Clone Name | bastl44c01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 259 gatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggca 318 |||||||||||| ||||| || | ||||| |||||| |||| || | ||||| ||||| Sbjct: 4820085 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 4820144 Query: 319 acgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctg 378 || |||||||||||||| ||||| ||||| || || ||||||||||| ||| ||||||| Sbjct: 4820145 gcggggcatcgacgtggtgctcaacgaggagtcgaagcgggagacccccgccgtcgtctg 4820204 Query: 379 ctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaaccc 438 ||| |||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 4820205 cttcggcgacaagcagcgcttcatcggcaccgcgggggccgcgtcctccaccatgaaccc 4820264 Query: 439 ca-caactccatctcacagatcaagcgc 465 | |||||| |||| |||||||||||| Sbjct: 4820265 taggaactccgtctcccagatcaagcgc 4820292
>dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113E02, full insert sequence Length = 3137 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 259 gatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggca 318 |||||||||||| ||||| || | ||||| |||||| |||| || | ||||| ||||| Sbjct: 183 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 242 Query: 319 acgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctg 378 || |||||||||||||| ||||| ||||| || || ||||||||||| ||| ||||||| Sbjct: 243 gcggggcatcgacgtggtgctcaacgaggagtcgaagcgggagacccccgccgtcgtctg 302 Query: 379 ctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaaccc 438 ||| |||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 303 cttcggcgacaagcagcgcttcatcggcaccgcgggggccgcgtcctccaccatgaaccc 362 Query: 439 ca-caactccatctcacagatcaagcgc 465 | |||||| |||| |||||||||||| Sbjct: 363 taggaactccgtctcccagatcaagcgc 390
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 259 gatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggca 318 |||||||||||| ||||| || | ||||| |||||| |||| || | ||||| ||||| Sbjct: 92493 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 92552 Query: 319 acgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctg 378 || |||||||||||||| ||||| ||||| || || ||||||||||| ||| ||||||| Sbjct: 92553 gcggggcatcgacgtggtgctcaacgaggagtcgaagcgggagacccccgccgtcgtctg 92612 Query: 379 ctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaaccc 438 ||| |||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 92613 cttcggcgacaagcagcgcttcatcggcaccgcgggggccgcgtcctccaccatgaaccc 92672 Query: 439 ca-caactccatctcacagatcaagcgc 465 | |||||| |||| |||||||||||| Sbjct: 92673 taggaactccgtctcccagatcaagcgc 92700
>ref|NM_189556.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3139 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 257 aagatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacgg 316 |||||||||||||| || |||||| |||| || |||||||||||||||| || || ||| Sbjct: 212 aagatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcgg 271 Query: 317 caacgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtc 376 || || ||||| || ||||| ||||| ||||| || || |||||||| || || || ||| Sbjct: 272 cagcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtc 331 Query: 377 tgctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaac 436 ||||| |||||||||||||| |||||||| || || |||||||| |||||| |||||| Sbjct: 332 tgcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaac 391 Query: 437 cc 438 || Sbjct: 392 cc 393
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 257 aagatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacgg 316 |||||||||||||| || |||||| |||| || |||||||||||||||| || || ||| Sbjct: 4253481 aagatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcgg 4253540 Query: 317 caacgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtc 376 || || ||||| || ||||| ||||| ||||| || || |||||||| || || || ||| Sbjct: 4253541 cagcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtc 4253600 Query: 377 tgctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaac 436 ||||| |||||||||||||| |||||||| || || |||||||| |||||| |||||| Sbjct: 4253601 tgcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaac 4253660 Query: 437 cc 438 || Sbjct: 4253661 cc 4253662
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 257 aagatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacgg 316 |||||||||||||| || |||||| |||| || |||||||||||||||| || || ||| Sbjct: 91448 aagatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcgg 91507 Query: 317 caacgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtc 376 || || ||||| || ||||| ||||| ||||| || || |||||||| || || || ||| Sbjct: 91508 cagcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtc 91567 Query: 377 tgctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaac 436 ||||| |||||||||||||| |||||||| || || |||||||| |||||| |||||| Sbjct: 91568 tgcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaac 91627 Query: 437 cc 438 || Sbjct: 91628 cc 91629
