Clone Name | bastl44d03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 127 catggcgtcaccctcgggaaaccctaaccccaaccccagcgcccctttcgagctcagcag 186 ||||||||| |||||||| ||||||||||||| ||||| | || |||||||||| | | Sbjct: 11062797 catggcgtctccctcggggaaccctaaccccacccccaaccagcccttcgagctcaaccg 11062856 Query: 187 gctcttcaagc 197 |||||||||| Sbjct: 11062857 cctcttcaagc 11062867
>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0501G08 Length = 173505 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 127 catggcgtcaccctcgggaaaccctaaccccaaccccagcgcccctttcgagctcagcag 186 ||||||||| |||||||| ||||||||||||| ||||| | || |||||||||| | | Sbjct: 146879 catggcgtctccctcggggaaccctaaccccacccccaaccagcccttcgagctcaaccg 146938 Query: 187 gctcttcaagc 197 |||||||||| Sbjct: 146939 cctcttcaagc 146949
>dbj|AK111728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037K06, full insert sequence Length = 4491 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 127 catggcgtcaccctcgggaaaccctaaccccaaccccagcgcccctttcgagctcagcag 186 ||||||||| |||||||| ||||||||||||| ||||| | || |||||||||| | | Sbjct: 121 catggcgtctccctcggggaaccctaaccccacccccaaccagcccttcgagctcaaccg 180 Query: 187 gctcttcaagc 197 |||||||||| Sbjct: 181 cctcttcaagc 191
>ref|XM_467537.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4486 Score = 44.1 bits (22), Expect = 0.35 Identities = 43/50 (86%) Strand = Plus / Plus Query: 149 cctaaccccaaccccagcgcccctttcgagctcagcaggctcttcaagcc 198 |||||||||||||| ||| | || |||||| |||||| ||| |||||||| Sbjct: 130 cctaaccccaaccctagcactcccttcgaggtcagcatgctgttcaagcc 179
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.35 Identities = 43/50 (86%) Strand = Plus / Minus Query: 149 cctaaccccaaccccagcgcccctttcgagctcagcaggctcttcaagcc 198 |||||||||||||| ||| | || |||||| |||||| ||| |||||||| Sbjct: 30044300 cctaaccccaaccctagcactcccttcgaggtcagcatgctgttcaagcc 30044251
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 44.1 bits (22), Expect = 0.35 Identities = 43/50 (86%) Strand = Plus / Minus Query: 149 cctaaccccaaccccagcgcccctttcgagctcagcaggctcttcaagcc 198 |||||||||||||| ||| | || |||||| |||||| ||| |||||||| Sbjct: 23897 cctaaccccaaccctagcactcccttcgaggtcagcatgctgttcaagcc 23848
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 44.1 bits (22), Expect = 0.35 Identities = 43/50 (86%) Strand = Plus / Minus Query: 149 cctaaccccaaccccagcgcccctttcgagctcagcaggctcttcaagcc 198 |||||||||||||| ||| | || |||||| |||||| ||| |||||||| Sbjct: 144576 cctaaccccaaccctagcactcccttcgaggtcagcatgctgttcaagcc 144527
>dbj|AK122035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112L23, full insert sequence Length = 4485 Score = 44.1 bits (22), Expect = 0.35 Identities = 43/50 (86%) Strand = Plus / Plus Query: 149 cctaaccccaaccccagcgcccctttcgagctcagcaggctcttcaagcc 198 |||||||||||||| ||| | || |||||| |||||| ||| |||||||| Sbjct: 130 cctaaccccaaccctagcactcccttcgaggtcagcatgctgttcaagcc 179
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 agcctcccccaaaccctaacca 216 |||||||||||||||||||||| Sbjct: 1358010 agcctcccccaaaccctaacca 1357989
>gb|AY521027.1| Ornithodoros moubata proteasome alpha subunit mRNA, complete cds Length = 862 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gagctcagcaggctcttcaag 196 ||||||||||||||||||||| Sbjct: 584 gagctcagcaggctcttcaag 604
>emb|BX323077.15| Zebrafish DNA sequence from clone DKEYP-110E4 in linkage group 14, complete sequence Length = 195732 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 aaccctaaccccaaccccagc 166 ||||||||||||||||||||| Sbjct: 2541 aaccctaaccccaaccccagc 2521
>gb|AF464763.1| Candida dubliniensis hypothetical protein gene, complete cds; and hypothetical protein YOL57 gene, partial cds Length = 6737 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 aaccctaaccccaaccccagc 166 ||||||||||||||||||||| Sbjct: 4927 aaccctaaccccaaccccagc 4907
