ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44c06 |
|---|---|
| Clone Library Name | barley_pub |
>JARD2_MOUSE (Q62315) Jumonji protein (Jumonji/ARID domain-containing protein 2)| Length = 1234 Score = 65.9 bits (159), Expect = 5e-11 Identities = 25/51 (49%), Positives = 36/51 (70%) Frame = +1 Query: 238 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEK 390 +D+ PV P+ +EF D + YI S+R Q EKYG+CR++PP WRP C L ++ Sbjct: 552 MDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDE 602
>JMJ2_SCHPO (Q9US53) Jumonji/ARID domain-containing protein 2| Length = 715 Score = 65.9 bits (159), Expect = 5e-11 Identities = 29/50 (58%), Positives = 34/50 (68%) Frame = +1 Query: 247 APVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 APVF P +EEF+D+IGYI I P EKYGI +IVPP+ W PP L F Sbjct: 60 APVFYPDKEEFQDSIGYINKIAPIGEKYGIIKIVPPAGWNPPMQLDMNKF 109
>JARD2_HUMAN (Q92833) Jumonji protein (Jumonji/ARID domain-containing protein 2)| Length = 1246 Score = 64.3 bits (155), Expect = 1e-10 Identities = 24/51 (47%), Positives = 36/51 (70%) Frame = +1 Query: 238 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEK 390 +D+ PV P+ +EF D + YI S+R Q EK+G+CR++PP WRP C L ++ Sbjct: 554 MDEIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLNDE 604
>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1560 Score = 62.4 bits (150), Expect = 5e-10 Identities = 26/51 (50%), Positives = 36/51 (70%) Frame = +1 Query: 244 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 + PVF P+ EF+D +GYI IRP AEK GIC+I PP+ W+PP ++ +F Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNF 63
>JAD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1554 Score = 62.4 bits (150), Expect = 5e-10 Identities = 26/51 (50%), Positives = 36/51 (70%) Frame = +1 Query: 244 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 + PVF P+ EF+D +GYI IRP AEK GIC+I PP+ W+PP ++ +F Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNF 63
>JAD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1548 Score = 62.4 bits (150), Expect = 5e-10 Identities = 26/51 (50%), Positives = 36/51 (70%) Frame = +1 Query: 244 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 + PVF P+ EF+D +GYI IRP AEK GIC+I PP+ W+PP ++ +F Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNF 63
>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)| Length = 1535 Score = 62.0 bits (149), Expect = 7e-10 Identities = 26/51 (50%), Positives = 36/51 (70%) Frame = +1 Query: 244 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 + PVF P+ EF+D +GYI IRP AEK GIC+I PP+ W+PP ++ +F Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNF 63
>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1539 Score = 62.0 bits (149), Expect = 7e-10 Identities = 26/51 (50%), Positives = 36/51 (70%) Frame = +1 Query: 244 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 + PVF P+ EF+D +GYI IRP AEK GIC+I PP+ W+PP ++ +F Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNF 63
>JAD1A_HUMAN (P29375) Jumonji/ARID domain-containing protein 1A| (Retinoblastoma-binding protein 2) (RBBP-2) Length = 1722 Score = 61.2 bits (147), Expect = 1e-09 Identities = 27/51 (52%), Positives = 34/51 (66%) Frame = +1 Query: 244 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 + PVF P+ EEF D + +I IRP AEK GIC+I PP W+PP + KSF Sbjct: 18 ECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPPFACEVKSF 68
>YJ89_YEAST (P47156) Hypothetical 85.0 kDa protein in STE24-ATP2 intergenic| region Length = 728 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Frame = +1 Query: 238 IDDAPVFTPTEEEFKDAIGYITS--IRPQAEKYGICRIVPPSSWRPPCPLKEKSF 396 +++ P PTE+EFK+ I Y+++ I+ +YG+ ++VPP+ + PP + ++F Sbjct: 1 MEEIPALYPTEQEFKNPIDYLSNPHIKRLGVRYGMVKVVPPNGFCPPLSIDMENF 55
>RPH1_YEAST (P39956) DNA damage-responsive transcriptional repressor RPH1| Length = 796 Score = 41.6 bits (96), Expect = 0.001 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 238 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWR 366 + PVF PT E+F+D Y +I K G+ +++PP W+ Sbjct: 11 VGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWK 53
