAAHRRRRQVACVATQREHRAETLDPVA*TNAG 102
           P GSR R   +T   V PA  RRR      ++ +  R     PV+  N G
Sbjct: 222 PQGSRRRRNEETGEPVAPAPKRRRGAYGRRSSPKAQRRTAASPVSRGNGG 271

>ARHGB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (PDZ-RhoGEF)|
          Length = 1522

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 5   RNSPIPASGEAPSFITALSPPPQNLSRPREISGPRWSRPPDL 130
           +  P PA     + +    PPP  L  P+ I+GP+  + P++
Sbjct: 133 QQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGPKPLQDPEV 174

>GGA3_MOUSE (Q8BMI3) ADP-ribosylation factor-binding protein GGA3|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 3)
          Length = 718

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +2

Query: 20  PASGEAPSFITALSPPPQNLSRPREISGPRWSRPPDLGFPRDAL 151
           PA     S I  L PPPQ    PR  S  +   PP      +AL
Sbjct: 340 PALAPPTSGIPILPPPPQTSGPPRSRSSSQAEAPPGSDSTNNAL 383

>PMGE_HUMAN (P07738) Bisphosphoglycerate mutase (EC 5.4.2.4)|
           (2,3-bisphosphoglycerate mutase, erythrocyte)
           (2,3-bisphosphoglycerate synthase) (BPGM) (EC 5.4.2.1)
           (EC 3.1.3.13) (BPG-dependent PGAM)
          Length = 258

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 287 HRGQQESRRWRWPLGSRPRAAADTEPYVVPAAHRRRRQVACVATQREHRAETLDPV 120
           + G+++ R WR      P    ++ PY     + RR +V  V   +  R+E+L  V
Sbjct: 105 NHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDV 160

>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 11  SPIPASGEAPSFITALSPPPQNLSRPREI--SGPRWSRPPDLGFPRDA 148
           SP PAS   P F    S PP+  S    +    P W+ P  + FP  A
Sbjct: 660 SPSPASPLTPPFSPTFSRPPRLASPYGSLRQHPPPWAAPAHVPFPPQA 707

>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane|
            protein)
          Length = 2038

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 147  ASRGNPRSGGLDQRGPEISRGRERFWGGGESAVMNDGASPLAGIG 13
            AS G P SGG          G     GGG  A++N G++  +G+G
Sbjct: 1830 ASAGGPNSGGGGTANSNSGGGG----GGGGPALLNAGSNSNSGVG 1870


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,394,699
Number of Sequences: 219361
Number of extensions: 730873
Number of successful extensions: 3404
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3379
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)