>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 160   gcgacgcacgccacctggcggcgccggc 187
             ||||||| ||||||||||||||||||||
Sbjct: 81976 gcgacgcgcgccacctggcggcgccggc 82003

>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 160   gcgacgcacgccacctggcggcgccggc 187
             ||||||| ||||||||||||||||||||
Sbjct: 18459 gcgacgcgcgccacctggcggcgccggc 18486

>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 160   gcgacgcacgccacctggcggcgccggc 187
             ||||||| ||||||||||||||||||||
Sbjct: 82034 gcgacgcgcgccacctggcggcgccggc 82061

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 176    ggcggcgccggcggtgcgcggcgg 199
              ||||||||||||||||||||||||
Sbjct: 663592 ggcggcgccggcggtgcgcggcgg 663569



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     ggcggcgccggcggtgcgcg 195
               ||||||||||||||||||||
Sbjct: 2856875 ggcggcgccggcggtgcgcg 2856856



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    cggtgcgcggcggggacgac 206
              ||||||||||||||||||||
Sbjct: 109643 cggtgcgcggcggggacgac 109662

>gb|AC158763.6| Mus musculus chromosome 18, clone RP23-343L17, complete sequence
          Length = 204022

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 55    actctcccctcctccccaaaac 76
             ||||||||||||||||||||||
Sbjct: 85896 actctcccctcctccccaaaac 85917

>dbj|AK169985.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630006L19
           product:unclassifiable, full insert sequence
          Length = 2620

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 55  actctcccctcctccccaaaac 76
           ||||||||||||||||||||||
Sbjct: 655 actctcccctcctccccaaaac 676

>dbj|AK079263.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
          enriched library, clone:9530065A06
          product:unclassifiable, full insert sequence
          Length = 2816

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 55 actctcccctcctccccaaaac 76
          ||||||||||||||||||||||
Sbjct: 76 actctcccctcctccccaaaac 97

>dbj|AK053330.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130010B03 product:unclassifiable, full
           insert sequence
          Length = 2570

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 55  actctcccctcctccccaaaac 76
           ||||||||||||||||||||||
Sbjct: 641 actctcccctcctccccaaaac 662

>ref|XM_470350.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1434

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 176 ggcggcgccggcggtgcgcggcggg 200
           |||||||||||||| ||||||||||
Sbjct: 423 ggcggcgccggcggcgcgcggcggg 399

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 176      ggcggcgccggcggtgcgcggcggg 200
                |||||||||||||| ||||||||||
Sbjct: 34895219 ggcggcgccggcggcgcgcggcggg 34895195



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      cctccccaaaacctctcgcg 84
               ||||||||||||||||||||
Sbjct: 9959162 cctccccaaaacctctcgcg 9959181

>gb|AY859184.1| Pseudomonas viridiflava strain SP8.1a AvrE (avrE) gene, complete cds
          Length = 5305

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cggtgtcagcggcagcgcggg 235
            |||||||||||||||||||||
Sbjct: 3739 cggtgtcagcggcagcgcggg 3759

>gb|AY859183.1| Pseudomonas viridiflava strain SP5.3c AvrE (avrE) gene, complete cds
          Length = 5305

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cggtgtcagcggcagcgcggg 235
            |||||||||||||||||||||
Sbjct: 3739 cggtgtcagcggcagcgcggg 3759

>gb|AY859115.1| Pseudomonas viridiflava strain DUS2.2a AvrE (avrE) gene, complete cds
          Length = 5311

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cggtgtcagcggcagcgcggg 235
            |||||||||||||||||||||
Sbjct: 3745 cggtgtcagcggcagcgcggg 3765

>gb|AY859112.1| Pseudomonas viridiflava strain DUD4.5a AvrE (avrE) gene, complete cds
          Length = 5311

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cggtgtcagcggcagcgcggg 235
            |||||||||||||||||||||
Sbjct: 3745 cggtgtcagcggcagcgcggg 3765

>gb|AY859111.1| Pseudomonas viridiflava strain DUD2.5a AvrE (avrE) gene, complete cds
          Length = 5311

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cggtgtcagcggcagcgcggg 235
            |||||||||||||||||||||
Sbjct: 3745 cggtgtcagcggcagcgcggg 3765

>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39281

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   cggtgtcagcggcagcgcggg 235
             |||||||||||||||||||||
Sbjct: 22143 cggtgtcagcggcagcgcggg 22163

>gb|AY597282.1| Pseudomonas viridiflava strain RMX23.1a pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39285

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   cggtgtcagcggcagcgcggg 235
             |||||||||||||||||||||
Sbjct: 21696 cggtgtcagcggcagcgcggg 21716

>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39776

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   cggtgtcagcggcagcgcggg 235
             |||||||||||||||||||||
Sbjct: 22200 cggtgtcagcggcagcgcggg 22220

