Clone Information

BLAST Search Result

Clone Name	bastl44b12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHD1_YEAST (P32657) Chromo domain protein 1 (EC 3.6.1.-) (ATP-de...	102	3e-22
2	HRP3_SCHPO (O14139) Chromodomain helicase hrp3 (EC 3.6.1.-) (ATP...	98	5e-21
3	HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP...	92	4e-19
4	CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 ...	88	5e-18
5	CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 ...	82	5e-16
6	CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 ...	81	6e-16
7	CHD3_CAEEL (Q22516) Chromodomain helicase-DNA-binding protein 3 ...	81	8e-16
8	PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE ...	77	9e-15
9	CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 ...	77	2e-14
10	CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 ...	77	2e-14
11	CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 ...	74	8e-14
12	CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 ...	73	2e-13
13	BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dep...	72	3e-13
14	CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 ...	71	6e-13
15	CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 ...	70	1e-12
16	CHD7_HUMAN (Q9P2D1) Chromodomain-helicase-DNA-binding protein 7 ...	67	9e-12
17	SMCA4_HUMAN (P51532) Probable global transcription activator SNF...	67	1e-11
18	STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (EC 3.6.1.-) (ATP-...	67	2e-11
19	CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 ...	66	2e-11
20	CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 ...	65	4e-11
21	SNF21_SCHPO (Q9UTN6) SNF2-family ATP dependent chromatin remodel...	65	6e-11
22	INO80_DEBHA (Q6BGY8) Putative DNA helicase INO80 (EC 3.6.1.-)	65	6e-11
23	ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain i...	64	1e-10
24	SMCA2_HUMAN (P51531) Probable global transcription activator SNF...	64	1e-10
25	ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain I...	63	2e-10
26	INO80_ASHGO (Q74Z27) Putative DNA helicase INO80 (EC 3.6.1.-)	63	2e-10
27	CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 ...	62	5e-10
28	SMCA1_HUMAN (P28370) Probable global transcription activator SNF...	62	5e-10
29	CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi...	62	5e-10
30	INO80_CANAL (Q59KI4) Putative DNA helicase INO80 (EC 3.6.1.-)	61	9e-10
31	SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodel...	61	9e-10
32	INO80_YEAST (P53115) Putative DNA helicase INO80 (EC 3.6.1.-) (I...	61	9e-10
33	INO80_KLULA (Q6CNY4) Putative DNA helicase INO80 (EC 3.6.1.-)	61	9e-10
34	SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3....	60	1e-09
35	INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)	59	4e-09
36	INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)	58	7e-09
37	SWR1_EMENI (Q5ARK3) Helicase swr1 (EC 3.6.1.-)	57	1e-08
38	INO80_CANGA (Q6FV37) Putative DNA helicase INO80 (EC 3.6.1.-)	57	1e-08
39	INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)	57	2e-08
40	SMCA5_MOUSE (Q91ZW3) SWI/SNF-related matrix-associated actin-dep...	56	2e-08
41	INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)	56	3e-08
42	YFK8_YEAST (P43610) Hypothetical ATP-dependent helicase YFR038W ...	55	4e-08
43	SMCA5_HUMAN (O60264) SWI/SNF-related matrix-associated actin-dep...	55	5e-08
44	INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)	54	8e-08
45	ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain I...	54	8e-08
46	SWR1_CRYNE (Q5K8T2) Helicase SWR1 (EC 3.6.1.-)	54	1e-07
47	SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)	54	1e-07
48	SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)	52	3e-07
49	INO80_CRYNE (Q5KHM0) Putative DNA helicase INO80 (EC 3.6.1.-)	51	7e-07
50	SWR1_SCHPO (O13682) Helicase swr1 (EC 3.6.1.-)	51	9e-07
51	SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)	50	1e-06
52	SWR1_CANGA (Q6FK48) Helicase SWR1 (EC 3.6.1.-)	50	2e-06
53	SWR1_CANAL (Q59U81) Helicase SWR1 (EC 3.6.1.-)	50	2e-06
54	ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPas...	49	3e-06
55	SWR1_USTMA (Q4P328) Helicase SWR1 (EC 3.6.1.-)	49	3e-06
56	ISW2_ARATH (Q8RWY3) Putative chromatin remodelling complex ATPas...	49	3e-06
57	SWR1_KLULA (Q6CJ38) Helicase SWR1 (EC 3.6.1.-)	49	4e-06
58	SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-)	48	6e-06
59	SWR1_DEBHA (Q6BKC2) Helicase SWR1 (EC 3.6.1.-)	48	8e-06
60	SWR1_YEAST (Q05471) Helicase SWR1 (EC 3.6.1.-) (Swi2/Snf2-relate...	47	2e-05
61	SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)	47	2e-05
62	RAD54_HUMAN (Q92698) DNA repair and recombination protein RAD54-...	45	6e-05
63	RAD54_MOUSE (P70270) DNA repair and recombination protein RAD54-...	43	2e-04
64	SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dep...	43	2e-04
65	MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 ...	42	4e-04
66	EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400...	41	7e-04
67	MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-ass...	41	7e-04
68	SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dep...	40	0.002
69	EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400...	39	0.003
70	RAD26_YEAST (P40352) DNA repair and recombination protein RAD26 ...	39	0.005
71	RA54B_HUMAN (Q9Y620) DNA repair and recombination protein RAD54B...	39	0.005
72	TTF2_DROME (P34739) Transcription termination factor 2 (EC 3.6.1...	37	0.013
73	Y020_MYCPN (P75093) Hypothetical ATP-dependent helicase MPN020 (...	36	0.023
74	RA54B_MOUSE (Q6PFE3) DNA repair and recombination protein RAD54B...	35	0.039
75	RA54B_CHICK (Q9DG67) DNA repair and recombination protein RAD54B...	35	0.039
76	RAD54_SCHPO (P41410) DNA repair protein rhp54 (EC 3.6.1.-) (RAD5...	35	0.039
77	YFC1_SCHPO (O42861) Probable ATP-dependent helicase C25A8.01c in...	35	0.051
78	ERCC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (EC 3.6....	35	0.051
79	SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dep...	35	0.067
80	RAD54_CHICK (O12944) DNA repair and recombination protein RAD54-...	35	0.067
81	RAD54_YEAST (P32863) DNA repair and recombination protein RAD54 ...	34	0.087
82	BTAF1_HUMAN (O14981) TATA-binding protein-associated factor 172 ...	34	0.087
83	YAB9_YEAST (P31380) Hypothetical 128.5 kDa ATP-dependent helicas...	33	0.15
84	GTA_NPVAC (P41447) Probable global transactivator (EC 3.6.1.-) (...	33	0.19
85	SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated ...	32	0.56
86	Y018_MYCGE (P47264) Hypothetical ATP-dependent helicase MG018 (E...	32	0.56
87	SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated ...	31	0.74
88	SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dep...	30	2.1
89	SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dep...	30	2.1
90	RS26B_SCHPO (Q9UTG4) 40S ribosomal protein S26-B	30	2.1
91	REP_BUCAI (P57654) ATP-dependent DNA helicase rep (EC 3.6.1.-)	29	2.8
92	TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1...	29	2.8
93	SPOT_SPICI (O34098) Guanosine-3',5'-bis(diphosphate) 3'-pyrophos...	29	3.7
94	HELX_SULSO (P95949) Putative ATP-dependent helicase SSO0112 (EC ...	29	3.7
95	RS26A_SCHPO (Q9UT56) 40S ribosomal protein S26-A	28	6.2
96	TTF2_HUMAN (Q9UNY4) Transcription termination factor 2 (EC 3.6.1...	28	6.2
97	TNFL4_RAT (Q9Z2P3) Tumor necrosis factor ligand superfamily memb...	28	6.2
98	YQHH_BACSU (P54509) Hypothetical ATP-dependent helicase yqhH (EC...	28	6.2
99	ARGR_BACSK (Q5WF65) Arginine repressor	28	8.2

