ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44c10 |
|---|---|
| Clone Library Name | barley_pub |
>RBS3_FRIAG (O22573) Ribulose bisphosphate carboxylase small chain 3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) Length = 179 Score = 31.6 bits (70), Expect = 0.79 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +3 Query: 81 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 260 RA+P A+M VAP S + +KP+ +S L G ++ K W V Sbjct: 16 RAAPAQASM-VAPFVGLKSASAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVG 67 Query: 261 ARKFQFINFLSTL 299 +KF+ +++L TL Sbjct: 68 LKKFETLSYLPTL 80
>ARFG3_MOUSE (Q9D8S3) ADP-ribosylation factor GTPase-activating protein 3 (ARF| GAP 3) Length = 525 Score = 31.6 bits (70), Expect = 0.79 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Frame = +3 Query: 117 PGEAAPSGMYYHTKRKPSDPISGLSLP----GAKMVGNWGFGSVTKDWESVNARKFQ 275 PG+AAP+ + K+KP+ GL GA+ + N F + K ++V+ RK Q Sbjct: 203 PGKAAPAEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQ 259
>RBS_MUSAC (O24045) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 180 Score = 31.6 bits (70), Expect = 0.79 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = +3 Query: 81 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 260 RASP ++M VAP S + RKP+ +S L G ++ K W Sbjct: 15 RASPAQSSM-VAPFTGLKSASAFPVTRKPNADLSHLPSNGGRV-------QCMKVWPIEG 66 Query: 261 ARKFQFINFLSTLR 302 +KF+ +++L T++ Sbjct: 67 VKKFETLSYLPTMK 80
>RBS_MANES (Q42915) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 182 Score = 31.2 bits (69), Expect = 1.0 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +3 Query: 81 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 260 R SP A M VAP S + T RK + I+ ++ G K+ K W ++ Sbjct: 16 RVSPAQATM-VAPFTGLKSTPVFPTTRKTNSDITSITSNGGKV-------QCMKVWPTLG 67 Query: 261 ARKFQFINFLSTLRK 305 +KF+ +++L L + Sbjct: 68 MKKFETLSYLPPLTR 82
>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2014 Score = 30.4 bits (67), Expect = 1.8 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Frame = +2 Query: 5 QGDRGATRRFPQSSPPLRPAPKTTVPRFAAVSGH-GRRPRRGGALWHVLPHKKEAF*PHQ 181 +GDR R P + P RP + SGH G R GG W P++ Sbjct: 1047 EGDRQLQRTSPPARTPARPPERKAQIERHLESGHTGPRQSLGG--WQSQERLSGPQSPNR 1104 Query: 182 WPFTSW--CKDGWQLGIWQCYQG 244 P SW K+G LG W +G Sbjct: 1105 HPEKSWGSQKEGPSLGGWPELEG 1127
>RBS2_FRIAG (O22572) Ribulose bisphosphate carboxylase small chain 2,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2) Length = 179 Score = 29.6 bits (65), Expect = 3.0 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 87 SPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPG-AKMVGNWGFGSVTKDWESVNA 263 S + A VAP +A+ + K + P++ ++ G + + N G K W V Sbjct: 9 SSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGL 68 Query: 264 RKFQFINFLSTL 299 +KF+ +++L TL Sbjct: 69 KKFETLSYLPTL 80
>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 524 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/55 (25%), Positives = 21/55 (38%) Frame = +3 Query: 66 QKPQCRASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFG 230 ++P +PP APG SG + G + +M +WGFG Sbjct: 24 ERPGAEGAPPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFG 78
>RBS1_BRANA (P05346) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 181 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = +3 Query: 93 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 272 P+ A VAP S + RK ++ I+ + V N G S K W V +KF Sbjct: 15 PAQATMVAPFTGLKSSSAFPVTRKANNDITSI-------VSNGGRVSCMKVWPPVGKKKF 67 Query: 273 QFINFLSTL 299 + +++L L Sbjct: 68 ETLSYLPDL 76
>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3163 Score = 29.6 bits (65), Expect = 3.0 Identities = 18/86 (20%), Positives = 35/86 (40%) Frame = +3 Query: 162 KPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 341 + +P L A M+ +WG+ +T + A + F S ++ Y+A Sbjct: 2781 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2840 Query: 342 MIYSSVEQTEQKKSEVLIILDSDNED 419 +Y E ++ ++ L + D ED Sbjct: 2841 KLYLDKEPAQEDLTQYLQAIFEDYED 2866
>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1/4) Length = 179 Score = 28.9 bits (63), Expect = 5.1 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = +3 Query: 84 ASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNA 263 A+P A+M VAP S + +KP+ +S L G ++ K W V Sbjct: 17 AAPAQASM-VAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVGL 68 Query: 264 RKFQFINFLSTL 299 +KF+ +++L TL Sbjct: 69 KKFETLSYLPTL 80
>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3164 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/86 (20%), Positives = 34/86 (39%) Frame = +3 Query: 162 KPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 341 + +P L A M+ +WG+ +T + A + F S ++ Y+A Sbjct: 2782 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2841 Query: 342 MIYSSVEQTEQKKSEVLIILDSDNED 419 +Y E ++ + L + D ED Sbjct: 2842 KLYLDKEPAQEDLTHYLQAIFEDYED 2867
