>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score =  124 bits (311), Expect = 1e-28
 Identities = 60/71 (84%), Positives = 61/71 (85%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           LY ELWHACAGPLVTVPR  D VFYFPQGHIEQVEAS NQ A  QM LYDLP KLLCRVI
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117

Query: 408 NVELKAEADTD 440
           NV+LKAEADTD
Sbjct: 118 NVDLKAEADTD 128

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score =  100 bits (249), Expect = 2e-21
 Identities = 44/73 (60%), Positives = 59/73 (80%)
 Frame = +3

Query: 222 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCR 401
           D L  ELWHACAGPLVT+PR G+ V+YFP+GH+EQ+EASM+Q    QM  ++LP K+LC+
Sbjct: 17  DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 76

Query: 402 VINVELKAEADTD 440
           VIN++ +AE +TD
Sbjct: 77  VINIQRRAEPETD 89

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +3

Query: 213 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPXK 389
           S  D LY ELW ACAGPLV VPR G+ VFYFPQGH+EQ+ AS NQ V   ++ +++LP K
Sbjct: 13  SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPK 72

Query: 390 LLCRVINVELKAEADTD 440
           +LCRV++V LKAE +TD
Sbjct: 73  ILCRVLSVTLKAEHETD 89

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score = 94.7 bits (234), Expect = 9e-20
 Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
 Frame = +3

Query: 219 GDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMR-LYDLPXKLL 395
           G+ LYDELW  CAGPLV VP+  + V+YFPQGH+EQ+EAS  QV  N M+ L+ LP K+L
Sbjct: 6   GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

Query: 396 CRVINVELKAEADTD 440
           C V+NV L+AE DTD
Sbjct: 66  CNVMNVSLQAEKDTD 80

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +3

Query: 222 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPXKLLC 398
           D LY ELW  CAGPLV VPR  + VFYFPQGH+EQ+ AS NQ +   ++ ++DLP K+LC
Sbjct: 20  DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILC 79

Query: 399 RVINVELKAEADTD 440
           RV++V LKAE +TD
Sbjct: 80  RVLDVTLKAEHETD 93

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 35/71 (49%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +       + D P KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVI 83

Query: 408 NVELKAEADTD 440
            ++LK E ++D
Sbjct: 84  AIQLKVENNSD 94

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 35/71 (49%), Positives = 48/71 (67%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VE S  +       + DLP KL CRVI
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVI 83

Query: 408 NVELKAEADTD 440
            + LK E ++D
Sbjct: 84  AIHLKVENNSD 94

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 36/71 (50%), Positives = 48/71 (67%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +         DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVI 83

Query: 408 NVELKAEADTD 440
            + LK E ++D
Sbjct: 84  AIHLKVENNSD 94

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 34/71 (47%), Positives = 50/71 (70%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW  CAGPL  +P++G+ ++YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVI 83

Query: 408 NVELKAEADTD 440
            ++LK E ++D
Sbjct: 84  AIQLKVENNSD 94

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 38/72 (52%), Positives = 49/72 (68%)
 Frame = +3

Query: 225 PLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRV 404
           P+  +LWHACAGPLV++P VG LV YFPQGH EQV ASM +         +LP KL+C +
Sbjct: 19  PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLL 78

Query: 405 INVELKAEADTD 440
            +V L A+ +TD
Sbjct: 79  HSVTLHADTETD 90

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
 Frame = +3

Query: 237 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPXKLLCRVINV 413
           ELWHACAGPLV +P+VG LV+YF QGH EQV  S  + A  Q+  Y +LP +L+C+V NV
Sbjct: 54  ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNV 113

Query: 414 ELKAEADTD 440
            L A+ D+D
Sbjct: 114 TLHADKDSD 122

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 35/71 (49%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVI 83

Query: 408 NVELKAEADTD 440
            + LK E ++D
Sbjct: 84  AIHLKVENNSD 94

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 35/71 (49%), Positives = 53/71 (74%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y ELWHACAGPL  +P+ G++V YFPQGH+EQ +A ++  +  ++  +DL  +++CRV+
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVV 120

Query: 408 NVELKAEADTD 440
           NV+L A  DTD
Sbjct: 121 NVQLLANKDTD 131

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 34/71 (47%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVI 83

Query: 408 NVELKAEADTD 440
            + LK E ++D
Sbjct: 84  AIHLKVENNSD 94

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 34/71 (47%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVI 83

Query: 408 NVELKAEADTD 440
            + LK E ++D
Sbjct: 84  AIHLKVENNSD 94

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 37/68 (54%), Positives = 46/68 (67%)
 Frame = +3