>CHD1_YEAST (P32657) Chromo domain protein 1 (EC 3.6.1.-) (ATP-dependent|
           helicase CHD1)
          Length = 1468

 Score =  102 bits (253), Expect = 3e-22
 Identities = 46/84 (54%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNK--KGGRHVKFHTLITTYEVILKDKAVLSKI 175
           KW PD+N + Y+GN+ SR+  +++EF+TN   KG + +KF+ L+TTYE ILKD+A L  I
Sbjct: 446 KWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSI 505

Query: 176 KWSYLMVDEAHRLKNSEASLYIAL 247
           KW ++ VDEAHRLKN+E+SLY +L
Sbjct: 506 KWQFMAVDEAHRLKNAESSLYESL 529

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>HRP3_SCHPO (O14139) Chromodomain helicase hrp3 (EC 3.6.1.-) (ATP-dependent|
           helicase hrp3)
          Length = 1388

 Score = 98.2 bits (243), Expect = 5e-21
 Identities = 44/81 (54%), Positives = 62/81 (76%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184
           W  DMN + Y+GN  SR++ + +EF+ +  G + +KF+ L+TTYE +LKD++VLS IKW 
Sbjct: 446 WASDMNCISYLGNTTSRQVIRDYEFYVD--GTQKIKFNLLLTTYEYVLKDRSVLSNIKWQ 503

Query: 185 YLMVDEAHRLKNSEASLYIAL 247
           Y+ +DEAHRLKNSE+SLY AL
Sbjct: 504 YMAIDEAHRLKNSESSLYEAL 524

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>HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP-dependent|
           helicase hrp1)
          Length = 1373

 Score = 92.0 bits (227), Expect = 4e-19
 Identities = 43/81 (53%), Positives = 57/81 (70%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184
           W PD+N + Y GN  SR   +++EF+ +    R +KF+ L+TTYE ILKDK  L+ I+W 
Sbjct: 461 WTPDLNSICYTGNTESRANIREYEFYLSTNS-RKLKFNILLTTYEYILKDKQELNNIRWQ 519

Query: 185 YLMVDEAHRLKNSEASLYIAL 247
           YL +DEAHRLKNSE+SLY  L
Sbjct: 520 YLAIDEAHRLKNSESSLYETL 540

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>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD2) (CHD-2)
          Length = 1739

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 39/83 (46%), Positives = 61/83 (73%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184
           W P++NVV+Y+G+  SR   +++E+  ++   + +KF+ LITTYE++LKDK VL  I W+
Sbjct: 555 WAPEINVVVYIGDLMSRNTIREYEWIHSQT--KRLKFNALITTYEILLKDKTVLGSINWA 612

