ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195183.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala synthetase (OSJNBb0022I16.5), mRNA Length = 1056 Score = 139 bits (70), Expect = 5e-30 Identities = 103/114 (90%) Strand = Plus / Plus Query: 167 cacacgccgtggccgtcgagccccgtggtgcccttcgaggaccccacgctcctgttcgcc 226 ||||||| ||||||||| |||||||| || ||| |||| ||||||||||| ||||||||| Sbjct: 73 cacacgcggtggccgtccagccccgtcgtccccgtcgacgaccccacgctgctgttcgcc 132 Query: 227 aacgccggtatgaaccagtacaagccggtcttcctcggcgccgccgacccggac 280 |||||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 133 aacgccgggatgaaccagttcaagccggtcttcctcggcaccgccgccccggac 186
>gb|AC092173.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0095J15, complete sequence Length = 156023 Score = 139 bits (70), Expect = 5e-30 Identities = 103/114 (90%) Strand = Plus / Plus Query: 167 cacacgccgtggccgtcgagccccgtggtgcccttcgaggaccccacgctcctgttcgcc 226 ||||||| ||||||||| |||||||| || ||| |||| ||||||||||| ||||||||| Sbjct: 155149 cacacgcggtggccgtccagccccgtcgtccccgtcgacgaccccacgctgctgttcgcc 155208 Query: 227 aacgccggtatgaaccagtacaagccggtcttcctcggcgccgccgacccggac 280 |||||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 155209 aacgccgggatgaaccagttcaagccggtcttcctcggcaccgccgccccggac 155262
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 139 bits (70), Expect = 5e-30 Identities = 103/114 (90%) Strand = Plus / Plus Query: 167 cacacgccgtggccgtcgagccccgtggtgcccttcgaggaccccacgctcctgttcgcc 226 ||||||| ||||||||| |||||||| || ||| |||| ||||||||||| ||||||||| Sbjct: 46576 cacacgcggtggccgtccagccccgtcgtccccgtcgacgaccccacgctgctgttcgcc 46635 Query: 227 aacgccggtatgaaccagtacaagccggtcttcctcggcgccgccgacccggac 280 |||||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 46636 aacgccgggatgaaccagttcaagccggtcttcctcggcaccgccgccccggac 46689
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 139 bits (70), Expect = 5e-30 Identities = 103/114 (90%) Strand = Plus / Plus Query: 167 cacacgccgtggccgtcgagccccgtggtgcccttcgaggaccccacgctcctgttcgcc 226 ||||||| ||||||||| |||||||| || ||| |||| ||||||||||| ||||||||| Sbjct: 5283378 cacacgcggtggccgtccagccccgtcgtccccgtcgacgaccccacgctgctgttcgcc 5283437 Query: 227 aacgccggtatgaaccagtacaagccggtcttcctcggcgccgccgacccggac 280 |||||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 5283438 aacgccgggatgaaccagttcaagccggtcttcctcggcaccgccgccccggac 5283491
>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full insert sequence Length = 3214 Score = 139 bits (70), Expect = 5e-30 Identities = 103/114 (90%) Strand = Plus / Plus Query: 167 cacacgccgtggccgtcgagccccgtggtgcccttcgaggaccccacgctcctgttcgcc 226 ||||||| ||||||||| |||||||| || ||| |||| ||||||||||| ||||||||| Sbjct: 219 cacacgcggtggccgtccagccccgtcgtccccgtcgacgaccccacgctgctgttcgcc 278 Query: 227 aacgccggtatgaaccagtacaagccggtcttcctcggcgccgccgacccggac 280 |||||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 279 aacgccgggatgaaccagttcaagccggtcttcctcggcaccgccgccccggac 332
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 139 bits (70), Expect = 5e-30 Identities = 103/114 (90%) Strand = Plus / Plus Query: 167 cacacgccgtggccgtcgagccccgtggtgcccttcgaggaccccacgctcctgttcgcc 226 ||||||| ||||||||| |||||||| || ||| |||| ||||||||||| ||||||||| Sbjct: 5284165 cacacgcggtggccgtccagccccgtcgtccccgtcgacgaccccacgctgctgttcgcc 5284224 Query: 227 aacgccggtatgaaccagtacaagccggtcttcctcggcgccgccgacccggac 280 |||||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 5284225 aacgccgggatgaaccagttcaagccggtcttcctcggcaccgccgccccggac 5284278
