ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kin... 31 1.0
2SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing prote... 29 3.9
3SAMD6_RAT (P0C0T2) Sterile alpha motif domain-containing protein... 29 5.1
4P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150... 28 6.7

>M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kinase 10 (EC|
           2.7.11.25) (Mixed lineage kinase 2) (Protein kinase MST)
          Length = 954

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -1

Query: 417 KATPVAARTSWTGRGSTKTSPKAVISTGPRMPAARSAAVTRGATRQGLASGGS 259
           K T  A+ T    +GS   SP A  S  PR+ A R   V  G +  G +SGGS
Sbjct: 483 KITVQASPTLDKRKGSDGASPPASPSIIPRLRAIRLTPVDCGGSSSGSSSGGS 535



to top

>SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing protein 6|
          Length = 883

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 420 EKATPVAARTSWTGRGSTKTSPKAVISTGPRMPAARSAAVTRGATRQGLASGGS 259
           +K  P     S T   S  TSP    S  P+   A S+  +  + RQ  +SGGS
Sbjct: 712 KKLDPSKRPPSGTSATSKSTSPTLTPSPSPKGHTAESSVSSSSSHRQSKSSGGS 765



to top

>SAMD6_RAT (P0C0T2) Sterile alpha motif domain-containing protein 6|
           (Polycystic kidney disease protein 1) (SamCystin)
          Length = 871

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 420 EKATPVAARTSWTGRGSTKTSPKAVISTGPRMPAARSAAVTRGATRQGLASGGS 259
           +K  P     S T   S  TSP    S  P+   A S+  +  + RQ  +SGGS
Sbjct: 714 KKLDPGKRPPSGTSATSKSTSPTLTPSPSPKGHTAESSVSSSSSHRQSKSSGGS 767



to top

>P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150 kDa matrix|
           phosphoprotein) (Basic phosphoprotein) (BPP) (Tegument
           protein UL32)
          Length = 1048

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 372 STKTSPKAVISTGPRMPAARSAAVTRGATR 283
           +T T+ +  +ST PR P+   AAVT+ A+R
Sbjct: 663 TTSTASQNTVSTTPRRPSTPRAAVTQTASR 692


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.123    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,264,760
Number of Sequences: 219361
Number of extensions: 351389
Number of successful extensions: 1090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
to top