Query: 185 YLMVDEAHRLKNSEASLYIALLE 253
           +L VDEAHRLKN ++ LY  L++
Sbjct: 613 FLGVDEAHRLKNDDSLLYKTLID 635

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>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD1) (CHD-1)
          Length = 1709

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 37/83 (44%), Positives = 58/83 (69%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184
           W   MN V+Y+G+  SR M + HE+  ++   + +KF+ L+TTYE++LKDKA L  + W+
Sbjct: 552 WASQMNAVVYLGDINSRNMIRTHEWTHHQT--KRLKFNILLTTYEILLKDKAFLGGLNWA 609

Query: 185 YLMVDEAHRLKNSEASLYIALLE 253
           ++ VDEAHRLKN ++ LY  L++
Sbjct: 610 FIGVDEAHRLKNDDSLLYKTLID 632

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>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD1) (CHD-1)
          Length = 1711

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 37/83 (44%), Positives = 57/83 (68%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184
           W   MN V+Y+G+  SR M + HE+   +   + +KF+ L+TTYE++LKDKA L  + W+
Sbjct: 550 WASQMNAVVYLGDINSRNMIRTHEWMHPQT--KRLKFNILLTTYEILLKDKAFLGGLNWA 607

Query: 185 YLMVDEAHRLKNSEASLYIALLE 253
           ++ VDEAHRLKN ++ LY  L++
Sbjct: 608 FIGVDEAHRLKNDDSLLYKTLID 630

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>CHD3_CAEEL (Q22516) Chromodomain helicase-DNA-binding protein 3 homolog|
           (CHD-3)
          Length = 1787

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 12/95 (12%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEF-FTNK--KGG---------RHVKFHTLITTYEVIL 148
           W PD  VV YVG+R SR + ++HEF F +   +GG          ++KFH L+T+YE I 
Sbjct: 687 WCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECIN 746

Query: 149 KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLE 253
            DKA+LS I W+ L+VDEAHRLKN++++ +  L E
Sbjct: 747 MDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLRE 781

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>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)|
           (Protein GYMNOS)
          Length = 1384

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 16/99 (16%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNK--------KGG--------RHVKFHTLITTY 136
           W P MNVV+Y G   +R + ++HEF+ +K        K G        + +KF  L+T+Y
Sbjct: 342 WAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSY 401

Query: 137 EVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLE 253
           E+I  D AVL  IKW  ++VDE HRLKN ++ L+ +L +
Sbjct: 402 EMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQ 440

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>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen
            218 kDa protein) (Mi2-beta)
          Length = 1912

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 12/93 (12%)
 Frame = +2

Query: 5    WLPDMNVVIYVGNRASREMCQQHEFFTNK---KGGRH---------VKFHTLITTYEVIL 148
            W PDM VV YVG++ SR + +++EF       +GG+          VKFH L+T+YE+I 
Sbjct: 797  WAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT 856

Query: 149  KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
             D A+L  I W+ L+VDEAHRLKN+++  +  L
Sbjct: 857  IDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 889

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>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)|
          Length = 1915

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 12/93 (12%)
 Frame = +2

Query: 5    WLPDMNVVIYVGNRASREMCQQHEFFTNK---KGGRH---------VKFHTLITTYEVIL 148
            W PDM VV YVG++ SR + +++EF       +GG+          VKFH L+T+YE+I 
Sbjct: 790  WAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT 849

Query: 149  KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
             D A+L  I W+ L+VDEAHRLKN+++  +  L
Sbjct: 850  IDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 882

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>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD5) (CHD-5)
          Length = 1954

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 12/93 (12%)
 Frame = +2

Query: 5    WLPDMNVVIYVGNRASREMCQQHEFF-------TNKKGGR-----HVKFHTLITTYEVIL 148
            W PD  VV Y G++ SR + +++EF        + KK  R      +KFH L+T+YE+I 
Sbjct: 771  WAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT 830

Query: 149  KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
             D+A+L  I+W+ L+VDEAHRLKN+++  +  L
Sbjct: 831  IDQAILGSIEWACLVVDEAHRLKNNQSKFFRVL 863

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>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen
            240 kDa protein) (Mi2-alpha) (Zinc-finger helicase)
            (hZFH)
          Length = 2000

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 12/93 (12%)
 Frame = +2

Query: 5    WLPDMNVVIYVGNRASREMCQQHEFFTNK---KGGR---------HVKFHTLITTYEVIL 148
            W P   VV Y G++ SR + +++EF       KGG+          VKFH L+T+YE+I 
Sbjct: 807  WAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 866

Query: 149  KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
             D+A L  I+W+ L+VDEAHRLKN+++  +  L
Sbjct: 867  IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 899

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>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent helicase|
            brm) (Protein brahma)
          Length = 1638

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 34/78 (43%), Positives = 47/78 (60%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P + VV Y G+   R + Q           R  KF+ L+TTYE ++KDKAVL+KI+W
Sbjct: 843  KWAPAVGVVSYKGSPQGRRLLQNQM--------RATKFNVLLTTYEYVIKDKAVLAKIQW 894

Query: 182  SYLMVDEAHRLKNSEASL 235
             Y+++DE HR+KN    L
Sbjct: 895  KYMIIDEGHRMKNHHCKL 912

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>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD8) (CHD-8) (Helicase with
           SNF2 domain 1)
          Length = 2302

