ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44c08 |
|---|---|
| Clone Library Name | barley_pub |
>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated| protein 130) (SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b 130 kDa subunit) (STAF130) Length = 1217 Score = 92.8 bits (229), Expect = 2e-19 Identities = 50/86 (58%), Positives = 61/86 (70%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 254 M+LY+LTLQRATG A+ G+FSG + QEI V+RG L+LLRPDP TG++ Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSG----------TKQQEIVVSRGKILELLRPDPNTGKV 50 Query: 255 RTLLSVDVFGAIRSLA*FRLTGATKD 332 TLL+V+VFG IRSL FRLTG TKD Sbjct: 51 HTLLTVEVFGVIRSLMAFRLTGGTKD 76
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 82.0 bits (201), Expect = 3e-16 Identities = 45/86 (52%), Positives = 56/86 (65%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 254 MYLY+LTLQ + V+G FSG + QEI VA+G L+LLRPD +TG++ Sbjct: 4 MYLYNLTLQASGSVNATVVGQFSG----------TRQQEIIVAKGSRLELLRPDTQTGKV 53 Query: 255 RTLLSVDVFGAIRSLA*FRLTGATKD 332 T+LS D FG IRSLA FRLTG +KD Sbjct: 54 DTVLSHDAFGVIRSLAAFRLTGGSKD 79
>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1| Length = 1271 Score = 73.9 bits (180), Expect = 9e-14 Identities = 39/86 (45%), Positives = 53/86 (61%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 254 M+LYSLT+Q T A++G FSG + Q+I A G L LL+PDP G++ Sbjct: 7 MFLYSLTIQPPTAVTQALLGQFSG----------TKEQQILTASGSRLTLLQPDPRQGKV 56 Query: 255 RTLLSVDVFGAIRSLA*FRLTGATKD 332 TLLS D+FG +R++A FRL G+ KD Sbjct: 57 NTLLSHDIFGIVRAIASFRLAGSHKD 82
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 69.7 bits (169), Expect = 2e-12 Identities = 37/86 (43%), Positives = 51/86 (59%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 254 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP G++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKI 56 Query: 255 RTLLSVDVFGAIRSLA*FRLTGATKD 332 + S DVFG IR+LA FRL G++KD Sbjct: 57 TPIYSQDVFGIIRTLAAFRLAGSSKD 82
>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1| Length = 1229 Score = 68.2 bits (165), Expect = 5e-12 Identities = 38/86 (44%), Positives = 51/86 (59%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 254 M+LYSL++Q + A++G FSG + Q+I A G L L RPDP G++ Sbjct: 7 MFLYSLSIQPPSTITRAILGQFSG----------TKEQQIVAASGSRLTLYRPDPTQGKV 56 Query: 255 RTLLSVDVFGAIRSLA*FRLTGATKD 332 L+S DVFG IR LA FRL G++KD Sbjct: 57 VPLMSHDVFGIIRDLASFRLAGSSKD 82
>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1| Length = 1226 Score = 67.8 bits (164), Expect = 6e-12 Identities = 37/86 (43%), Positives = 50/86 (58%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 254 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP G++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKV 56 Query: 255 RTLLSVDVFGAIRSLA*FRLTGATKD 332 L + DVFG IR+LA FRL G+ KD Sbjct: 57 IPLYTQDVFGIIRTLAAFRLAGSNKD 82
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 66.6 bits (161), Expect = 1e-11 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT-LDLLRPDPETGR 251 M+L +LTL T AV+GSFSG S +QEI RGGT L++ + + TG+ Sbjct: 1 MHLLNLTLSSPTNVSTAVVGSFSG----------SKSQEILCVRGGTKLEIFKLNATTGQ 50 Query: 252 LRTLLSVDVFGAIRSLA*FRLTGATKD 332 L T++S + FG IR++A FRL G TKD Sbjct: 51 LDTIVSTEAFGTIRNIAGFRLAGMTKD 77
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 49.7 bits (117), Expect = 2e-06 Identities = 28/87 (32%), Positives = 48/87 (55%) Frame = +3 Query: 72 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 251 ++YLY+LT++ + + +++G F G +KKS QEI +A +++L + D TG+ Sbjct: 7 SLYLYNLTIKHPSLCIASIVGQFLG--NKKS-------QEIILANSTSIELWKADSNTGK 57 Query: 252 LRTLLSVDVFGAIRSLA*FRLTGATKD 332 L + FG I+ + RL G KD Sbjct: 58 LEKIYQQASFGIIQGIDKIRLVGTQKD 84
>RSE1_SCHPO (Q9UTT2) Pre-mRNA-splicing factor rse1 (Pre-mRNA processing protein| 12) (Spliceosome associated protein 130) Length = 1206 Score = 47.4 bits (111), Expect = 9e-06 Identities = 28/87 (32%), Positives = 46/87 (52%) Frame = +3 Query: 72 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 251 +++LYSLT+Q + + S SG+ + QEI +A L + + D GR Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKA----------QEIVIATESRLLIYKVDATDGR 55 Query: 252 LRTLLSVDVFGAIRSLA*FRLTGATKD 332 + +L+ + FG IR++A RLTG +D Sbjct: 56 MNCILNQNCFGIIRNVAPLRLTGFKRD 82
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 40.8 bits (94), Expect = 8e-04 Identities = 22/76 (28%), Positives = 41/76 (53%) Frame = +3 Query: 72 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 251 ++YLY+LTL+ + + +++G F +D+ NA Q++ + TL L + E G+ Sbjct: 39 SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNA-----QQLVLVSSTTLQLFEINEEAGK 93 Query: 252 LRTLLSVDVFGAIRSL 299 L S ++ G I S+ Sbjct: 94 LELQSSQNLLGIINSI 109
>RSE1_CANGA (Q6FLQ6) Pre-mRNA-splicing factor RSE1| Length = 1296 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKK 161 M LY LTLQR + V +V GSF GRDS + Sbjct: 1 MELYHLTLQRQSNYVHSVKGSFLGRDSNE 29
