ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44c03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF174433.1| Triticum aestivum heat shock protein 101 (HSP101c) mRNA, complete cds Length = 3058 Score = 385 bits (194), Expect = e-104 Identities = 218/226 (96%) Strand = Plus / Plus Query: 50 aatccctcccaatcaccattgccagttttgtcgcagttaatccgtagctcgcagaagcgg 109 |||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||| Sbjct: 29 aatcccccccaatcgccattgccagttccgttgcagttaatccgtagctcgcagaagcgg 88 Query: 110 aaaccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacg 169 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 aagccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacg 148 Query: 170 agatggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcg 229 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 149 agatggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgcggcgctcg 208 Query: 230 cggcggacaggtcgggcatcctccgccaggccattgcccacgcgtc 275 |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 209 cggcggacaggtcgggcatcctccgccaggccatcgcccacgcgtc 254
>emb|AJ970536.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101c-B gene) Length = 1881 Score = 248 bits (125), Expect = 8e-63 Identities = 137/141 (97%) Strand = Plus / Plus Query: 135 gcacaagaccaatgaggcgctcgcggcggcgcacgagatggcgtccgaggccggccacgc 194 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1 gcacaagaccaacgaggcgctcgcggcggcgcacgagatggcgtccgaggccggccatgc 60 Query: 195 gcagctcacgccgctgcacctcgccgccgcgctcgcggcggacaggtcgggcatcctccg 254 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 61 gcagctcacgccgctgcacctcgccgcggcgctcgcggcggacaggtcgggcatcctccg 120 Query: 255 ccaggccattgcccacgcgtc 275 ||||||||| ||||||||||| Sbjct: 121 ccaggccatcgcccacgcgtc 141
>emb|AJ970535.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101c-A gene) Length = 1881 Score = 248 bits (125), Expect = 8e-63 Identities = 137/141 (97%) Strand = Plus / Plus Query: 135 gcacaagaccaatgaggcgctcgcggcggcgcacgagatggcgtccgaggccggccacgc 194 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1 gcacaagaccaacgaggcgctcgcggcggcgcacgagatggcgtccgaggccggccaccc 60 Query: 195 gcagctcacgccgctgcacctcgccgccgcgctcgcggcggacaggtcgggcatcctccg 254 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 61 gcagctcacgccgctgcacctcgccgcggcgctcgcggcggacaggtcgggcatcctccg 120 Query: 255 ccaggccattgcccacgcgtc 275 ||||||||| ||||||||||| Sbjct: 121 ccaggccatcgcccacgcgtc 141
>gb|AF097363.1| Triticum aestivum heat shock protein 101 (Hsp101b) mRNA, complete cds Length = 3107 Score = 168 bits (85), Expect = 6e-39 Identities = 133/149 (89%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 ||||||| || ||||| ||||||||||||||||| |||||||| | ||||||||||||| Sbjct: 110 ccatgaacccggacaacttcacgcacaagaccaacgaggcgctggtggcggcgcacgagg 169 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 |||||| |||||||||||||||||| |||||||||||||||| || || ||||| |||| Sbjct: 170 cggcgtcggaggccggccacgcgcagatcacgccgctgcacctggcggcggcgctggcgg 229 Query: 233 cggacaggtcgggcatcctccgccaggcc 261 |||||| |||||||||||| ||||||||| Sbjct: 230 cggacaagtcgggcatcctgcgccaggcc 258
>gb|AF083344.2|AF083344 Triticum aestivum heat shock protein 101 kDa (HSP101) mRNA, complete cds Length = 2821 Score = 153 bits (77), Expect = 3e-34 Identities = 131/149 (87%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 ||||||| || ||||| ||||||||||||||||| |||||||| | ||||||||||||| Sbjct: 63 ccatgaacccggacaacttcacgcacaagaccaacgaggcgctggtggcggcgcacgagg 122 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 |||||| |||||||||||||||||| |||||||| ||||||| || || ||||| |||| Sbjct: 123 cggcgtcggaggccggccacgcgcagatcacgccgttgcacctggcggcggcgctggcgg 182 Query: 233 cggacaggtcgggcatcctccgccaggcc 261 |||||| |||||||||||| || |||||| Sbjct: 183 cggacaagtcgggcatcctgcggcaggcc 211