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
 Frame = +2

Query: 14  DMNVVIYVGNRASREMCQQHEFFTNKKGGRHV----KFHTLITTYEVILKDKAVLSKIKW 181
           +MN ++Y G+ ASR+M QQ+E +     GR +    KF  LITT+E+IL D   L +I+W
Sbjct: 604 EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEW 663

Query: 182 SYLMVDEAHRLKNSEASLYIAL 247
             +++DEAHRLKN    L  +L
Sbjct: 664 RCVIIDEAHRLKNRNCKLLDSL 685

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>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
           gene B protein)
          Length = 2715

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +2

Query: 14  DMNVVIYVGNRASREMCQQHEFFTNKKGGRHV----KFHTLITTYEVILKDKAVLSKIKW 181
           +MN ++Y G++ SR+M QQ+E       G  +    KFH +ITT+E+IL D   L KI W
Sbjct: 533 EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHW 592

Query: 182 SYLMVDEAHRLKNSEASL 235
           S +++DEAHRLKN    L
Sbjct: 593 SCVIIDEAHRLKNRNCKL 610

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>CHD7_HUMAN (Q9P2D1) Chromodomain-helicase-DNA-binding protein 7 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD7) (CHD-7) (Fragment)
          Length = 2235

 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
 Frame = +2

Query: 14  DMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK----FHTLITTYEVILKDKAVLSKIKW 181
           ++NVV+Y G++ASR   Q +E +     GR +K    FH +ITT+E+IL D   L  I W
Sbjct: 278 ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPW 337

Query: 182 SYLMVDEAHRLKNSEASL 235
             +++DEAHRLKN    L
Sbjct: 338 RCVVIDEAHRLKNRNCKL 355

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>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC 3.6.1.-)|
            (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1
            protein) (Mitotic growth and transcription activator)
            (Brahma protein homolog 1) (SWI/SNF-related
            matrix-associated actin
          Length = 1647

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 34/78 (43%), Positives = 47/78 (60%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P +  V Y G+ A+R       F    + G   KF+ L+TTYE I+KDK +L+KI+W
Sbjct: 824  KWAPSVVKVSYKGSPAARRA-----FVPQLRSG---KFNVLLTTYEYIIKDKHILAKIRW 875

Query: 182  SYLMVDEAHRLKNSEASL 235
             Y++VDE HR+KN    L
Sbjct: 876  KYMIVDEGHRMKNHHCKL 893

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>STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (EC 3.6.1.-) (ATP-dependent|
           helicase STH1) (Chromatin structure remodeling complex
           protein STH1) (SNF2 homolog)
          Length = 1359

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 32/78 (41%), Positives = 48/78 (61%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KW P +N +IY G    R   Q H+        R   F  L+TTYE I+KDK++LSK  W
Sbjct: 540 KWAPSLNTIIYKGTPNQRHSLQ-HQI-------RVGNFDVLLTTYEYIIKDKSLLSKHDW 591

Query: 182 SYLMVDEAHRLKNSEASL 235
           +++++DE HR+KN+++ L
Sbjct: 592 AHMIIDEGHRMKNAQSKL 609

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>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +2

Query: 14   DMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK----FHTLITTYEVILKDKAVLSKIKW 181
            D+NVV+Y G+  SR+M QQ+E +     GR ++    F  +ITT+E+IL     L+ I+W
Sbjct: 932  DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEW 991

Query: 182  SYLMVDEAHRLKNSEASL 235
              +++DEAHRLKN    L
Sbjct: 992  RCVIIDEAHRLKNKNCKL 1009

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>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal
            proliferator-activated receptor A-interacting complex 320
            kDa protein) (PPAR-alpha-interacting complex protein 320
            kDa)
          Length = 2885

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
 Frame = +2

Query: 14   DMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK----FHTLITTYEVILKDKAVLSKIKW 181
            D+NVV+Y G+  SR+M QQ+E +     GR ++    F  +ITT+E+IL     L+ I W
Sbjct: 931  DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIDW 990

Query: 182  SYLMVDEAHRLKNSEASL 235
              +++DEAHRLKN    L
Sbjct: 991  RCVIIDEAHRLKNKNCKL 1008

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>SNF21_SCHPO (Q9UTN6) SNF2-family ATP dependent chromatin remodeling factor|
           snf21 (EC 3.6.1.-) (ATP-dependent helicase snf21)
          Length = 1199

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           +W P +  ++Y G    R+              RH  F  L+TTYE I+KD+ +LS+IKW
Sbjct: 487 RWAPSIVKIVYKGPPQVRKALHPQV--------RHSNFQVLLTTYEYIIKDRPLLSRIKW 538

Query: 182 SYLMVDEAHRLKNSEASL 235
            Y+++DE HR+KN+++ L
Sbjct: 539 IYMIIDEGHRMKNTQSKL 556

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>INO80_DEBHA (Q6BGY8) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1364

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 27/83 (32%), Positives = 54/83 (65%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           +++P+  V+ Y GN   R++ ++     N + G+   FH L+T+Y++++ D A   K+KW
Sbjct: 637 RFVPEFKVIPYWGNAKDRKVLRKFWDRKNFRYGKDAPFHVLVTSYQLVVADAAYFQKMKW 696

Query: 182 SYLMVDEAHRLKNSEASLYIALL 250
            Y+++DEA  +K+S++S + +LL
Sbjct: 697 QYMILDEAQAIKSSQSSRWKSLL 719

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>ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain isw-1 (EC|
           3.6.1.-)
          Length = 1009