>JHD3B_DROME (Q9V6L0) Probable JmjC domain-containing histone demethylation| protein 3B (EC 1.14.11.-) Length = 452 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 235 EIDDAPVFTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 E+ VF PT EEFKD Y+ + Q A K G+ ++VPP W P Sbjct: 5 EVPRIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVP 50
>JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1096 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F PT EEFKD Y+ I Q A + G+ +I+PP W+P Sbjct: 18 FRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKP 56
>JHD3D_MOUSE (Q3U2K5) JmjC domain-containing histone demethylation protein 3D| (EC 1.14.11.-) (Jumonji domain-containing protein 2D) Length = 510 Score = 38.5 bits (88), Expect = 0.008 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 253 VFTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWR 366 +F PT+EEF D YI + Q A + G+ +++PP WR Sbjct: 17 IFRPTKEEFNDFDKYIAYMESQGAHRAGLAKVIPPKEWR 55
>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1086 Score = 38.5 bits (88), Expect = 0.008 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F PT +EF+D Y+ I Q A + G+ +I+PP W+P Sbjct: 18 FRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKP 56
>JHD3A_PONPY (Q5RD88) JmjC domain-containing histone demethylation protein 3A| (EC 1.14.11.-) (Jumonji domain-containing protein 2A) Length = 1064 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F PT EEF++ YI I Q A + G+ ++VPP W+P Sbjct: 17 FYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 55
>JHD3A_MOUSE (Q8BW72) JmjC domain-containing histone demethylation protein 3A| (EC 1.14.11.-) (Jumonji domain-containing protein 2A) Length = 1064 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F PT EEF++ YI I Q A + G+ ++VPP W+P Sbjct: 17 FYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 55
>JHD3A_HUMAN (O75164) JmjC domain-containing histone demethylation protein 3A| (EC 1.14.11.-) (Jumonji domain-containing protein 2A) Length = 1064 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F PT EEF++ YI I Q A + G+ ++VPP W+P Sbjct: 17 FYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 55
>MSC1_SCHPO (Q9UT79) Multicopy suppressor of chk1 protein 1| Length = 1588 Score = 37.7 bits (86), Expect = 0.013 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +1 Query: 259 TPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRPPCPLKEKSF 396 TP +EEF + +I+ + Q A K G R++PP +W+ P + +F Sbjct: 86 TPKKEEFSRGLDFISDLYDQTARKSGAVRVIPPDNWKCPLTINTTTF 132
>JHD3D_HUMAN (Q6B0I6) JmjC domain-containing histone demethylation protein 3D| (EC 1.14.11.-) (Jumonji domain-containing protein 2D) Length = 520 Score = 37.4 bits (85), Expect = 0.017 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 253 VFTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWR 366 +F PT+EEF D YI + Q A + G+ +I+PP W+ Sbjct: 17 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 55
>GIS1_YEAST (Q03833) Transcriptional activator/repressor GIS1| Length = 894 Score = 33.5 bits (75), Expect = 0.25 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 238 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSW 363 ID PVF P+ EF + +I I + GI +++PP W Sbjct: 9 IDGVPVFKPSMMEFANFQYFIDEITKFGIENGIVKVIPPKEW 50
>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) (Gene amplified in squamous cell carcinoma 1 protein) (GASC-1 protein) Length = 1056 Score = 33.1 bits (74), Expect = 0.33 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F P+ EEF++ Y+ + + A + G+ +++PP W+P Sbjct: 19 FRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKP 57
>JHD3C_MOUSE (Q8VCD7) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) Length = 1054 Score = 33.1 bits (74), Expect = 0.33 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F P+ EEF++ Y+ + + A + G+ +++PP W+P Sbjct: 19 FRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKP 57