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 31.2 bits (69), Expect = 0.67 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%) Frame = +3 Query: 75 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQ------------EIAVARGGTL 218 ++LY ++LQ+ V + IG F A G S + +I +A + Sbjct: 7 LHLYHVSLQKQRNYVHSCIGHFVDYRHHHIRAQGGSVEGGKKGSKWRKQLQICMATQTQV 66 Query: 219 DLLRPDPETGRLRTLLSVDVFGAIRSLA 302 +L D E GRLR L + VFG I L+ Sbjct: 67 ELY--DVEEGRLRRLFTRTVFGTITGLS 92
>NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 WW| domain-binding protein 5A) (Fragment) Length = 311 Score = 28.9 bits (63), Expect = 3.3 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = +3 Query: 105 ATGAVCAVIGSFSGRD-----SKKSNAAGSSTQEIAVA-RGGTLDLLRPDPETGRL 254 ATG+ A G GR + AA +ST+E A R G +PDPE GR+ Sbjct: 16 ATGSEAAPPGDLGGRTRGGGRGSAAAAATTSTREAEGAERRGDTPARKPDPEAGRM 71
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 28.9 bits (63), Expect = 3.3 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = +3 Query: 72 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 251 +++ Y++T Q+ T + +G+F+ A S+ EI LL P Sbjct: 2 SVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEI--------HLLSPQ----G 49 Query: 252 LRTLLSVDVFGAIRSLA*FRLTGATKD 332 L+T+L V ++G I ++ FR G +D Sbjct: 50 LQTILDVPLYGRIATMELFRPHGEAQD 76
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 28.5 bits (62), Expect = 4.4 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = +3 Query: 117 VCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDP--ETGRLRTLLSVDVFGAI 290 V A I FS + ++SN ++ +I + G +DL PD + LR LL+ F + Sbjct: 177 VLASIPGFSVKPRRRSNKKLTTAAQIEQTKDGKIDLETPDSILASTNLRALLNKQTFSLL 236 Query: 291 RSLA*FRL 314 L + L Sbjct: 237 PPLYQYNL 244
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 28.1 bits (61), Expect = 5.7 Identities = 23/87 (26%), Positives = 39/87 (44%) Frame = +3 Query: 72 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 251 +++ Y +T + T + +G+F+G A + EI LL P Sbjct: 2 SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEI--------HLLTPQG---- 49 Query: 252 LRTLLSVDVFGAIRSLA*FRLTGATKD 332 L+ +L V ++G I +L FR G T+D Sbjct: 50 LQPMLDVPIYGRIATLELFRPHGETQD 76
>PPCK_BRAJA (Q89BK7) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 538 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Frame = +3 Query: 63 GVGAMYLYSLTLQRAT----GAVCAVIGSFSGRDSKKSNAAGSSTQE 191 G +Y YSL+ A GA+CA G F+GR K +T + Sbjct: 29 GAPQLYQYSLSAGEAVLSADGALCADTGEFTGRSPKDKFTVRDATTD 75
>ARP6_ASPFU (Q4W9M3) Actin-like protein arp6| Length = 468 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 114 AVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 251 AVC V +F+G D +++ A G T+D + PDP TG+ Sbjct: 260 AVCFVSNNFAG-DLEQTWQGNRKRGLTDAAEGITVDYVLPDPNTGK 304
>GCDA_ACIFE (Q06700) Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)| (Carboxyltransferase) Length = 587 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 84 YSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT 215 + +TL++ T A V+G G D+ + + G++ EIAV G T Sbjct: 448 FEITLRKGTAAAHYVLGGPQGNDT-NAFSIGTAATEIAVMNGET 490
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/87 (24%), Positives = 38/87 (43%) Frame = +3 Query: 72 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 251 +++ Y +T + T + +G+F+G A + EI + L + P Sbjct: 2 SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQP---- 57 Query: 252 LRTLLSVDVFGAIRSLA*FRLTGATKD 332 +L V ++G I +L FR G T+D Sbjct: 58 ---MLDVPIYGRIATLELFRPHGETQD 81
>DHA1_STAAW (Q8NWQ3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 147 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 233 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAS (Q6G9C3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 147 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 233 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAR (Q6GGW9) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 147 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 233 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAN (P99151) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 147 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 233 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAM (P63478) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 147 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 233 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAC (Q5HFY4) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 147 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 233 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>RSE1_YARLI (Q6CAH5) Pre-mRNA-splicing factor RSE1| Length = 1143 Score = 27.3 bits (59), Expect = 9.7 Identities = 23/84 (27%), Positives = 36/84 (42%) Frame = +3 Query: 81 LYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRT 260 LY TL R++ A+ G FSG+ + + + G L L D +TG + Sbjct: 24 LYHSTL-RSSSPKSAICGRFSGKSQQVITLSST---------GNALYLYSHDGDTGTVTL 73 Query: 261 LLSVDVFGAIRSLA*FRLTGATKD 332 + + +R + FRL G KD Sbjct: 74 IHTHLTHCQVREIRAFRLPGLKKD 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,841,290 Number of Sequences: 219361 Number of extensions: 213540 Number of successful extensions: 824 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 813 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