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 29/78 (37%), Positives = 44/78 (56%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KW P +N V+ +G+ A+R    +      K       F    TTYE++LK K  L K+ W
Sbjct: 202 KWCPSINAVVLIGDEAARNQVLRDVILPQK-------FDVCCTTYEMMLKVKTQLKKLNW 254

Query: 182 SYLMVDEAHRLKNSEASL 235
            Y+++DEAHR+KN ++ L
Sbjct: 255 RYIIIDEAHRIKNEKSKL 272

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>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha)
           (SWI/SNF-related matrix associated actin dependent
           regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 32/78 (41%), Positives = 43/78 (55%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KW P +  + Y G  A R               R  KF+ L+TTYE I+KDK +L+KI+W
Sbjct: 790 KWAPSVVKISYKGTPAMRRSLVPQL--------RSGKFNVLLTTYEYIIKDKHILAKIRW 841

Query: 182 SYLMVDEAHRLKNSEASL 235
            Y++VDE HR+KN    L
Sbjct: 842 KYMIVDEGHRMKNHHCKL 859

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>ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain ISW1 (EC|
           3.6.1.-)
          Length = 1129

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           +W PD+N  I  G++  R      E    K  G    F  +I +YE+I+++K+ L KI W
Sbjct: 266 RWTPDVNAFILQGDKEERA-----ELIQKKLLG--CDFDVVIASYEIIIREKSPLKKINW 318

Query: 182 SYLMVDEAHRLKNSEASLYIALLE 253
            Y+++DEAHR+KN E+ L   L E
Sbjct: 319 EYIIIDEAHRIKNEESMLSQVLRE 342

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>INO80_ASHGO (Q74Z27) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1414

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 32/86 (37%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172
           K++PD  ++ Y GN   R++ ++   F ++K  R+ K   FH +IT+Y++I+ D A L K
Sbjct: 725 KFVPDFKILPYWGNGNDRKILRR---FWDRKHLRYSKDAPFHVMITSYQMIVSDAAYLQK 781

Query: 173 IKWSYLMVDEAHRLKNSEASLYIALL 250
           +KW Y+++DEA  +K+S++S +  LL
Sbjct: 782 MKWQYMILDEAQAIKSSQSSRWKNLL 807

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>CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
           (ATP-dependent helicase Chd3)
          Length = 892

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFF-------TNKKGGRHVKFHTLITTYEVILKDKAV 163
           W P++  V YVG + +R + ++HE         T ++     KF+ ++T+YE I  D A 
Sbjct: 338 WAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAF 397

Query: 164 LSKIKWSYLMVDEAHRLKNSEASLY 238
           L  I W+ L+VDEAHRL+++++  +
Sbjct: 398 LGCIDWAALVVDEAHRLRSNQSKFF 422

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>SMCA1_HUMAN (P28370) Probable global transcription activator SNF2L1 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA1)
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 1)
          Length = 976

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 25/78 (32%), Positives = 48/78 (61%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           +W+P + V+ +VG++ +R    + E    +       +   +T+YE+++K+K+V  K  W
Sbjct: 175 RWVPSLRVICFVGDKDARAAFIRDEMMPGE-------WDVCVTSYEMVIKEKSVFKKFHW 227

Query: 182 SYLMVDEAHRLKNSEASL 235
            YL++DEAHR+KN ++ L
Sbjct: 228 RYLVIDEAHRIKNEKSKL 245

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>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC|
            3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2)
          Length = 1982

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
 Frame = +2

Query: 5    WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGR----------HVKFHTLITTYEVILKD 154
            W PD   + Y+G++ SR + +++E    +   R            KF+ L+T+YE+I  D
Sbjct: 801  WAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMD 860

Query: 155  KAVLSKIKWSYLMVDEAHRLKNSEASLY 238
             A L  I W+ L+VDEAHRLK++++  +
Sbjct: 861  AACLGSIDWAVLVVDEAHRLKSNQSKFF 888

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>INO80_CANAL (Q59KI4) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1387

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 31/86 (36%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172
           K++P+  V+ Y GN   R++ ++   F ++K  R+ K   FH L+T+Y++I+ D A   K
Sbjct: 742 KFVPEFKVLPYWGNAKDRKILRK---FWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQK 798

Query: 173 IKWSYLMVDEAHRLKNSEASLYIALL 250
           +KW Y+++DEA  +K+S +S + +LL
Sbjct: 799 MKWQYMILDEAQAIKSSSSSRWKSLL 824

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>SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodeling factor snf22|
            (EC 3.6.1.-) (ATP-dependent helicase snf22)
          Length = 1680

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P +  + Y G    R+  Q     +N        F+ L+TT+E I+KD+ +LS+IKW
Sbjct: 939  KWAPSVKKIAYKGPPQLRKTLQSQIRSSN--------FNVLLTTFEYIIKDRPLLSRIKW 990

Query: 182  SYLMVDEAHRLKNSEASL 235
             ++++DE HR+KN+++ L
Sbjct: 991  VHMIIDEGHRIKNTQSKL 1008

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>INO80_YEAST (P53115) Putative DNA helicase INO80 (EC 3.6.1.-)|
            (Inositol-requiering protein 80)
          Length = 1489

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 26/83 (31%), Positives = 52/83 (62%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            K+LP   ++ Y GN   R++ ++     N +  ++  FH ++T+Y++++ D   L K+KW
Sbjct: 776  KFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKW 835