>gb|AY104750.1| Zea mays PCO077049 mRNA sequence Length = 3244 Score = 117 bits (59), Expect = 2e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 175 gtggccgtcgagccccgtggtgcccttcgaggaccccacgctcctgttcgccaacgccgg 234 |||||||||||| |||||||| ||| |||| ||||||||||| |||||||||||||| || Sbjct: 227 gtggccgtcgagtcccgtggtccccgtcgacgaccccacgctgctgttcgccaacgctgg 286 Query: 235 tatgaaccagtacaagccggtcttcctcggc 265 |||||||||| ||||||||||||||||||| Sbjct: 287 aatgaaccagttcaagccggtcttcctcggc 317
>ref|XM_756287.1| Ustilago maydis 521 hypothetical protein (UM05233.1) partial mRNA Length = 2973 Score = 65.9 bits (33), Expect = 6e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 197 cccttcgaggaccccacgctcctgttcgccaacgccggtatgaaccagtacaa 249 |||| ||| ||||| ||||| || ||||||||||||||||||||||||||||| Sbjct: 148 ccctacgatgacccaacgcttctcttcgccaacgccggtatgaaccagtacaa 200
>ref|XM_500483.1| Yarrowia lipolytica CLIB122, YALI0B04180g predicted mRNA Length = 2883 Score = 60.0 bits (30), Expect = 4e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 219 tgttcgccaacgccggtatgaaccagtacaagcc 252 |||| ||||||||||||||||||||||||||||| Sbjct: 131 tgtttgccaacgccggtatgaaccagtacaagcc 164
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 60.0 bits (30), Expect = 4e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 219 tgttcgccaacgccggtatgaaccagtacaagcc 252 |||| ||||||||||||||||||||||||||||| Sbjct: 553292 tgtttgccaacgccggtatgaaccagtacaagcc 553259
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagtacaag 250 ||||| ||||||||||||||||| ||||| |||||||||| |||| Sbjct: 163902 gacccaacgctcctgttcgccaatgccggcatgaaccagttcaag 163946
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 56.0 bits (28), Expect = 6e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagtacaagccggtcttcct 261 ||||||||||| |||| || |||||||| |||||||||| ||||||| ||||||| Sbjct: 1350851 gaccccacgctgttgtttgcgaacgccgggatgaaccagttcaagccgatcttcct 1350796
>ref|NM_209812.1| Eremothecium gossypii ADR363Cp (ADR363C), mRNA Length = 2871 Score = 56.0 bits (28), Expect = 6e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagtacaagccggtcttcct 261 ||||||||||| |||| || |||||||| |||||||||| ||||||| ||||||| Sbjct: 118 gaccccacgctgttgtttgcgaacgccgggatgaaccagttcaagccgatcttcct 173
>ref|XM_571590.1| Cryptococcus neoformans var. neoformans JEC21 alanine-tRNA ligase (CNF02520) partial mRNA Length = 3234 Score = 54.0 bits (27), Expect = 2e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 211 cacgctcctgttcgccaacgccggtatgaaccagtacaagccggtcttcct 261 |||||| || |||||||| || |||||||||||||||||||| ||||||| Sbjct: 377 cacgcttcttttcgccaatgctggtatgaaccagtacaagcctctcttcct 427
>ref|XM_318757.2| Anopheles gambiae str. PEST ENSANGP00000013174 (ENSANGG00000010685), partial mRNA Length = 2898 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 212 acgctcctgttcgccaacgccggtatgaaccagtacaagccggtcttcctcggc 265 ||||| ||||||||||| || || |||||||||| ||||||| |||| |||||| Sbjct: 106 acgctgctgttcgccaatgcgggcatgaaccagttcaagccgatctttctcggc 159
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaag 250 ||||||||| | ||| ||||||||||||||||||||| |||| Sbjct: 3572273 cccacgctcttattcaccaacgccggtatgaaccagttcaag 3572232
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 50.1 bits (25), Expect = 0.004 Identities = 40/45 (88%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagtacaag 250 ||||| ||||| |||||| |||| |||||||||||||||| |||| Sbjct: 172936 gacccgacgctgctgttcaccaatgccggtatgaaccagttcaag 172980
>ref|XM_381082.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00906.1) partial mRNA Length = 2874 Score = 48.1 bits (24), Expect = 0.015 Identities = 51/60 (85%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagtacaagccggtcttcctcggc 265 |||||||| || || ||| ||||||| || |||||||||| |||||| ||||||||||| Sbjct: 115 gaccccaccctgctcttcaccaacgctggcatgaaccagttcaagcccatcttcctcggc 174
