ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) ... 31 0.99
2B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band... 29 2.9
3PRTP_HCMVA (P16724) Probable processing and transport protein UL... 28 6.4

>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)|
          Length = 1388

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 184 ALQPWQPSPSTSQRG---VPLLLRARRKPSRGAKSPS 83
           A+ PW+PSPS ++     VP+L  +  KPS    SPS
Sbjct: 75  AIAPWEPSPSPTETAWTVVPVLKSSALKPSTVQFSPS 111



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>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 175 PWQPSPSTSQRGVPLLLR----ARRKPSRGAKSPSRQ 77
           P QPSP+T+   V   L+    A RKP R + SP  Q
Sbjct: 140 PQQPSPATTPSAVQFFLQEDEGAERKPERTSPSPPTQ 176



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>PRTP_HCMVA (P16724) Probable processing and transport protein UL56 (HFLF0|
           protein)
          Length = 850

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 178 QPWQPS--PSTSQRGVPLLLRARRKPSRGAKS 89
           +PW PS  PS+S  GV   +RA RK  R A S
Sbjct: 799 RPWLPSPYPSSSTAGVSRRVRATRKRPRRASS 830


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,095,727
Number of Sequences: 219361
Number of extensions: 334946
Number of successful extensions: 1169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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