>MUTL_RHIME (Q92RP4) DNA mismatch repair protein mutL| Length = 605 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 73 HSAALRRRQRPWTSPPARRRPLACITTQKGSLLTPSVAFHFLVQ 204 H A +R Q PW++ + RPL +G P AF Q Sbjct: 348 HRAGQQRPQEPWSAAASPHRPLRFEEAARGFAEAPQAAFSDFAQ 391
>EPHB3_CHICK (Q07498) Ephrin type-B receptor 3 (EC 2.7.10.1) (Tyrosine-protein| kinase receptor CEK10) (Fragment) Length = 988 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = -2 Query: 365 LLDRAINHISFSTRHITLSGLTQSRKEIYKLELPSIHTF---PVLGNTAKSPIANHLCT 198 L R +++ F R + L+GLT+ R I K+ +TF V G ++KSP H + Sbjct: 358 LCSRCDDNVEFVPRQLGLTGLTERRIYISKVMAHPQYTFEIQAVNGISSKSPYPPHFAS 416
>RBS2_BRANA (P27985) Ribulose bisphosphate carboxylase small chain F1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit F1) Length = 181 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = +3 Query: 93 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 272 P+ A VAP S + RK ++ I+ ++ G ++ S K W V +KF Sbjct: 15 PAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRV-------SCMKVWPPVGKKKF 67 Query: 273 QFINFLSTL 299 + +++L L Sbjct: 68 ETLSYLPDL 76
>ZNF74_HUMAN (Q16587) Zinc finger protein 74 (hZNF7)| Length = 643 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -1 Query: 54 RGGEDWGKRRVAPRSPCP 1 RG E W +R PR PCP Sbjct: 97 RGEEPWSMQREVPRGPCP 114
>RBS2B_ARATH (P10797) Ribulose bisphosphate carboxylase small chain 2B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) Length = 181 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +3 Query: 93 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 272 P+ A VAP S + RK ++ I+ ++ G ++ S K W + +KF Sbjct: 15 PAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRV-------SCMKVWPPIGKKKF 67 Query: 273 QFINFLSTL 299 + +++L L Sbjct: 68 ETLSYLPDL 76
>RBS1B_ARATH (P10796) Ribulose bisphosphate carboxylase small chain 1B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) Length = 181 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +3 Query: 93 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 272 P+ A VAP S + RK ++ I+ ++ G ++ S K W + +KF Sbjct: 15 PAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRV-------SCMKVWPPIGKKKF 67 Query: 273 QFINFLSTL 299 + +++L L Sbjct: 68 ETLSYLPDL 76
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 123 EAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNW 221 E +PS MY + + SDP S PGA NW Sbjct: 1466 EPSPSSMYGNAEDSSSDPESLAEDPGAAARNNW 1498
>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1277 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/92 (25%), Positives = 40/92 (43%) Frame = +3 Query: 129 APSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKP 308 +PSG + T+ P P + S PG++ + GF WE + +T P Sbjct: 1080 SPSGPTWSTQSDPQAPENHSSSPGSRSLQTGGFA-----WEGEVENN---VYSQATGVVP 1131 Query: 309 TQSYVACAEANMIYSSVEQTEQKKSEVLIILD 404 Y A + + +++Q EQ+K + +LD Sbjct: 1132 QHKYHPTAGSYQLQFALQQLEQQKLQSRQLLD 1163
>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2511 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 35 PQSSPPLRPAPKTTVPRFAAVSG 103 P + PP PAP T+PR SG Sbjct: 406 PNTQPPPAPAPHATLPRLLRASG 428
>DPOD3_HUMAN (Q15054) DNA polymerase delta subunit 3 (DNA polymerase delta| subunit p66) Length = 466 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 35 PQSSPPLRPAPKT--TVPRFAAVSGHGRRPRR 124 P SPPL P PKT P + SG +R R+ Sbjct: 353 PPPSPPLEPVPKTEPEPPSVKSSSGENKRKRK 384
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 153 TKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQ 275 TK + D I +SL M+ +W FG V K E++N R F+ Sbjct: 12 TKNEDFDAIK-ISLASPDMIRSWSFGEVKKP-ETINYRTFK 50
>K1683_HUMAN (Q9H0B3) Protein KIAA1683| Length = 1180 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Frame = +2 Query: 8 GDRGATRRFPQSSPPLRPAPKTTVPRFAAVSG-----HGRRPRRGGALWHVLPHK 157 GD GATR P P + T P A V G P RG A W +K Sbjct: 850 GDNGATRAQPSMPGQAVPCQEDTGPADAGVVGGQSWNRAWEPARGAASWDTWRNK 904
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 153 TKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQ 275 TK + D I +SL M+ +W FG V K E++N R F+ Sbjct: 12 TKNEDFDAIK-ISLASPDMIRSWSFGEVKKP-ETINYRTFK 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,374,831 Number of Sequences: 219361 Number of extensions: 1365689 Number of successful extensions: 4894 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4607 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4890 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