>ref|NM_205934.1| Drosophila melanogaster Alanyl-tRNA synthetase CG13391-RB, transcript variant B (Aats-ala), mRNA Length = 3290 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Plus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 332 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 375
>ref|NM_078787.2| Drosophila melanogaster Alanyl-tRNA synthetase CG13391-RA, transcript variant A (Aats-ala), mRNA Length = 3151 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Plus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 193 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 236
>gb|AY069255.1| Drosophila melanogaster GM03058 full length cDNA Length = 3308 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Plus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 333 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 376
>gb|AC092234.1|AC092234 Drosophila melanogaster, chromosome 2L, region 29C-29D, BAC clone BACR02I15, complete sequence Length = 186490 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Minus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 3508 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 3465
>gb|AC092220.1|AC092220 Drosophila melanogaster, chromosome 2L, region 28B-29X, BAC clone BACR15P08, complete sequence Length = 170649 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Plus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 24394 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 24437
>dbj|AK111163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-B04, full insert sequence Length = 3036 Score = 48.1 bits (24), Expect = 0.015 Identities = 27/28 (96%) Strand = Plus / Plus Query: 225 ccaacgccggtatgaaccagtacaagcc 252 ||||||| |||||||||||||||||||| Sbjct: 224 ccaacgctggtatgaaccagtacaagcc 251
>gb|AF188718.1|AF188718 Drosophila melanogaster alanyl-tRNA synthetase (alaS) mRNA, complete cds Length = 3117 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Plus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 174 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 217
>gb|AE003621.3| Drosophila melanogaster chromosome 2L, section 30 of 83 of the complete sequence Length = 308031 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Minus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 19670 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 19627
>gb|AC004423.1|AC004423 Drosophila melanogaster DNA sequence (P1 DS02110 (D147)), complete sequence Length = 79076 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Minus Query: 209 cccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 |||||||| |||||||||||||||| ||||| |||| |||||| Sbjct: 2012 cccacgctgttgttcgccaacgccggcatgaatcagttcaagcc 1969
>ref|XM_789424.1| PREDICTED: Strongylocentrotus purpuratus similar to alanyl-tRNA synthetase (LOC589790), mRNA Length = 3300 Score = 46.1 bits (23), Expect = 0.060 Identities = 41/47 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagtacaagcc 252 ||||| || ||||| |||||||| || ||||||||||||| |||||| Sbjct: 115 gaccctaccctcctcttcgccaatgcgggtatgaaccagttcaagcc 161
>emb|AJ243674.3|SGR243674 Streptomyces griseus subsp. griseus (partial) ppk, mutT, pstS, pstC, pstA, pstB, pitH genes and ORF Length = 9302 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 ggtcttcctcggcgccgccgacccgg 278 |||| ||||||||||||||||||||| Sbjct: 3000 ggtcgtcctcggcgccgccgacccgg 3025
>ref|XM_694672.1| PREDICTED: Danio rerio similar to alanyl-tRNA synthetase (LOC571112), partial mRNA Length = 513 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 265 gaccccacgctgctcttcgccaatgccggaatgaacca 302
>ref|XM_685358.1| PREDICTED: Danio rerio similar to transglutaminase (LOC561962), mRNA Length = 3195 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 2275 gaccccacgctgctcttcgccaatgccggaatgaacca 2312