>JHD3_CAEEL (Q9U297) JmjC domain-containing histone demethylation protein 3 (EC| 1.14.11.-) (ceJMJD2) Length = 894 Score = 32.0 bits (71), Expect = 0.73 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQAE--KYGICRIVPPSSWRPPCPLKEKSFWNCTELT 417 F PT EFK+ YI I K GI +IV P W P K+ S + E+T Sbjct: 90 FYPTMREFKNFSQYIKKIEQNGGHLKAGIAKIVAPEGWTPRPTRKDFSDVDDYEIT 145
>JMJ3_SCHPO (O94691) Lid2 complex component jmj3 (Lid2C component jmj3)| Length = 752 Score = 31.6 bits (70), Expect = 0.95 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 241 DDAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSS 360 D PV P EF D +I + +KYG ++V PSS Sbjct: 32 DGIPVVEPKISEFVDMESFIRRVERLGKKYGAIKVVRPSS 71
>JHD3A_DROME (Q9V333) Probable JmjC domain-containing histone demethylation| protein 3A (EC 1.14.11.-) Length = 495 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +1 Query: 256 FTPTEEEFKDAIGYITSIRPQ-AEKYGICRIVPPSSWRP 369 F P+ EEF++ YI I + A G+ +I PP+ W P Sbjct: 21 FRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVP 59
>ITA7_MOUSE (Q61738) Integrin alpha-7 precursor [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1179 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 305 LVMYPIASLNSSSVGVKTGASSISGLFDSSGCHFPYVCDGPAAEAGS 165 +V+ P L +VG+K+ S+SG D G H+P + G A+ + Sbjct: 465 VVVKPSQVLEGEAVGIKSFGYSLSGGLDVDGNHYPDLLVGSLADTAA 511
>Y7141_STRCO (Q9FBV0) Putative NADH dehydrogenase/NAD(P)H nitroreductase SCO7141| (EC 1.-.-.-) Length = 202 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 211 HPDESNRPEIDDAPVFT--PTEEEFKDAIGYITSIRPQAEKY 330 H DE NRP+ APV + F + + ++ +RP+ ++Y Sbjct: 74 HLDEGNRPKSASAPVVAVLAVDHRFHEHLPHVLPVRPEMKEY 115
>ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1106 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -1 Query: 305 LVMYPIASLNSSSVGVKTGASSISGLFDSSGCHFPYVCDGPAAEAGS 165 +V P L +VG+K+ S+SG D G H+P + G A+ + Sbjct: 393 VVTKPSQVLEGEAVGIKSFGYSLSGGLDVDGNHYPDLLVGSLADTAA 439
>DPO42_METMA (Q8PT42) DNA polymerase IV 2 (EC 2.7.7.7) (Pol IV 2)| Length = 369 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 229 RPEIDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGICRIVPPSSWRPPCP 378 RPE+ + PV ++ + G +++ +A KYGI +P S CP Sbjct: 34 RPELKNLPVIVGSDPKGGSGRGVVSTCSYEARKYGIHSAMPISQAYRFCP 83
>CHCH5_HUMAN (Q9BSY4) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 5 Length = 110 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +1 Query: 316 QAEKYGICRIVPPSSWRPPCPLKEKSFWNCTELTP 420 + E+YG C P SW+ C + S CT P Sbjct: 15 ELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHP 49
>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2124 Score = 28.9 bits (63), Expect = 6.2 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -1 Query: 368 GLQEDGGTIRQIPYFSA*GRMLVMYPIASLNSSSVGVKTGASSISGLFDSSG 213 G + G I P FS + +A ++ GV+TG+S SG FD SG Sbjct: 1510 GAIDSSGLISPTPEFSG-----LPSGVAEVSGEVSGVETGSSLSSGAFDGSG 1556
>AROC_LEGPL (Q5WUE6) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 352 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +1 Query: 226 NRPEIDDAPVFTPTEEEFKDAIGYITSIRPQAEKYG 333 N EID P F P ++ ++ Y+ +R Q + G Sbjct: 169 NENEIDKNPFFCPNNKQIQELADYVDRLRRQGDSVG 204
>ISOA_PSEUM (P26501) Isoamylase precursor (EC 3.2.1.68)| Length = 776 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%) Frame = -3 Query: 375 TWWSPR------RWWNNTTN-SIFFCLRTNASNVSNCIFEFLLGWSKN 253 TW+ P +WNNT+N +I + + + SN I+ GWS + Sbjct: 670 TWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSS 717
>ISOA_PSEAY (P10342) Isoamylase precursor (EC 3.2.1.68)| Length = 776 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%) Frame = -3 Query: 375 TWWSPR------RWWNNTTN-SIFFCLRTNASNVSNCIFEFLLGWSKN 253 TW+ P +WNNT+N +I + + + SN I+ GWS + Sbjct: 670 TWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSS 717 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,904,713 Number of Sequences: 219361 Number of extensions: 1064099 Number of successful extensions: 3068 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3006 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3061 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