>emb|AJ970534.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101b-B gene) Length = 1423 Score = 147 bits (74), Expect = 2e-32 Identities = 113/126 (89%) Strand = Plus / Plus Query: 135 gcacaagaccaatgaggcgctcgcggcggcgcacgagatggcgtccgaggccggccacgc 194 |||||||||||| |||||||| | ||||||||||||| |||||| |||||||||||||| Sbjct: 1 gcacaagaccaacgaggcgctggtggcggcgcacgaggcggcgtcggaggccggccacgc 60 Query: 195 gcagctcacgccgctgcacctcgccgccgcgctcgcggcggacaggtcgggcatcctccg 254 |||| |||||||||||||||| || || ||||| ||||||||||||||||||||||| || Sbjct: 61 gcagatcacgccgctgcacctggcggcggcgctggcggcggacaggtcgggcatcctgcg 120 Query: 255 ccaggc 260 ||||| Sbjct: 121 gcaggc 126
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 139 bits (70), Expect = 5e-30 Identities = 112/126 (88%) Strand = Plus / Minus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 123082 ccatgaatccggacaacttcacgcacaagaccaacgaggcgctcgtggcggcgcacgaga 123023 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||||| ||||| || ||||||||||| |||||||||||||| | || ||||| |||| Sbjct: 123022 tagcgtcggaggcggggcacgcgcagctgacgccgctgcacctggtggcggcgctggcgg 122963 Query: 233 cggaca 238 |||||| Sbjct: 122962 cggaca 122957
>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07, complete sequence Length = 147122 Score = 139 bits (70), Expect = 5e-30 Identities = 112/126 (88%) Strand = Plus / Minus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 19044 ccatgaatccggacaacttcacgcacaagaccaacgaggcgctcgtggcggcgcacgaga 18985 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||||| ||||| || ||||||||||| |||||||||||||| | || ||||| |||| Sbjct: 18984 tagcgtcggaggcggggcacgcgcagctgacgccgctgcacctggtggcggcgctggcgg 18925 Query: 233 cggaca 238 |||||| Sbjct: 18924 cggaca 18919
>emb|AJ316025.1|OSA316025 Oryza sativa hsp101 gene for heat shock protein 101, exons 1-5 Length = 3109 Score = 139 bits (70), Expect = 5e-30 Identities = 112/126 (88%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1 ccatgaatccggacaacttcacgcacaagaccaacgaggcgctcgtggcggcgcacgaga 60 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||||| ||||| || ||||||||||| |||||||||||||| | || ||||| |||| Sbjct: 61 tagcgtcggaggcggggcacgcgcagctgacgccgctgcacctggtggcggcgctggcgg 120 Query: 233 cggaca 238 |||||| Sbjct: 121 cggaca 126
>gb|AF332981.1|AF332981 Oryza sativa heat shock protein (HSP101) mRNA, complete cds Length = 3148 Score = 139 bits (70), Expect = 5e-30 Identities = 112/126 (88%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 133 ccatgaatccggacaacttcacgcacaagaccaacgaggcgctcgtggcggcgcacgaga 192 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||||| ||||| || ||||||||||| |||||||||||||| | || ||||| |||| Sbjct: 193 tagcgtcggaggcggggcacgcgcagctgacgccgctgcacctggtggcggcgctggcgg 252 Query: 233 cggaca 238 |||||| Sbjct: 253 cggaca 258
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 139 bits (70), Expect = 5e-30 Identities = 112/126 (88%) Strand = Plus / Minus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 25606675 ccatgaatccggacaacttcacgcacaagaccaacgaggcgctcgtggcggcgcacgaga 25606616 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||||| ||||| || ||||||||||| |||||||||||||| | || ||||| |||| Sbjct: 25606615 tagcgtcggaggcggggcacgcgcagctgacgccgctgcacctggtggcggcgctggcgg 25606556 Query: 233 cggaca 238 |||||| Sbjct: 25606555 cggaca 25606550
>dbj|AK105433.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F05, full insert sequence Length = 3163 Score = 139 bits (70), Expect = 5e-30 Identities = 112/126 (88%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 188 ccatgaatccggacaacttcacgcacaagaccaacgaggcgctcgtggcggcgcacgaga 247 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||||| ||||| || ||||||||||| |||||||||||||| | || ||||| |||| Sbjct: 248 tagcgtcggaggcggggcacgcgcagctgacgccgctgcacctggtggcggcgctggcgg 307 Query: 233 cggaca 238 |||||| Sbjct: 308 cggaca 313
>dbj|AK100903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131M05, full insert sequence Length = 3132 Score = 139 bits (70), Expect = 5e-30 Identities = 112/126 (88%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 135 ccatgaatccggacaacttcacgcacaagaccaacgaggcgctcgtggcggcgcacgaga 194 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||||| ||||| || ||||||||||| |||||||||||||| | || ||||| |||| Sbjct: 195 tagcgtcggaggcggggcacgcgcagctgacgccgctgcacctggtggcggcgctggcgg 254 Query: 233 cggaca 238 |||||| Sbjct: 255 cggaca 260