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEA  +K+S++S +  LL
Sbjct: 836  QYMILDEAQAIKSSQSSRWKNLL 858

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>INO80_KLULA (Q6CNY4) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1489

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 25/83 (30%), Positives = 52/83 (62%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            +++P   ++ Y GN   R+  ++     + + GR   FH ++T+Y++++ D + L K+KW
Sbjct: 816  RFVPQFKILPYWGNANDRKTLRKFWDRKHLRYGRDAPFHVMVTSYQMVVSDASYLQKMKW 875

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEA  +K+S++S +  LL
Sbjct: 876  QYMILDEAQAIKSSQSSRWKTLL 898

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>SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3.6.1.-)|
            (ATP-dependent helicase SNF2) (SWI/SNF complex component
            SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1)
            (Transcription factor TYE3)
          Length = 1703

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 27/82 (32%), Positives = 50/82 (60%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P +  + + G+   R+  Q           R  +F  ++TT+E I+K++A+LSK+KW
Sbjct: 837  KWAPTLRTISFKGSPNERKAKQAKI--------RAGEFDVVLTTFEYIIKERALLSKVKW 888

Query: 182  SYLMVDEAHRLKNSEASLYIAL 247
             ++++DE HR+KN+++ L + L
Sbjct: 889  VHMIIDEGHRMKNAQSKLSLTL 910

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>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1612

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/86 (32%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172
            K++P++ V+ Y GN   R++ ++   F ++K   + K   FH L+T+Y++++ D     K
Sbjct: 868  KFVPNIKVLPYWGNAKDRKILRK---FWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQK 924

Query: 173  IKWSYLMVDEAHRLKNSEASLYIALL 250
            +KW Y+++DEA  +K+S++S + +LL
Sbjct: 925  VKWQYMILDEAQAIKSSQSSRWKSLL 950

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>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1708

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 28/86 (32%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172
            K++PD+ V+ Y G+   R++ ++   F ++K   + K   FH L+T+Y++++ D     K
Sbjct: 903  KFVPDIKVLPYWGSAKDRKVLRK---FWDRKHITYTKESEFHVLVTSYQLVVLDSQYFQK 959

Query: 173  IKWSYLMVDEAHRLKNSEASLYIALL 250
            +KW Y+++DEA  +K+S++S +  LL
Sbjct: 960  VKWQYMILDEAQAIKSSQSSRWKNLL 985

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>SWR1_EMENI (Q5ARK3) Helicase swr1 (EC 3.6.1.-)|
          Length = 1656

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 27/83 (32%), Positives = 47/83 (56%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P   ++ Y GN+  R   ++     N        ++ LIT+Y+++L+D+ VL +  W
Sbjct: 853  KWCPGFKIMTYYGNQEERRQKRRGWMDDNS-------WNVLITSYQLVLQDQQVLKRRSW 905

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEAH +KN  +  + ALL
Sbjct: 906  HYMILDEAHNIKNFRSQRWQALL 928

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>INO80_CANGA (Q6FV37) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1484

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 25/83 (30%), Positives = 51/83 (61%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            K++P   ++ Y G+   R++ ++     N +      FH +IT+Y++++ D + L K+KW
Sbjct: 792  KFVPQFKILPYWGSANDRKVLRKFWDRKNLRYSEKSPFHVMITSYQMVVADASYLQKMKW 851

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEA  +K+S++S +  LL
Sbjct: 852  QYMILDEAQAIKSSQSSRWKNLL 874

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>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172
            K++P   V+ Y G    R++ ++   F ++K   + K   FH +IT+Y++++ D A   K
Sbjct: 1188 KFVPQFKVLPYWGTAGDRKVLRK---FWDRKHTTYKKDAPFHVMITSYQLVVSDVAYFQK 1244

Query: 173  IKWSYLMVDEAHRLKNSEASLYIALL 250
            +KW Y+++DEA  +K+S++S +  LL
Sbjct: 1245 MKWQYMILDEAQAIKSSQSSRWKCLL 1270

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>SMCA5_MOUSE (Q91ZW3) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 5 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2 homolog) (mSnf2h)
          Length = 1051

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 24/78 (30%), Positives = 44/78 (56%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KW+P +  V  +G++  R    +      +       +   +T+YE+++K+K+V  K  W
Sbjct: 249 KWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-------WDVCVTSYEMLIKEKSVFKKFNW 301

Query: 182 SYLMVDEAHRLKNSEASL 235
            YL++DEAHR+KN ++ L
Sbjct: 302 RYLVIDEAHRIKNEKSKL 319

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>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1904

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 23/83 (27%), Positives = 51/83 (61%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            K++P+  ++ Y G  + R++ ++     +    +   FH  +T+Y++++ D A   K++W
Sbjct: 1115 KFVPEFKILPYWGGASDRKVLRKFWDRKHTTYRKDAPFHVCVTSYQLVVSDVAYFQKMRW 1174

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEA  +K+S++S + ALL
Sbjct: 1175 QYMILDEAQAIKSSQSSRWKALL 1197

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>YFK8_YEAST (P43610) Hypothetical ATP-dependent helicase YFR038W (EC 3.6.1.-)|
          Length = 853

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 28/78 (35%), Positives = 44/78 (56%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           K+ PD+ V+ Y G    +E   + + F  + GG  +    +IT+YE+IL+D  ++    W
Sbjct: 291 KFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGI----VITSYEIILRDTDLIMSQNW 346