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 257 aagatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacgg 316 |||||||||||||| || |||||| |||| || |||||||||||||||| || || ||| Sbjct: 33251 aagatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcgg 33310 Query: 317 caacgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtc 376 || || ||||| || ||||| ||||| ||||| || || |||||||| || || || ||| Sbjct: 33311 cagcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtc 33370 Query: 377 tgctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaac 436 ||||| |||||||||||||| |||||||| || || |||||||| |||||| |||||| Sbjct: 33371 tgcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaac 33430 Query: 437 cc 438 || Sbjct: 33431 cc 33432
>dbj|AK100676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113C17, full insert sequence Length = 3139 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 257 aagatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacgg 316 |||||||||||||| || |||||| |||| || |||||||||||||||| || || ||| Sbjct: 212 aagatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcgg 271 Query: 317 caacgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtc 376 || || ||||| || ||||| ||||| ||||| || || |||||||| || || || ||| Sbjct: 272 cagcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtc 331 Query: 377 tgctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaac 436 ||||| |||||||||||||| |||||||| || || |||||||| |||||| |||||| Sbjct: 332 tgcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaac 391 Query: 437 cc 438 || Sbjct: 392 cc 393
>dbj|AK059244.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G02, full insert sequence Length = 1164 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 257 aagatgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacgg 316 |||||||||||||| || |||||| |||| || |||||||||||||||| || || ||| Sbjct: 158 aagatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcgg 217 Query: 317 caacgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtc 376 || || ||||| || ||||| ||||| ||||| || || |||||||| || || || ||| Sbjct: 218 cagcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtc 277 Query: 377 tgctttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaac 436 ||||| |||||||||||||| |||||||| || || |||||||| |||||| |||||| Sbjct: 278 tgcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaac 337 Query: 437 cc 438 || Sbjct: 338 cc 339
>ref|NM_106642.3| Arabidopsis thaliana HSP91 AT1G79930 (HSP91) transcript variant AT1G79930.1 mRNA, complete cds Length = 2949 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 326 atcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgctttggc 385 |||||||| || || ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct: 217 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 276 Query: 386 gacaagcagcgcttcatcggcactgcaggcgctgc 420 |||||||||||||||||||||||||| || ||||| Sbjct: 277 gacaagcagcgcttcatcggcactgctggagctgc 311
>ref|NM_001036228.1| Arabidopsis thaliana HSP91 AT1G79930 (HSP91) transcript variant AT1G79930.2 mRNA, complete cds Length = 3012 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 326 atcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgctttggc 385 |||||||| || || ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct: 261 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 320 Query: 386 gacaagcagcgcttcatcggcactgcaggcgctgc 420 |||||||||||||||||||||||||| || ||||| Sbjct: 321 gacaagcagcgcttcatcggcactgctggagctgc 355
>gb|AY079015.1| Arabidopsis thaliana At1g79930/F19K16_11 mRNA, complete cds Length = 2798 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 326 atcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgctttggc 385 |||||||| || || ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct: 217 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 276 Query: 386 gacaagcagcgcttcatcggcactgcaggcgctgc 420 |||||||||||||||||||||||||| || ||||| Sbjct: 277 gacaagcagcgcttcatcggcactgctggagctgc 311
>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence Length = 111301 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 326 atcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgctttggc 385 |||||||| || || ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct: 37179 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 37238 Query: 386 gacaagcagcgcttcatcggcactgcaggcgctgc 420 |||||||||||||||||||||||||| || ||||| Sbjct: 37239 gacaagcagcgcttcatcggcactgctggagctgc 37273 Score = 73.8 bits (37), Expect = 5e-10 Identities = 167/209 (79%), Gaps = 1/209 (0%) Strand = Plus / Plus Query: 260 atgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggcaa 319 ||||| || ||||| |||||||| || ||||||| ||| |||| | || ||| ||||| Sbjct: 41956 atgagtgtagttggttttgattttggaaacgagaattgccttgttgctgttgcaaggcaa 42015 Query: 320 cgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgc 379 | || |||||||| || || ||||| || || || || ||||| || || ||||| ||| Sbjct: 42016 agaggtatcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgc 42075 Query: 380 tttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaacccc 439 ||||| |||||||||||||||||||| ||||| || ||||| ||| ||||||||| Sbjct: 42076 tttggtgacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaacccc 42135 Query: 440 -acaactccatctcacagatcaagcgctt 467 | |||||||||||||| ||||||||||| Sbjct: 42136 aaaaactccatctcacaaatcaagcgctt 42164