>emb|AJ970533.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101b-A gene) Length = 1423 Score = 133 bits (67), Expect = 3e-28 Identities = 112/127 (88%) Strand = Plus / Plus Query: 135 gcacaagaccaatgaggcgctcgcggcggcgcacgagatggcgtccgaggccggccacgc 194 |||||||||||| |||||||| | ||||||||||||| |||||| |||||||||||||| Sbjct: 1 gcacaagaccaacgaggcgctggtggcggcgcacgaggcggcgtcggaggccggccacgc 60 Query: 195 gcagctcacgccgctgcacctcgccgccgcgctcgcggcggacaggtcgggcatcctccg 254 |||| |||||||| ||||||| || || ||||| |||||||||| |||||||||||| || Sbjct: 61 gcagatcacgccgttgcacctggcggcggcgctggcggcggacaagtcgggcatcctgcg 120 Query: 255 ccaggcc 261 |||||| Sbjct: 121 gcaggcc 127
>gb|AY485529.1| Zea mays heat shock protein HSP101 (HSP101) mRNA, complete cds Length = 2861 Score = 117 bits (59), Expect = 2e-23 Identities = 128/151 (84%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||| |||||||| || |||||| ||| || ||||||||||| Sbjct: 113 ccatgaatccggacaacttcacccacaagacgaacgaggcgatcgtgggggcgcacgaga 172 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||| ||||||||||||||||||||||||||||||||||| ||||| | ||| || | Sbjct: 173 ttgcggtggaggccggccacgcgcagctcacgccgctgcacctggccgcagtgctggctg 232 Query: 233 cggacaggtcgggcatcctccgccaggccat 263 |||||| | |||||||| || |||||||| Sbjct: 233 cggacaagggcggcatcctgcggcaggccat 263
>gb|AF133840.1|AF133840 Zea mays heat shock protein HSP101 (HSP101) mRNA, complete cds Length = 3084 Score = 117 bits (59), Expect = 2e-23 Identities = 128/151 (84%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||| |||||||| || |||||| ||| || ||||||||||| Sbjct: 143 ccatgaatccggacaacttcacccacaagacgaacgaggcgatcgtgggggcgcacgaga 202 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||| ||||||||||||||||||||||||||||||||||| ||||| | ||| || | Sbjct: 203 ttgcggtggaggccggccacgcgcagctcacgccgctgcacctggccgcagtgctggctg 262 Query: 233 cggacaggtcgggcatcctccgccaggccat 263 |||||| | |||||||| || |||||||| Sbjct: 263 cggacaagggcggcatcctgcggcaggccat 293
>gb|AF077337.2| Zea mays heat shock protein 101 (HSP101) gene, complete cds Length = 3945 Score = 117 bits (59), Expect = 2e-23 Identities = 128/151 (84%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||| |||||||| || |||||| ||| || ||||||||||| Sbjct: 437 ccatgaatccggacaacttcacccacaagacgaacgaggcgatcgtgggggcgcacgaga 496 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||| ||||||||||||||||||||||||||||||||||| ||||| | ||| || | Sbjct: 497 ttgcggtggaggccggccacgcgcagctcacgccgctgcacctggccgcagtgctggctg 556 Query: 233 cggacaggtcgggcatcctccgccaggccat 263 |||||| | |||||||| || |||||||| Sbjct: 557 cggacaagggcggcatcctgcggcaggccat 587
>gb|AY109444.1| Zea mays CL1518_1 mRNA sequence Length = 3163 Score = 95.6 bits (48), Expect = 7e-17 Identities = 124/151 (82%) Strand = Plus / Plus Query: 113 ccatgaatcccgacaagttcacgcacaagaccaatgaggcgctcgcggcggcgcacgaga 172 |||||||||| ||||| ||||| |||||||| || |||||| ||| ||||||||| Sbjct: 152 ccatgaatccggacaacttcacccacaagacgaacgaggcgatcgtnnnnncgcacgaga 211 Query: 173 tggcgtccgaggccggccacgcgcagctcacgccgctgcacctcgccgccgcgctcgcgg 232 | ||| ||||||||||||||||||||||||||||||||||| ||||| | ||| || | Sbjct: 212 ttgcggtggaggccggccacgcgcagctcacgccgctgcacctggccgcagtgctggctg 271 Query: 233 cggacaggtcgggcatcctccgccaggccat 263 |||||| | |||||||| || |||||||| Sbjct: 272 cggacaagggcggcatcctgcggcaggccat 302
>ref|XM_465522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2337 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 190 cacgcgcagctcacgccgctgcac 213 |||||||||||||||||||||||| Sbjct: 94 cacgcgcagctcacgccgctgcac 117
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Minus Query: 190 cacgcgcagctcacgccgctgcac 213 |||||||||||||||||||||||| Sbjct: 15718684 cacgcgcagctcacgccgctgcac 15718661 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cacctcgccgccgcgctcgc 230 |||||||||||||||||||| Sbjct: 44654 cacctcgccgccgcgctcgc 44673