Query: 182 SYLMVDEAHRLKNSEASL 235
            +L+VDE HRLKN    L
Sbjct: 347 KFLIVDEGHRLKNINCRL 364

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>SMCA5_HUMAN (O60264) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 5 (EC 3.6.1.-)
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2
          Length = 1052

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 23/78 (29%), Positives = 44/78 (56%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           +W+P +  V  +G++  R    +      +       +   +T+YE+++K+K+V  K  W
Sbjct: 250 RWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-------WDVCVTSYEMLIKEKSVFKKFNW 302

Query: 182 SYLMVDEAHRLKNSEASL 235
            YL++DEAHR+KN ++ L
Sbjct: 303 RYLVIDEAHRIKNEKSKL 320

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>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1910

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG---GRHVKFHTLITTYEVILKDKAVLSK 172
            K++P +  + Y GN   R + ++   F N+K     R   FH L+T+Y++++ D+    +
Sbjct: 1068 KFVPTLKALPYWGNVKDRAVLRK---FWNRKQISYNRDAPFHVLVTSYQLVVSDEKYFQR 1124

Query: 173  IKWSYLMVDEAHRLKNSEASLYIALL 250
            +KW Y+++DEA  +K+S +  +  LL
Sbjct: 1125 VKWQYMILDEAQAIKSSSSIRWKTLL 1150

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>ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain Iswi (EC|
           3.6.1.-) (Protein imitation swi) (Nucleosome remodeling
           factor 140 kDa subunit) (NURF-140) (CHRAC 140 kDa
           subunit)
          Length = 1027

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 25/84 (29%), Positives = 45/84 (53%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KW P +  V  +G++ +R    +      +       +   +T+YE+ +++K+V  K  W
Sbjct: 198 KWCPSLRAVCLIGDQDTRNTFIRDVLMPGE-------WDVCVTSYEMCIREKSVFKKFNW 250

Query: 182 SYLMVDEAHRLKNSEASLYIALLE 253
            YL++DEAHR+KN ++ L   L E
Sbjct: 251 RYLVIDEAHRIKNEKSKLSEILRE 274

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>SWR1_CRYNE (Q5K8T2) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1246

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK--FHTLITTYEVILKDKAVLSKI 175
           K+LP M V+ Y GN+  R+          K+ G H +  +   IT+Y+++L D+ +  + 
Sbjct: 463 KFLPGMKVLTYYGNQKERK---------EKRVGWHTENTWQVCITSYQIVLADQHIFRRK 513

Query: 176 KWSYLMVDEAHRLKNSEASLYIALL 250
            W Y+++DEAH +KN  +  +  LL
Sbjct: 514 NWCYMILDEAHNIKNFRSQRWQTLL 538

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>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)|
          Length = 1695

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 26/83 (31%), Positives = 48/83 (57%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P   ++ Y G+   R   Q+ + +T+        ++ LIT+Y+++L+D+ VL +  W
Sbjct: 900  KWCPGFKIMTYYGSIEERR--QKRKGWTDD-----TSWNVLITSYQLVLQDQQVLKRRNW 952

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEAH +KN  +  +  LL
Sbjct: 953  HYMVLDEAHNIKNFRSQKWQTLL 975

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>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 24/83 (28%), Positives = 49/83 (59%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P   ++ Y GN+  R+  ++ + + N        ++  IT+Y+++L+D+ V  + +W
Sbjct: 1015 KWCPGFKILTYYGNQEERK--RKRQGWNNDD-----VWNVCITSYQMVLQDQQVFRRRRW 1067

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEAH +KN ++  +  LL
Sbjct: 1068 HYMILDEAHNIKNFKSQRWQTLL 1090

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>INO80_CRYNE (Q5KHM0) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1765

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 24/83 (28%), Positives = 49/83 (59%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            +++P +  + Y G+   RE  ++     N+       FH LIT+Y++ ++D+  L  +KW
Sbjct: 941  RFVPRLKALPYWGSPKDRETLRKIWSRKNQTFSEDSPFHILITSYQLAVQDEKYLQGMKW 1000

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEA  +K+S ++ + +LL
Sbjct: 1001 QYMILDEAQAIKSSSSARWKSLL 1023

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>SWR1_SCHPO (O13682) Helicase swr1 (EC 3.6.1.-)|
          Length = 1288

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK--FHTLITTYEVILKDKAVLSKI 175
           K+LP   ++ Y GN   R+          K+ G +    +H  IT+Y+++L+D     + 
Sbjct: 517 KFLPGFKILTYYGNPQERK---------EKRSGWYKPDTWHVCITSYQLVLQDHQPFRRK 567

Query: 176 KWSYLMVDEAHRLKNSEASLYIALL 250
           KW Y+++DEAH +KN  +  + +LL
Sbjct: 568 KWQYMILDEAHNIKNFRSQRWQSLL 592

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>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1691

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 23/83 (27%), Positives = 49/83 (59%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            KW P   ++ Y G++  R+  ++ + + N        ++  IT+Y+++L+D+ V  + +W
Sbjct: 881  KWCPGFKILAYYGSQEERK--RKRQGWNNDD-----IWNVCITSYQLVLQDQQVFKRRRW 933