>gb|AF236884.1|AF236884 Homo sapiens clone c13 chromosome 20, telomeric repeat region Length = 1396 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 aaccctaaccccaaccccagc 166 ||||||||||||||||||||| Sbjct: 772 aaccctaaccccaaccccagc 752 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 543 aaaccctaaccccaacccca 524
>gb|AF104455.1| Homo sapiens chromosome 7qtelo BAC F6, complete sequence Length = 71353 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 32187 aaaccctaaccccaacccca 32206
>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence Length = 168158 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 113079 aaaccctaaccccaacccca 113098
>emb|AL954642.9| Human DNA sequence from clone RP11-885N19 on chromosome 9 Contains the 3' end of the CACNA1B gene for alpha 1B subunit of L type voltage-dependent calcium channel, a pseudogene similar to part of interleukin 9 receptor (ILR9), a tubulin, beta polypeptide 4, member Q (TUBB4Q) pseudogene and five CpG islands, complete sequence Length = 154372 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 55212 aaaccctaaccccaacccca 55193
>emb|AL713922.12| Human DNA sequence from clone RP11-631M21 on chromosome 10 Contains a novel gene, the gene for a novel protein similar to beta-tubulin 4Q (TUBB4Q) (LOC253936), the interleukin 9 receptor (IL9R) pseudogene (IL9RP2), the 5' end of the gene for adenovirus 5 E1A binding protein (BS69), a novel pseudogene (FLJ40100) and four CpG islands, complete sequence Length = 164405 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 50395 aaaccctaaccccaacccca 50414
>emb|AL591424.12| Human DNA sequence from clone RP11-424E7 on chromosome 9 Contains the 3' end of the CACNA1B gene for alpha 1B subunit of L type voltage-dependent calcium channel, a pseudogene similar to part of interleukin 9 receptor (ILR9), a tubulin, beta polypeptide 4, member Q (TUBB4Q) pseudogene and five CpG islands, complete sequence Length = 201853 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 33130 aaaccctaaccccaacccca 33149
>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence Length = 135363 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cccccaaaccctaaccaccc 219 |||||||||||||||||||| Sbjct: 105810 cccccaaaccctaaccaccc 105791
>emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region; segment 2/2 Length = 158661 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 157727 aaaccctaaccccaacccca 157708
>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13, complete sequence Length = 258636 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 aaccctaaccccaaccccag 165 |||||||||||||||||||| Sbjct: 154608 aaccctaaccccaaccccag 154589
>emb|BX511155.25| Zebrafish DNA sequence from clone DKEY-56D18 in linkage group 19, complete sequence Length = 205235 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 192734 aaaccctaaccccaacccca 192715
>emb|BX957332.10| Zebrafish DNA sequence from clone DKEY-170K13 in linkage group 19, complete sequence Length = 141125 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 137555 aaaccctaaccccaacccca 137574
>emb|BX248234.13| Zebrafish DNA sequence from clone DKEY-13E15 in linkage group 16, complete sequence Length = 220538 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 87522 aaaccctaaccccaacccca 87503
>emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 in linkage group 1, complete sequence Length = 160094 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 aaccctaaccccaaccccag 165 |||||||||||||||||||| Sbjct: 69664 aaccctaaccccaaccccag 69683
>ref|NM_070539.1| Caenorhabditis elegans K03D3.6 (K03D3.6) mRNA, complete cds Length = 1683 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cccgcccttccaccgcaacc 338 |||||||||||||||||||| Sbjct: 1511 cccgcccttccaccgcaacc 1530
>gb|AC152945.1| Mus musculus 10 BAC RP23-257F18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175982 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 199 tcccccaaaccctaaccaccccacaacc 226 |||||| ||||||||||||||| ||||| Sbjct: 32445 tccccctaaccctaaccaccccccaacc 32472