>gb|BT002625.1| Arabidopsis thaliana At1g79930/F19K16_11 gene, complete cds Length = 2496 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 326 atcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgctttggc 385 |||||||| || || ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct: 67 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 126 Query: 386 gacaagcagcgcttcatcggcactgcaggcgctgc 420 |||||||||||||||||||||||||| || ||||| Sbjct: 127 gacaagcagcgcttcatcggcactgctggagctgc 161
>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence Length = 116905 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 326 atcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgctttggc 385 |||||||| || || ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct: 3765 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 3706 Query: 386 gacaagcagcgcttcatcggcactgcaggcgctgc 420 |||||||||||||||||||||||||| || ||||| Sbjct: 3705 gacaagcagcgcttcatcggcactgctggagctgc 3671
>ref|NM_180653.1| Arabidopsis thaliana ATP binding AT1G79920 transcript variant AT1G79920.1 mRNA, complete cds Length = 2941 Score = 73.8 bits (37), Expect = 5e-10 Identities = 167/209 (79%), Gaps = 1/209 (0%) Strand = Plus / Plus Query: 260 atgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggcaa 319 ||||| || ||||| |||||||| || ||||||| ||| |||| | || ||| ||||| Sbjct: 144 atgagtgtagttggttttgattttggaaacgagaattgccttgttgctgttgcaaggcaa 203 Query: 320 cgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgc 379 | || |||||||| || || ||||| || || || || ||||| || || ||||| ||| Sbjct: 204 agaggtatcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgc 263 Query: 380 tttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaacccc 439 ||||| |||||||||||||||||||| ||||| || ||||| ||| ||||||||| Sbjct: 264 tttggtgacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaacccc 323 Query: 440 -acaactccatctcacagatcaagcgctt 467 | |||||||||||||| ||||||||||| Sbjct: 324 aaaaactccatctcacaaatcaagcgctt 352
>ref|NM_106641.3| Arabidopsis thaliana ATP binding AT1G79920 transcript variant AT1G79920.2 mRNA, complete cds Length = 2941 Score = 73.8 bits (37), Expect = 5e-10 Identities = 167/209 (79%), Gaps = 1/209 (0%) Strand = Plus / Plus Query: 260 atgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggcaa 319 ||||| || ||||| |||||||| || ||||||| ||| |||| | || ||| ||||| Sbjct: 144 atgagtgtagttggttttgattttggaaacgagaattgccttgttgctgttgcaaggcaa 203 Query: 320 cgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgc 379 | || |||||||| || || ||||| || || || || ||||| || || ||||| ||| Sbjct: 204 agaggtatcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgc 263 Query: 380 tttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaacccc 439 ||||| |||||||||||||||||||| ||||| || ||||| ||| ||||||||| Sbjct: 264 tttggtgacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaacccc 323 Query: 440 -acaactccatctcacagatcaagcgctt 467 | |||||||||||||| ||||||||||| Sbjct: 324 aaaaactccatctcacaaatcaagcgctt 352
>gb|BT000810.1| Arabidopsis thaliana At1g79920 mRNA sequence Length = 2952 Score = 73.8 bits (37), Expect = 5e-10 Identities = 167/209 (79%), Gaps = 1/209 (0%) Strand = Plus / Plus Query: 260 atgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggcaa 319 ||||| || ||||| |||||||| || ||||||| ||| |||| | || ||| ||||| Sbjct: 137 atgagtgtagttggttttgattttggaaacgagaattgccttgttgctgttgcaaggcaa 196 Query: 320 cgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgc 379 | || |||||||| || || ||||| || || || || ||||| || || ||||| ||| Sbjct: 197 agaggtatcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgc 256 Query: 380 tttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaacccc 439 ||||| |||||||||||||||||||| ||||| || ||||| ||| ||||||||| Sbjct: 257 tttggtgacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaacccc 316 Query: 440 -acaactccatctcacagatcaagcgctt 467 | |||||||||||||| ||||||||||| Sbjct: 317 aaaaactccatctcacaaatcaagcgctt 345
