Clone Name | bastl44d09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478729.1| Oryza sativa (japonica cultivar-group), mRNA Length = 972 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 4 agaagcagcagcagcagctcagccgc 29
>ref|XM_507374.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 995 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 28 agaagcagcagcagcagctcagccgc 53
>ref|XM_507373.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1007 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 28 agaagcagcagcagcagctcagccgc 53
>ref|XM_507372.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1108 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 30 agaagcagcagcagcagctcagccgc 55
>ref|XM_507371.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1000 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>ref|XM_507370.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1012 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>ref|XM_507369.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1032 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 35 agaagcagcagcagcagctcagccgc 60
>ref|XM_506410.2| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1159 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 68 agaagcagcagcagcagctcagccgc 93
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 22433889 agaagcagcagcagcagctcagccgc 22433914
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 94956 agaagcagcagcagcagctcagccgc 94981
>dbj|AK109399.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C08, full insert sequence Length = 1111 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>dbj|AK119545.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G05, full insert sequence Length = 1012 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>dbj|AK119533.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F03, full insert sequence Length = 1000 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>dbj|AK104495.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C03, full insert sequence Length = 973 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 4 agaagcagcagcagcagctcagccgc 29
>dbj|AK104465.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C07, full insert sequence Length = 1012 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>dbj|AK104224.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E11, full insert sequence Length = 995 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 28 agaagcagcagcagcagctcagccgc 53
>dbj|AK103999.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D10, full insert sequence Length = 1007 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 28 agaagcagcagcagcagctcagccgc 53
>dbj|AK103926.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D02, full insert sequence Length = 1000 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>dbj|AK068972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001G03, full insert sequence Length = 1107 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 29 agaagcagcagcagcagctcagccgc 54
>dbj|AK061512.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G12, full insert sequence Length = 1032 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 35 agaagcagcagcagcagctcagccgc 60
>dbj|AK058312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H12, full insert sequence Length = 1040 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctcagccgc 311 |||||||||||| ||||||||||||| Sbjct: 33 agaagcagcagcagcagctcagccgc 58
>ref|XM_958081.1| Neurospora crassa OR74A hypothetical protein (NCU09596.1) partial mRNA Length = 1011 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 agcagcagcggcagctcagcc 309 ||||||||||||||||||||| Sbjct: 122 agcagcagcggcagctcagcc 142
>ref|XM_330245.1| Neurospora crassa OR74A hypothetical protein (NCU09596.1) partial mRNA Length = 1011 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 agcagcagcggcagctcagcc 309 ||||||||||||||||||||| Sbjct: 122 agcagcagcggcagctcagcc 142
>emb|BX284745.1|NCB18E6 Neurospora crassa DNA linkage group II BAC clone B18E6 Length = 68593 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 agcagcagcggcagctcagcc 309 ||||||||||||||||||||| Sbjct: 49389 agcagcagcggcagctcagcc 49409
>ref|NM_121206.2| Arabidopsis thaliana unknown protein AT5G11680 mRNA, complete cds Length = 1035 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 642 agaagcagcagcggcagctc 661
>gb|DQ226595.1| Boechera divaricarpa isolate SLW-3-C04 mRNA sequence Length = 165 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 80 agaagcagcagcggcagctc 61
>emb|CR376748.8| Zebrafish DNA sequence from clone DKEY-7I1 in linkage group 23, complete sequence Length = 233351 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gtagaagcagcagcggcagc 303 |||||||||||||||||||| Sbjct: 83369 gtagaagcagcagcggcagc 83350
>ref|XM_799323.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507223.20) partial mRNA Length = 2490 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gtagaagcagcagcggcagc 303 |||||||||||||||||||| Sbjct: 1127 gtagaagcagcagcggcagc 1108
>ref|XM_799649.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504635.20) partial mRNA Length = 2490 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gtagaagcagcagcggcagc 303 |||||||||||||||||||| Sbjct: 1127 gtagaagcagcagcggcagc 1108
>ref|XM_800299.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053457101.10) partial mRNA Length = 2490 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gtagaagcagcagcggcagc 303 |||||||||||||||||||| Sbjct: 1127 gtagaagcagcagcggcagc 1108
>ref|XM_800563.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507079.10) partial mRNA Length = 2490 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gtagaagcagcagcggcagc 303 |||||||||||||||||||| Sbjct: 1127 gtagaagcagcagcggcagc 1108
>gb|AY117201.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds Length = 631 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 444 agaagcagcagcggcagctc 463
>gb|AY063800.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds Length = 845 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 642 agaagcagcagcggcagctc 661
>emb|AL662948.4|OSJN00150 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060B20, complete sequence Length = 147254 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 tggggaggggagccgtcgcg 234 |||||||||||||||||||| Sbjct: 76330 tggggaggggagccgtcgcg 76311
>emb|AL163814.1|ATT22P22 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project) Length = 93205 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 39339 agaagcagcagcggcagctc 39358
>gb|AY081610.1| Arabidopsis thaliana putative protein (At5g11680) mRNA, complete cds Length = 783 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 444 agaagcagcagcggcagctc 463
>gb|AY062861.1| Arabidopsis thaliana putative protein (At5g11680; T22P22_70) mRNA, complete cds Length = 1015 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 631 agaagcagcagcggcagctc 650
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 tggggaggggagccgtcgcg 234 |||||||||||||||||||| Sbjct: 7870633 tggggaggggagccgtcgcg 7870614
>emb|BX833959.1|CNS09Z62 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL86ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 972 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 575 agaagcagcagcggcagctc 594
>emb|BX833543.1|CNS09Z3S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZD03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 901 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 518 agaagcagcagcggcagctc 537
>gb|AY088005.1| Arabidopsis thaliana clone 403 mRNA, complete sequence Length = 1001 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 611 agaagcagcagcggcagctc 630
>emb|AL691462.12| Mouse DNA sequence from clone RP23-267F7 on chromosome 2, complete sequence Length = 61310 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agaagcagcagcggcagctc 305 |||||||||||||||||||| Sbjct: 25304 agaagcagcagcggcagctc 25323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,075,455 Number of Sequences: 3902068 Number of extensions: 1075455 Number of successful extensions: 29434 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29366 Number of HSP's gapped (non-prelim): 68 length of query: 344 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 322 effective length of database: 17,147,199,772 effective search space: 5521398326584 effective search space used: 5521398326584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)