>ref|XM_685225.1| PREDICTED: Danio rerio similar to alanyl-tRNA synthetase (LOC561826), mRNA Length = 589 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 122 gaccccacgctgctcttcgccaatgccggaatgaacca 159
>ref|XM_685155.1| PREDICTED: Danio rerio similar to transglutaminase (LOC561748), mRNA Length = 1992 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 1525 gaccccacgctgctcttcgccaatgccggaatgaacca 1562
>ref|XM_683097.1| PREDICTED: Danio rerio similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) (LOC559731), mRNA Length = 589 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 122 gaccccacgctgctcttcgccaatgccggaatgaacca 159
>ref|XM_682611.1| PREDICTED: Danio rerio similar to alanyl-tRNA synthetase (LOC559282), mRNA Length = 2178 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 106 gaccccacgctgctcttcgccaatgccggaatgaacca 143
>ref|XM_702496.1| PREDICTED: Danio rerio similar to Alanyl-tRNA synthetase, transcript variant 3 (LOC559189), mRNA Length = 3672 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 259 gaccccacgctgctcttcgccaatgccggaatgaacca 296
>ref|XM_679559.1| PREDICTED: Danio rerio similar to Alanyl-tRNA synthetase, transcript variant 1 (LOC559189), mRNA Length = 3613 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 200 gaccccacgctgctcttcgccaatgccggaatgaacca 237
>ref|XM_702495.1| PREDICTED: Danio rerio similar to Alanyl-tRNA synthetase, transcript variant 2 (LOC559189), mRNA Length = 589 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 122 gaccccacgctgctcttcgccaatgccggaatgaacca 159
>ref|XM_682457.1| PREDICTED: Danio rerio similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) (LOC559142), mRNA Length = 2334 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 106 gaccccacgctgctcttcgccaatgccggaatgaacca 143
>emb|BX571681.7| Zebrafish DNA sequence from clone DKEY-73N10 in linkage group 18, complete sequence Length = 184543 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 151021 gaccccacgctgctcttcgccaatgccggaatgaacca 151058 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 122916 gaccccacgctgctcttcgccaatgccggaatgaacca 122953
>emb|BX571883.3| Zebrafish DNA sequence from clone DKEY-151P17 in linkage group 18, complete sequence Length = 253172 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 242002 gaccccacgctgctcttcgccaatgccggaatgaacca 242039 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 203829 gaccccacgctgctcttcgccaatgccggaatgaacca 203866 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 159527 gaccccacgctgctcttcgccaatgccggaatgaacca 159564
>emb|BX649641.19| Zebrafish DNA sequence from clone CH211-223O1 in linkage group 18, complete sequence Length = 141018 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 99166 gaccccacgctgctcttcgccaatgccggaatgaacca 99203 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 34711 gaccccacgctgctcttcgccaatgccggaatgaacca 34748 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 12338 gaccccacgctgctcttcgccaatgccggaatgaacca 12375
>gb|BC071378.1| Danio rerio alanyl-tRNA synthetase, mRNA (cDNA clone IMAGE:6895974), partial cds Length = 2471 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaacca 243 ||||||||||| || |||||||| ||||| |||||||| Sbjct: 305 gaccccacgctgctcttcgccaatgccggaatgaacca 342
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 0.93 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 ggtatgaaccagtacaagccggtcttcct 261 |||||||||||||||||||| ||||||| Sbjct: 732024 ggtatgaaccagtacaagcctctcttcct 731996
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 0.93 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 acaagccggtcttcctcggcgccgccgac 274 ||||| |||||||| |||||||||||||| Sbjct: 575415 acaagtcggtcttcgtcggcgccgccgac 575443