Query: 237 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVINVE 416
           ELWHACAGPL+++P  G LV YFPQGH EQV ASM +         +LP KL+C + NV 
Sbjct: 24  ELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVT 83

Query: 417 LKAEADTD 440
           L A+ +TD
Sbjct: 84  LNADPETD 91

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 32/71 (45%), Positives = 49/71 (69%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVI 407
           +Y++LW+ CAGPL  +P+ G+ V+YFPQGHIE +E S      +   ++DLP KL CRV+
Sbjct: 24  MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 83

Query: 408 NVELKAEADTD 440
            ++ K + +TD
Sbjct: 84  AIDRKVDKNTD 94

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 75.5 bits (184), Expect = 6e-14
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMN-QVAGNQMRLYDLPXKLLCRV 404
           L  ELWHACAGPLV++P  G  V YFPQGH EQV A+ N +V G+      LP +L+C++
Sbjct: 19  LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQL 78

Query: 405 INVELKAEADTD 440
            NV + A+ +TD
Sbjct: 79  HNVTMHADVETD 90

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +3

Query: 213 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKL 392
           SAG  +  ELWHACAGPL+++P+ G LV YFPQGH+E       Q       +Y LP  +
Sbjct: 46  SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLE-------QAPDFSAAIYGLPPHV 98

Query: 393 LCRVINVELKAEADTD 440
            CR+++V+L AE  TD
Sbjct: 99  FCRILDVKLHAETTTD 114

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +3

Query: 228 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPXKLLCRV 404
           L  ELWHACAGPLV++P VG  V YFPQGH EQV AS N+     +  Y  L  +L+C++
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 79

Query: 405 INVELKAEADTD 440
            NV + A+ +TD
Sbjct: 80  HNVTMHADVETD 91

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 41/68 (60%)
 Frame = +3

Query: 237 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVINVE 416
           +LWHACAG +V +P +   VFYF QGH E   A  +  A        +P  +LCRV++V+
Sbjct: 10  QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPR------VPPLILCRVVSVK 63

Query: 417 LKAEADTD 440
             A+A+TD
Sbjct: 64  FLADAETD 71

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 42/68 (61%)
 Frame = +3

Query: 237 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPXKLLCRVINVE 416
           +LWHACAG +V +P +   VFYFPQGH E     ++   GN      +P  +LCRV+ ++
Sbjct: 19  QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD--FGN----LPIPPMVLCRVLAIK 72

Query: 417 LKAEADTD 440
             A+A++D
Sbjct: 73  YMADAESD 80

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +3

Query: 213 SAGDPLYDE----LWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL 380
           +AGD  + E    +W ACAG  V +P +   V+YFPQGH+E     ++ +  +       
Sbjct: 7   TAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSS------- 59

Query: 381 PXKLLCRVINVELKAEADTD 440
              + C + +++L A+  TD
Sbjct: 60  TSPVPCIITSIQLLADPVTD 79

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 273  VPRVGDLVFYFPQGHIEQVEA 335
            VP++GD V YFPQGH   +EA
Sbjct: 959  VPQMGDEVIYFPQGHEAYIEA 979

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
            [Includes: ATP-dependent asparagine adenylase (AsnA)
            (Asparagine activase); ATP-dependent glutamine adenylase
            (GlnA) (Glutamine activase); ATP-dependent tyrosine
            adenylase (TyrA) (Ty
          Length = 6486

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 270  TVPRVGDLVFYFPQGHIEQVEASMNQV--AGNQMRLYDLPXKLL 395
            T+ R GD+V Y P GHIE +    +QV   G+++ L ++   LL
Sbjct: 1871 TMYRTGDMVRYLPDGHIEYLGRIDHQVKIRGHRIELGEIEATLL 1914

>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 279 RVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPX--KLLCRVINVELKAEADTD 440
           R G   FY PQ  ++Q E    Q+AG    L+DL     +L R+ N++    AD D
Sbjct: 34  RAGICYFYPPQTLLDQQELLCGQLAGVVRCLWDLSGTPPMLIRMRNLKFAIRADGD 89

>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 273  VPRVGDLVFYFPQGHIEQVEA 335
            VP++GD V YF QGH   +EA
Sbjct: 958  VPQMGDEVIYFRQGHEAYIEA 978

>CH601_COREF (Q8CY27) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)|
          Length = 537

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 437 GVRLRLELDVDDPAEQLGRQIVEA 366
           GV +  ++DV+DP E LG Q+V++
Sbjct: 52  GVTIARDIDVEDPFENLGAQLVKS 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,624,604
Number of Sequences: 219361
Number of extensions: 292072
Number of successful extensions: 1060
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)