ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HS101_ORYSA (Q6F2Y7) Heat shock protein 101 38 0.008
2HS101_ARATH (P42730) Heat shock protein 101 32 0.42
3FUS_SV5 (P04849) Fusion glycoprotein F0 precursor [Contains: Fus... 29 3.6
4TRPA1_CAEEL (Q18297) Transient receptor potential cation channel... 28 4.7
5E2F2_HUMAN (Q14209) Transcription factor E2F2 (E2F-2) 28 6.1

>HS101_ORYSA (Q6F2Y7) Heat shock protein 101|
          Length = 912

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +1

Query: 115 MNPDKFTHKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSGILRQAIAHA 273
           MNPD FTHKTN                             D+ GILRQAI+ A
Sbjct: 1   MNPDNFTHKTNEALVAAHEIASEAGHAQLTPLHLVAALAADKGGILRQAISQA 53



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>HS101_ARATH (P42730) Heat shock protein 101|
          Length = 911

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +1

Query: 115 MNPDKFTHKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSGILRQAIAHA 273
           MNP+KFTHKTN                             D +GI  QAI+ A
Sbjct: 1   MNPEKFTHKTNETIATAHELAVNAGHAQFTPLHLAGALISDPTGIFPQAISSA 53



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>FUS_SV5 (P04849) Fusion glycoprotein F0 precursor [Contains: Fusion|
           glycoprotein F2; Fusion glycoprotein F1]
          Length = 529

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 128 LSGFMVSASASYGLTATKLAMVIGRDLWVRRFALVSFSRRK 6
           +SG  +++ +SY  T TKL   IG +L   R  L+   RR+
Sbjct: 61  ISGCNITSISSYNATVTKLLQPIGENLETIRNQLIPTRRRR 101



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>TRPA1_CAEEL (Q18297) Transient receptor potential cation channel subfamily A|
           member 1 homolog
          Length = 1193

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 97  ATD*LRQNWQW*LGGICGF 41
           AT  +RQNWQW L  +C F
Sbjct: 907 ATSGVRQNWQWILAALCIF 925



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>E2F2_HUMAN (Q14209) Transcription factor E2F2 (E2F-2)|
          Length = 437

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 26  PRRIFEPTNPSQSPLPVLSQLIRSSQKRKP 115
           P  + EP +PS+ PLP  S L  S    +P
Sbjct: 304 PEEVQEPDSPSEEPLPSTSTLCPSPDSAQP 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,491,233
Number of Sequences: 219361
Number of extensions: 428734
Number of successful extensions: 1455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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