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 42.1 bits (21), Expect = 0.93 Identities = 39/45 (86%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagtacaag 250 |||||||||||| ||||| |||| ||||| ||||| |||| |||| Sbjct: 1322035 gaccccacgctcatgttcaccaatgccggcatgaatcagttcaag 1322079
>ref|XM_467910.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1559 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gtcttcctcggcgccgccga 273 |||||||||||||||||||| Sbjct: 570 gtcttcctcggcgccgccga 589
>ref|XM_363444.1| Magnaporthe grisea 70-15 hypothetical protein (MG01370.4) partial mRNA Length = 2184 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 acacgccgtggccgtcgagc 187 |||||||||||||||||||| Sbjct: 943 acacgccgtggccgtcgagc 924
>gb|BC033273.1| Mus musculus alanyl-tRNA synthetase, mRNA (cDNA clone MGC:25868 IMAGE:4196789), complete cds Length = 4891 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 424 gaccccactctgctcttcgccaacgctggcatgaaccagt 463
>ref|NM_146217.3| Mus musculus alanyl-tRNA synthetase (Aars), mRNA Length = 4891 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 424 gaccccactctgctcttcgccaacgctggcatgaaccagt 463
>ref|XM_677497.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9320.2), mRNA Length = 3165 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ctggccgtccgccctggtcc 131 |||||||||||||||||||| Sbjct: 2580 ctggccgtccgccctggtcc 2599
>ref|XM_445923.1| Candida glabrata CBS138, CAGL0E05390g partial mRNA Length = 2871 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 218 ctgttcgccaacgccggtatgaaccagtacaa 249 |||||| ||||||| ||||||||||| ||||| Sbjct: 130 ctgttcaccaacgcgggtatgaaccaatacaa 161
>gb|AY223875.1| Mus musculus alanyl-tRNA synthase (Aars) mRNA, complete cds Length = 3654 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 489 gaccccactctgctcttcgccaacgctggcatgaaccagt 528
>emb|Z49821.1|SCPDR10 S.cerevisiae PDR10, MYO2, PDR10, SCD5, MIP1, ALA1, KRE5 and TEA1 genes Length = 29445 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 ttcgccaacgccggtatgaaccagtacaagcc 252 ||||| || |||||||||||||| |||||||| Sbjct: 21231 ttcgctaatgccggtatgaaccaatacaagcc 21200
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence Length = 687501 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 218 ctgttcgccaacgccggtatgaaccagtacaa 249 |||||| ||||||| ||||||||||| ||||| Sbjct: 527221 ctgttcaccaacgcgggtatgaaccaatacaa 527190
>dbj|AK158139.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930035D01 product:alanyl-tRNA synthetase, full insert sequence Length = 3677 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 498 gaccccactctgctcttcgccaacgctggcatgaaccagt 537
>dbj|AK150227.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530145P07 product:alanyl-tRNA synthetase, full insert sequence Length = 3639 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 477 gaccccactctgctcttcgccaacgctggcatgaaccagt 516
>dbj|AK036738.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830169C09 product:alanyl-tRNA synthetase, full insert sequence Length = 4191 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 158 gaccccactctgctcttcgccaacgctggcatgaaccagt 197
>dbj|AK052744.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630041L13 product:similar to ALARS A [Caenorhabditis elegans], full insert sequence Length = 2222 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 158 gaccccactctgctcttcgccaacgctggcatgaaccagt 197
>gb|DQ066215.1| Ixodes scapularis isolate ISUFL14 ADP/ATP translocase mRNA, complete cds Length = 900 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 agtacaagccggtcttcctcggcg 266 ||||||||| |||||||||||||| Sbjct: 281 agtacaagcaggtcttcctcggcg 304