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cccccaaaccctaaccaccc 219 |||||||||||||||||||| Sbjct: 6049727 cccccaaaccctaaccaccc 6049708
>gb|AF270543.1|AF270543 Homo sapiens clone 18ptel_639c7t3c18t3c15t3c10t3 sequence Length = 2869 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 1 aaaccctaaccccaacccca 20
>dbj|AK100578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K02, full insert sequence Length = 3594 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cccccaaaccctaaccaccc 219 |||||||||||||||||||| Sbjct: 25 cccccaaaccctaaccaccc 44
>emb|BX088720.8| Zebrafish DNA sequence from clone CH211-195M2 in linkage group 22, complete sequence Length = 190269 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 169046 aaaccctaaccccaacccca 169027
>emb|BX324170.6| Zebrafish DNA sequence from clone DKEY-172O19 in linkage group 22, complete sequence Length = 181536 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 18198 aaaccctaaccccaacccca 18179
>emb|CR759887.7| Zebrafish DNA sequence from clone DKEY-80C24 in linkage group 25, complete sequence Length = 215263 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 aaccctaaccccaaccccag 165 |||||||||||||||||||| Sbjct: 141028 aaccctaaccccaaccccag 141009
>dbj|AP001005.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-683L23, complete sequence Length = 137001 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 48090 aaaccctaaccccaacccca 48109
>emb|AL928678.16| Mouse DNA sequence from clone RP23-273B19 on chromosome 2, complete sequence Length = 167304 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 33689 aaaccctaaccccaacccca 33670 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 33301 aaaccctaaccccaacccca 33282
>emb|CR854989.8| Zebrafish DNA sequence from clone DKEY-220M7 in linkage group 16, complete sequence Length = 101111 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 90480 aaaccctaaccccaacccca 90499
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cccccaaaccctaaccaccc 219 |||||||||||||||||||| Sbjct: 6116204 cccccaaaccctaaccaccc 6116185
>emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, complete sequence Length = 113198 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 aaccctaaccccaaccccag 165 |||||||||||||||||||| Sbjct: 25830 aaccctaaccccaaccccag 25811
>emb|AL161645.14| Human DNA sequence from clone RP11-108K14 on chromosome 10 Contains the 3' end of a novel gene (LOC92170) (FLJ90495, FLJ39553), three novel genes, the CYP2E1 gene for family 2 subfamily E polypeptide 1 cytochrome P450, a novel gene (LOC93426), the 3' end of a olfactory receptor protein pseudogene and eight CpG islands, complete sequence Length = 161644 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 151089 aaaccctaaccccaacccca 151070
>emb|Z82276.1|CEK03D3 Caenorhabditis elegans Cosmid K03D3, complete sequence Length = 24942 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cccgcccttccaccgcaacc 338 |||||||||||||||||||| Sbjct: 10542 cccgcccttccaccgcaacc 10561 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cccgcccttccaccgcaacc 338 |||||||||||||||||||| Sbjct: 4518 cccgcccttccaccgcaacc 4537
>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence Length = 233632 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 1161 aaaccctaaccccaacccca 1180
>emb|X16162.1|HSTEL Human DNA homologous to human telomeric sequence Length = 973 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 413 aaaccctaaccccaacccca 394
>gb|M57752.1|HUMTARSTB3 Human telomere associated repeat sequence, complete sequence Length = 4408 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaaccctaaccccaacccca 164 |||||||||||||||||||| Sbjct: 3474 aaaccctaaccccaacccca 3455 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,723,399 Number of Sequences: 3902068 Number of extensions: 1723399 Number of successful extensions: 51916 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51602 Number of HSP's gapped (non-prelim): 314 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)