>gb|AY065177.1| Arabidopsis thaliana putative heat-shock protein (At1g79920; F19K16.12) mRNA, complete cds Length = 2850 Score = 73.8 bits (37), Expect = 5e-10 Identities = 167/209 (79%), Gaps = 1/209 (0%) Strand = Plus / Plus Query: 260 atgagcgtggttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggcaa 319 ||||| || ||||| |||||||| || ||||||| ||| |||| | || ||| ||||| Sbjct: 144 atgagtgtagttggttttgattttggaaacgagaattgccttgttgctgttgcaaggcaa 203 Query: 320 cgtggcatcgacgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgc 379 | || |||||||| || || ||||| || || || || ||||| || || ||||| ||| Sbjct: 204 agaggtatcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgc 263 Query: 380 tttggcgacaagcagcgcttcatcggcactgcaggcgctgccaactccaccatgaacccc 439 ||||| |||||||||||||||||||| ||||| || ||||| ||| ||||||||| Sbjct: 264 tttggtgacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaacccc 323 Query: 440 -acaactccatctcacagatcaagcgctt 467 | |||||||||||||| ||||||||||| Sbjct: 324 aaaaactccatctcacaaatcaagcgctt 352
>emb|Z70314.1|ATHSP91 A.thaliana mRNA for heat-shock protein Length = 2923 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 270 ttgggtttgatttaggcaacgagagctgcattgtgggggtggcacggcaacgtggcatcg 329 ||||||||||||| || ||||||| ||| |||| | || ||| ||||| | || |||| Sbjct: 164 ttgggtttgatttcggaaacgagaattgccttgttgccgttgcaaggcaaagaggtatcg 223 Query: 330 acgtggttctcaatgaggaatccaaacgggagacccctgccatcgtctgctttggcgaca 389 |||| || || ||||| || ||||| || ||||| ||||| || |||||||| || |||| Sbjct: 224 acgtcgtgcttaatgatgagtccaatcgtgagacgcctgctattgtctgcttcggtgaca 283 Query: 390 agcagcgcttcatcggcactgcaggcgctgc 420 | ||||||||||||||||||| || ||||| Sbjct: 284 acgagcgcttcatcggcactgctggagctgc 314
>ref|XM_806602.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508613.20) partial mRNA Length = 2214 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 caaaggaagaagaagacccgc 41 ||||||||||||||||||||| Sbjct: 1582 caaaggaagaagaagacccgc 1562
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 426 ccaccatgaaccccacaactc 446 ||||||||||||||||||||| Sbjct: 358091 ccaccatgaaccccacaactc 358111
>gb|AC127340.4| Mus musculus BAC clone RP23-188M2 from chromosome 18, complete sequence Length = 210649 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 gaacattcaggagccctctcaaag 25 ||||||||||||||| |||||||| Sbjct: 57781 gaacattcaggagccttctcaaag 57804
>gb|AC130545.4| Mus musculus chromosome 18 clone RP24-297E18, complete sequence Length = 156144 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 gaacattcaggagccctctcaaag 25 ||||||||||||||| |||||||| Sbjct: 11033 gaacattcaggagccttctcaaag 11056
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gcggccacaccggcaccacc 59 |||||||||||||||||||| Sbjct: 122069 gcggccacaccggcaccacc 122088
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gcggccacaccggcaccacc 59 |||||||||||||||||||| Sbjct: 56005 gcggccacaccggcaccacc 55986
>gb|AE012420.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 328 of 460 of the complete genome Length = 13708 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 ccgcggccacaccggcaccaccac 61 ||||||| |||||||||||||||| Sbjct: 11849 ccgcggcaacaccggcaccaccac 11872
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 agatcaagcgcttgctgggc 474 |||||||||||||||||||| Sbjct: 440572 agatcaagcgcttgctgggc 440553
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 ccgcggccacaccggcaccaccac 61 ||||||| |||||||||||||||| Sbjct: 1325183 ccgcggcaacaccggcaccaccac 1325160
>emb|AJ557002.1|DIN557002 Davidia involucrata partial rpb2 gene for RNA polymerase II second largest subunit, exons 11-22 Length = 2613 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgtggcatcgacgtggttct 339 |||||||||||||||||||| Sbjct: 578 cgtggcatcgacgtggttct 597
>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete sequence Length = 219412 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gctgccaactccaccatgaa 435 |||||||||||||||||||| Sbjct: 206310 gctgccaactccaccatgaa 206291
>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccctctcaaaggaagaagaa 34 |||||||||||||||||||| Sbjct: 10622 ccctctcaaaggaagaagaa 10603
>dbj|AP001429.2| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T1212, LB7T-ERG region, complete sequences Length = 85691 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccctctcaaaggaagaagaa 34 |||||||||||||||||||| Sbjct: 62077 ccctctcaaaggaagaagaa 62058
>dbj|AP000150.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 2/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccctctcaaaggaagaagaa 34 |||||||||||||||||||| Sbjct: 80039 ccctctcaaaggaagaagaa 80020
>dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 2/13 Length = 152345 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccctctcaaaggaagaagaa 34 |||||||||||||||||||| Sbjct: 80039 ccctctcaaaggaagaagaa 80020
>dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 clone: T1212 and T1601, complete sequence Length = 110174 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ccctctcaaaggaagaagaa 34 |||||||||||||||||||| Sbjct: 62073 ccctctcaaaggaagaagaa 62054 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,495,055 Number of Sequences: 3902068 Number of extensions: 4495055 Number of successful extensions: 67890 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67596 Number of HSP's gapped (non-prelim): 287 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)