>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24 Length = 176446 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Minus Query: 190 cacgcgcagctcacgccgctgcac 213 |||||||||||||||||||||||| Sbjct: 127371 cacgcgcagctcacgccgctgcac 127348
>ref|XM_481010.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3126 Score = 46.1 bits (23), Expect = 0.058 Identities = 26/27 (96%) Strand = Plus / Plus Query: 201 cacgccgctgcacctcgccgccgcgct 227 ||||||||||||| ||||||||||||| Sbjct: 105 cacgccgctgcacgtcgccgccgcgct 131
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.058 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 cacgccgctgcacctcgccgccgcgct 227 ||||||||||||| ||||||||||||| Sbjct: 9221663 cacgccgctgcacgtcgccgccgcgct 9221637
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 46.1 bits (23), Expect = 0.058 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 cacgccgctgcacctcgccgccgcgct 227 ||||||||||||| ||||||||||||| Sbjct: 32876 cacgccgctgcacgtcgccgccgcgct 32850
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 cctcgccgccgcgctcgcggcg 234 |||||||||||||||||||||| Sbjct: 279808 cctcgccgccgcgctcgcggcg 279787
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 44.1 bits (22), Expect = 0.23 Identities = 31/34 (91%) Strand = Plus / Minus Query: 186 cggccacgcgcagctcacgccgctgcacctcgcc 219 ||||||||||||| |||||||||| ||| ||||| Sbjct: 47148 cggccacgcgcaggtcacgccgctccacgtcgcc 47115
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.23 Identities = 31/34 (91%) Strand = Plus / Plus Query: 186 cggccacgcgcagctcacgccgctgcacctcgcc 219 ||||||||||||| |||||||||| ||| ||||| Sbjct: 2679650 cggccacgcgcaggtcacgccgctccacgtcgcc 2679683 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 cacgccgctgcacctcgccgc 221 ||||||||||||||||||||| Sbjct: 13532714 cacgccgctgcacctcgccgc 13532694
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 cacgccgctgcacctcgccgcc 222 |||||||||||||||||||||| Sbjct: 5094540 cacgccgctgcacctcgccgcc 5094561 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 cacgccgctgcacctcgccgcc 222 |||||||||||||||||||||| Sbjct: 5062996 cacgccgctgcacctcgccgcc 5063017
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 cacgccgctgcacctcgccgcc 222 |||||||||||||||||||||| Sbjct: 136229 cacgccgctgcacctcgccgcc 136250 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 cacgccgctgcacctcgccgcc 222 |||||||||||||||||||||| Sbjct: 104685 cacgccgctgcacctcgccgcc 104706
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_E12 Length = 119691 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 cacgccgctgcacctcgccgcc 222 |||||||||||||||||||||| Sbjct: 50707 cacgccgctgcacctcgccgcc 50728 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 cacgccgctgcacctcgccgcc 222 |||||||||||||||||||||| Sbjct: 19163 cacgccgctgcacctcgccgcc 19184
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.23 Identities = 31/34 (91%) Strand = Plus / Plus Query: 186 cggccacgcgcagctcacgccgctgcacctcgcc 219 ||||||||||||| |||||||||| ||| ||||| Sbjct: 2688681 cggccacgcgcaggtcacgccgctccacgtcgcc 2688714 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 cacgccgctgcacctcgccgc 221 ||||||||||||||||||||| Sbjct: 13612893 cacgccgctgcacctcgccgc 13612873
>ref|NM_191054.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 939 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 cctcgccgccgcgctcgcggc 233 ||||||||||||||||||||| Sbjct: 363 cctcgccgccgcgctcgcggc 383
>gb|AC133931.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013M05 map C3, complete sequence Length = 131117 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 cacgccgctgcacctcgccgc 221 ||||||||||||||||||||| Sbjct: 117273 cacgccgctgcacctcgccgc 117253
>gb|AC145320.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041K10 map near E50283S, complete sequence Length = 140651 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 cacgccgctgcacctcgccgc 221 ||||||||||||||||||||| Sbjct: 23950 cacgccgctgcacctcgccgc 23930
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 42.1 bits (21), Expect = 0.91 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 cgccgccgcgctcgcggcggacaggtcgg 244 ||||||||||| |||||||| |||||||| Sbjct: 127418 cgccgccgcgcacgcggcgggcaggtcgg 127446