>ref|NM_058880.2| Caenorhabditis elegans Alanyl tRNA Synthetase family member (ars-2) (ars-2) mRNA, complete cds Length = 3472 Score = 40.1 bits (20), Expect = 3.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 221 ttcgccaacgccggtatgaaccagtacaagccggtcttcctcgg 264 ||||||||||| || |||||||| | ||||||| | |||||||| Sbjct: 155 ttcgccaacgcgggaatgaaccaattcaagccgttgttcctcgg 198
>dbj|AK044451.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930013P06 product:ALANYL-TRNA SYNTHETASE (EC 6.1.1.7) (ALANINE--TRNA LIGASE) (ALARS) homolog [Homo sapiens], full insert sequence Length = 3463 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 300 gaccccactctgctcttcgccaacgctggcatgaaccagt 339
>dbj|AK085725.1| Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN full-length enriched library, clone:D730028M10 product:ALANYL-TRNA SYNTHETASE (EC 6.1.1.7) (ALANINE--TRNA LIGASE) (ALARS) homolog [Homo sapiens], full insert sequence Length = 3653 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 490 gaccccactctgctcttcgccaacgctggcatgaaccagt 529
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gtcttcctcggcgccgccga 273 |||||||||||||||||||| Sbjct: 32040633 gtcttcctcggcgccgccga 32040652
>dbj|AK192606.1| Mus musculus cDNA, clone:Y1G0109G10, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000063919, based on BLAT search Length = 226 Score = 40.1 bits (20), Expect = 3.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 206 gaccccacgctcctgttcgccaacgccggtatgaaccagt 245 |||||||| || || ||||||||||| || |||||||||| Sbjct: 70 gaccccaccctgctcttcgccaacgctggcatgaaccagt 109
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gtcttcctcggcgccgccga 273 |||||||||||||||||||| Sbjct: 61008 gtcttcctcggcgccgccga 61027
>dbj|AK069088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007I17, full insert sequence Length = 1559 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gtcttcctcggcgccgccga 273 |||||||||||||||||||| Sbjct: 570 gtcttcctcggcgccgccga 589
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gtcttcctcggcgccgccga 273 |||||||||||||||||||| Sbjct: 2728320 gtcttcctcggcgccgccga 2728339
>emb|Z75243.1|SCYOR335C S.cerevisiae chromosome XV reading frame ORF YOR335c Length = 3764 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 ttcgccaacgccggtatgaaccagtacaagcc 252 ||||| || |||||||||||||| |||||||| Sbjct: 2969 ttcgctaatgccggtatgaaccaatacaagcc 2938
>gb|DQ332533.1| Synthetic construct Saccharomyces cerevisiae clone FLH202967.01X ALA1 gene, complete sequence Length = 2877 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 221 ttcgccaacgccggtatgaaccagtacaagcc 252 ||||| || |||||||||||||| |||||||| Sbjct: 133 ttcgctaatgccggtatgaaccaatacaagcc 164
>gb|U18672.1|SCU18672 Saccharomyces cerevisiae cytoplasmic alanyl-tRNA synthetase gene, complete cds Length = 2992 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 221 ttcgccaacgccggtatgaaccagtacaagcc 252 ||||| || |||||||||||||| |||||||| Sbjct: 196 ttcgctaatgccggtatgaaccaatacaagcc 227
>gb|U41660.1|CEU41660 Caenorhabditis elegans alanyl-tRNA synthetase-like protein AlaRS A mRNA, complete cds Length = 887 Score = 40.1 bits (20), Expect = 3.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 221 ttcgccaacgccggtatgaaccagtacaagccggtcttcctcgg 264 ||||||||||| || |||||||| | ||||||| | |||||||| Sbjct: 150 ttcgccaacgcgggaatgaaccaattcaagccgttgttcctcgg 193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,411,739 Number of Sequences: 3902068 Number of extensions: 1411739 Number of successful extensions: 34426 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33938 Number of HSP's gapped (non-prelim): 488 length of query: 283 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 261 effective length of database: 17,147,199,772 effective search space: 4475419140492 effective search space used: 4475419140492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