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 176      ggcggcgccggcggtgcgcggcggg 200
                |||||||||||||| ||||||||||
Sbjct: 34985291 ggcggcgccggcggcgcgcggcggg 34985267



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      cctccccaaaacctctcgcg 84
               ||||||||||||||||||||
Sbjct: 9957283 cctccccaaaacctctcgcg 9957302

>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
              sequence
          Length = 171376

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 176    ggcggcgccggcggtgcgcggcggg 200
              |||||||||||||| ||||||||||
Sbjct: 120261 ggcggcgccggcggcgcgcggcggg 120285

>gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, complete sequence
          Length = 207418

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   cctgctgccccctgtgtcct 291
             ||||||||||||||||||||
Sbjct: 79557 cctgctgccccctgtgtcct 79576

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     tcggtgttaatgaagaggac 335
               ||||||||||||||||||||
Sbjct: 2960579 tcggtgttaatgaagaggac 2960598

>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone
            OSJNBb0027B12, from chromosome 3, complete sequence
          Length = 127426

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   cctccccaaaacctctcgcg 84
            ||||||||||||||||||||
Sbjct: 9078 cctccccaaaacctctcgcg 9097

>gb|AY859131.1| Pseudomonas viridiflava strain KY2.1e AvrE (avrE) gene, complete cds
          Length = 5311

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  ggtgtcagcggcagcgcggg 235
            ||||||||||||||||||||
Sbjct: 3746 ggtgtcagcggcagcgcggg 3765

>emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on chromosome 9 Contains the 5'
              end of the PAX5 gene for paired box gene 5 (B-cell lineage
              specific activator protein) (BSAP), a ribosomal protein L32
              (RPL32) pseudogene and five CpG islands, complete sequence
          Length = 159096

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tcccctcctccccaaaacct 78
              ||||||||||||||||||||
Sbjct: 108193 tcccctcctccccaaaacct 108212

>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ggcgccggcggtgcgcggcg 198
             ||||||||||||||||||||
Sbjct: 88138 ggcgccggcggtgcgcggcg 88157

>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ggcgccggcggtgcgcggcg 198
             ||||||||||||||||||||
Sbjct: 11181 ggcgccggcggtgcgcggcg 11200

>ref|NM_141691.1| Drosophila melanogaster CG8500-RA (CG8500), mRNA
          Length = 3412

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ggggccagcgccagcggcgg 267
           ||||||||||||||||||||
Sbjct: 885 ggggccagcgccagcggcgg 904

>gb|AC007431.8| Homo sapiens chromosome 17, clone RP11-118E18, complete sequence
          Length = 166518

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    tccccaatccccgcaagtggagag 34
             |||||| |||||||||||||||||
Sbjct: 70352 tccccactccccgcaagtggagag 70375

>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 247     aggggccagcgccagcggcg 266
               ||||||||||||||||||||
Sbjct: 1939701 aggggccagcgccagcggcg 1939720

>gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone
             BACR23O04, complete sequence
          Length = 160817

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ggggccagcgccagcggcgg 267
             ||||||||||||||||||||
Sbjct: 61398 ggggccagcgccagcggcgg 61417

>gb|AC008315.9|AC008315 Drosophila melanogaster, chromosome 3R, region 85E-85E, BAC clone
              BACR30F01, complete sequence
          Length = 177028

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    ggggccagcgccagcggcgg 267
              ||||||||||||||||||||
Sbjct: 168551 ggggccagcgccagcggcgg 168570

>gb|BT024201.1| Drosophila melanogaster RE46661 full insert cDNA
          Length = 3408

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ggggccagcgccagcggcgg 267
           ||||||||||||||||||||
Sbjct: 883 ggggccagcgccagcggcgg 902

>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0022M22, from chromosome 3, complete sequence
          Length = 124166

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     cctccccaaaacctctcgcg 84
              ||||||||||||||||||||
Sbjct: 121551 cctccccaaaacctctcgcg 121570

>emb|AJ271460.1|CRE271460 Chlamydomonas reinhardtii mRNA for chloroplast TPR protein (nac2
            gene)
          Length = 5034

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  ggcgccggcggtgcgcggcg 198
            ||||||||||||||||||||
Sbjct: 3923 ggcgccggcggtgcgcggcg 3942

>gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22 of 118 of the
             complete sequence
          Length = 214323

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ggggccagcgccagcggcgg 267
             ||||||||||||||||||||
Sbjct: 81121 ggggccagcgccagcggcgg 81140

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 261     gcggcggctttcctgctgcc 280
               ||||||||||||||||||||
Sbjct: 1685918 gcggcggctttcctgctgcc 1685937


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,295,141
Number of Sequences: 3902068
Number of extensions: 2295141
Number of successful extensions: 64650
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63722
Number of HSP's gapped (non-prelim): 928
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)