>emb|AJ243600.1|RSP243600 Rhodobacter sphaeroides cheY4 and mcpG genes Length = 3407 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 ccgaggccggccacgcgcagc 199 ||||||||||||||||||||| Sbjct: 33 ccgaggccggccacgcgcagc 13
>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432B10 Length = 131918 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 cctcgccgccgcgctcgcggc 233 ||||||||||||||||||||| Sbjct: 16264 cctcgccgccgcgctcgcggc 16284
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 0.91 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 tcacgccgctgcacctcgccgccgc 224 ||||||||||||||||||| ||||| Sbjct: 1171909 tcacgccgctgcacctcgctgccgc 1171933
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 cctcgccgccgcgctcgcggc 233 ||||||||||||||||||||| Sbjct: 34518970 cctcgccgccgcgctcgcggc 34518990
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0425G02 Length = 155432 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 cctcgccgccgcgctcgcggc 233 ||||||||||||||||||||| Sbjct: 94689 cctcgccgccgcgctcgcggc 94709
>dbj|AK107118.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B02, full insert sequence Length = 1367 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 cctcgccgccgcgctcgcggc 233 ||||||||||||||||||||| Sbjct: 550 cctcgccgccgcgctcgcggc 570
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gcacctcgccgccgcgctcg 229 |||||||||||||||||||| Sbjct: 955014 gcacctcgccgccgcgctcg 954995
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gccggccacgcgcagctcacgccg 207 |||||||| ||||||||||||||| Sbjct: 1518576 gccggccatgcgcagctcacgccg 1518599
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 tcgccgccgcgctcgcggcg 234 |||||||||||||||||||| Sbjct: 3176564 tcgccgccgcgctcgcggcg 3176545
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gccgccgcgctcgcggcgga 236 |||||||||||||||||||| Sbjct: 3049009 gccgccgcgctcgcggcgga 3049028
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cacctcgccgccgcgctcgc 230 |||||||||||||||||||| Sbjct: 153774 cacctcgccgccgcgctcgc 153755
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgccgccgcgctcgcggcgg 235 |||||||||||||||||||| Sbjct: 1588595 cgccgccgcgctcgcggcgg 1588614 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgccgccgcgctcgcggcgg 235 |||||||||||||||||||| Sbjct: 759740 cgccgccgcgctcgcggcgg 759721 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 gctgcacctcgccgccgcgctcgc 230 ||||||||||| |||||||||||| Sbjct: 283104 gctgcacctcggcgccgcgctcgc 283081
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tcgccgccgcgctcgcggcg 234 |||||||||||||||||||| Sbjct: 1624350 tcgccgccgcgctcgcggcg 1624369
>emb|BX927186.21| Zebrafish DNA sequence from clone DKEY-29H4 in linkage group 17, complete sequence Length = 197409 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctcacgccgctgcacctcgc 218 |||||||||||||||||||| Sbjct: 81196 ctcacgccgctgcacctcgc 81215
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ccgccgcgctcgcggcggacaggt 241 |||||||||||||||||| ||||| Sbjct: 305874 ccgccgcgctcgcggcgggcaggt 305897
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgccgccgcgctcgcggcgg 235 |||||||||||||||||||| Sbjct: 2923909 cgccgccgcgctcgcggcgg 2923928 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgccgccgcgctcgcggcgg 235 |||||||||||||||||||| Sbjct: 2080074 cgccgccgcgctcgcggcgg 2080055 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 gctgcacctcgccgccgcgctcgc 230 ||||||||||| |||||||||||| Sbjct: 1608899 gctgcacctcggcgccgcgctcgc 1608876
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tcgccgccgcgctcgcggcg 234 |||||||||||||||||||| Sbjct: 1511474 tcgccgccgcgctcgcggcg 1511493
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cacgcgcagctcacgccgct 209 |||||||||||||||||||| Sbjct: 825959 cacgcgcagctcacgccgct 825978
>gb|AC005970.3| Arabidopsis thaliana chromosome 2 clone T6P5 map mi310, complete sequence Length = 121160 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gaatcttcgaacccacaaat 52 |||||||||||||||||||| Sbjct: 67726 gaatcttcgaacccacaaat 67745
>ref|XM_681232.1| PREDICTED: Danio rerio similar to ankyrin 3 (LOC558063), mRNA Length = 4723 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctcacgccgctgcacctcgc 218 |||||||||||||||||||| Sbjct: 2219 ctcacgccgctgcacctcgc 2238
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gcacctcgccgccgcgctcg 229 |||||||||||||||||||| Sbjct: 791032 gcacctcgccgccgcgctcg 791013
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgccgccgcgctcgcggcgg 235 |||||||||||||||||||| Sbjct: 2143225 cgccgccgcgctcgcggcgg 2143244 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgccgccgcgctcgcggcgg 235 |||||||||||||||||||| Sbjct: 1654412 cgccgccgcgctcgcggcgg 1654393
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cacctcgccgccgcgctcgc 230 |||||||||||||||||||| Sbjct: 19826507 cacctcgccgccgcgctcgc 19826488
>emb|BX469921.4| Zebrafish DNA sequence from clone CH211-57C17 in linkage group 5, complete sequence Length = 186820 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 ctcacgccgctgcacctcgc 218 |||||||||||||||||||| Sbjct: 45944 ctcacgccgctgcacctcgc 45925
>gb|AF279904.1|AF279904 Nocardia asteroides class A beta-lactamase AST-1 (bla) gene, complete cds Length = 1763 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ctcgccgccgcgctcgcggc 233 |||||||||||||||||||| Sbjct: 208 ctcgccgccgcgctcgcggc 227
>gb|AY924210.1| Uncultured bacterium topoisomerase IB gene, complete cds Length = 2110 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 acctcgccgccgcgctcgcg 231 |||||||||||||||||||| Sbjct: 1685 acctcgccgccgcgctcgcg 1704
>gb|AE004816.1| Pseudomonas aeruginosa PAO1, section 377 of 529 of the complete genome Length = 12667 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tcgccgccgcgctcgcggcg 234 |||||||||||||||||||| Sbjct: 6353 tcgccgccgcgctcgcggcg 6372
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 gcacctcgccgccgcgctcg 229 |||||||||||||||||||| Sbjct: 7010696 gcacctcgccgccgcgctcg 7010715
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cacctcgccgccgcgctcgc 230 |||||||||||||||||||| Sbjct: 50947 cacctcgccgccgcgctcgc 50928
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cacctcgccgccgcgctcgc 230 |||||||||||||||||||| Sbjct: 172193 cacctcgccgccgcgctcgc 172174
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cacctcgccgccgcgctcgc 230 |||||||||||||||||||| Sbjct: 39263 cacctcgccgccgcgctcgc 39282
>ref|NM_209496.1| Eremothecium gossypii ADR047Wp (ADR047W), mRNA Length = 1122 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gcacctcgccgccgcgctcg 229 |||||||||||||||||||| Sbjct: 256 gcacctcgccgccgcgctcg 237
>gb|AF038595.1|AF038595 Pseudomonas aeruginosa apolipoprotein N-acyltransferase (cutE) gene, complete cds Length = 2272 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tcgccgccgcgctcgcggcg 234 |||||||||||||||||||| Sbjct: 1639 tcgccgccgcgctcgcggcg 1658
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 tcgccgccgcgctcgcggcg 234 |||||||||||||||||||| Sbjct: 2004973 tcgccgccgcgctcgcggcg 2004954 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgccgccgcgctcgcggcgg 235 |||||||||||||||||||| Sbjct: 988525 cgccgccgcgctcgcggcgg 988544
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gagatggcgtccgaggccgg 188 |||||||||||||||||||| Sbjct: 1130380 gagatggcgtccgaggccgg 1130399
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gctcgcggcggcgcacgaga 172 |||||||||||||||||||| Sbjct: 44784 gctcgcggcggcgcacgaga 44803 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,698,375 Number of Sequences: 3902068 Number of extensions: 1698375 Number of successful extensions: 46155 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42580 Number of HSP's gapped (non-prelim): 3572 length of query: 275 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 253 effective length of database: 17,147,199,772 effective search space: 4338241542316 effective search space used: 4338241542316 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