Query: 182  SYLMVDEAHRLKNSEASLYIALL 250
             Y+++DEAH +KN ++  +  LL
Sbjct: 934  HYMILDEAHNIKNFKSQRWQTLL 956

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>SWR1_CANGA (Q6FK48) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1450

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178
           ++ P   V+ Y GN   R+          +KG  +   FH  I +Y++I++D+    + K
Sbjct: 698 RFAPGFKVLTYYGNPQQRK--------EKRKGWNKPDAFHVCIVSYQLIVQDQHSFKRKK 749

Query: 179 WSYLMVDEAHRLKNSEASLYIALL 250
           W Y+++DEAH +KN  ++ + ALL
Sbjct: 750 WQYMVLDEAHNIKNFRSTRWQALL 773

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>SWR1_CANAL (Q59U81) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1641

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178
            K+ P   V+ Y G+   R           +KG  +   FH  IT+Y+++++D+    + +
Sbjct: 893  KFAPGFKVLTYYGSPQQRAQ--------KRKGWNKPDAFHVCITSYQLVVQDQQSFKRRR 944

Query: 179  WSYLMVDEAHRLKNSEASLYIALL 250
            W+Y+++DEAH +KN  ++ + ALL
Sbjct: 945  WTYMILDEAHNIKNFRSTRWRALL 968

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>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC|
           3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
           homolog)
          Length = 1107

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 22/78 (28%), Positives = 42/78 (53%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           ++ P +  V ++GN   R   +++     K       F   +T++E+ +K+K  L +  W
Sbjct: 301 RFCPILRAVKFLGNPEERNHIRENLLQPGK-------FDVCVTSFEMAIKEKTTLKRFSW 353

Query: 182 SYLMVDEAHRLKNSEASL 235
            Y+++DEAHR+KN  + L
Sbjct: 354 RYIIIDEAHRIKNENSLL 371

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>SWR1_USTMA (Q4P328) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1830

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK--FHTLITTYEVILKDKAVLSKI 175
            K+LP   ++ Y GN+  R+          K+ G + +  F+  IT+Y+++L D+ +  + 
Sbjct: 1060 KFLPGFKILSYYGNQKERK---------EKRIGWNTENSFNVCITSYQLVLADQHIFRRK 1110

Query: 176  KWSYLMVDEAHRLKNSEASLYIALL 250
             W YL++DEAH +KN  +  +  LL
Sbjct: 1111 PWVYLVLDEAHHIKNFRSQRWQTLL 1135

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>ISW2_ARATH (Q8RWY3) Putative chromatin remodelling complex ATPase chain (EC|
           3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
           homolog)
          Length = 1057

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
 Frame = +2

Query: 74  EFFTNKKGGRHV--------KFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEA 229
           +F  N +  RH+        KF   +T++E+ +K+K  L +  W Y+++DEAHR+KN  +
Sbjct: 268 KFLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENS 327

Query: 230 SL 235
            L
Sbjct: 328 LL 329

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>SWR1_KLULA (Q6CJ38) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1572

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178
            ++ P   V+ Y G+   R           +KG  +   FH  IT+Y++++ D+    + K
Sbjct: 835  RFAPGFKVLTYYGSPQQRR--------EKRKGWNKPDAFHVCITSYQLVVHDQHSFKRKK 886

Query: 179  WSYLMVDEAHRLKNSEASLYIALL 250
            W Y+++DEAH +KN  ++ + ALL
Sbjct: 887  WQYMILDEAHNIKNFRSTRWQALL 910

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>SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1486

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK-FHTLITTYEVILKDKAVLSKIK 178
           ++ P   V+ Y G+   R+          ++G   +  FH  IT+Y++++ D+    + K
Sbjct: 741 RFAPGFKVLSYYGSPQQRK--------EKRRGWNKLDAFHVCITSYQLVVHDQHSFKRKK 792

Query: 179 WSYLMVDEAHRLKNSEASLYIALL 250
           W Y+++DEAH +KN +++ + ALL
Sbjct: 793 WQYMILDEAHNIKNFKSTRWQALL 816

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>SWR1_DEBHA (Q6BKC2) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1616

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178
            K+ P   V+ Y G+   R           +KG  +   FH  IT+Y++++ D     + +
Sbjct: 851  KFAPGFKVLTYYGSPQQRAQ--------KRKGWNKPNAFHVCITSYQLVVHDHQSFKRRR 902

Query: 179  WSYLMVDEAHRLKNSEASLYIALL 250
            W Y+++DEAH +KN  ++ + ALL
Sbjct: 903  WRYMILDEAHNIKNFRSARWRALL 926

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>SWR1_YEAST (Q05471) Helicase SWR1 (EC 3.6.1.-) (Swi2/Snf2-related 1)|
          Length = 1514

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178
           ++ P   V+ Y G+   R+          +KG  +   FH  I +Y+++++D+    + +
Sbjct: 766 RFAPGFKVLTYYGSPQQRK--------EKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKR 817

Query: 179 WSYLMVDEAHRLKNSEASLYIALL 250
           W Y+++DEAH +KN  ++ + ALL
Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALL 841

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>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1772

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGG--RHVKFHTLITTYEVILKDKAVLSKI 175
            ++ P   V+ Y GN   R           K+ G  +   +H  IT+Y+++L+D     + 
Sbjct: 979  RFAPGFKVMTYYGNPVQRR---------EKRRGWNKEDTWHVCITSYQLVLQDLFAFRRK 1029

Query: 176  KWSYLMVDEAHRLKNSEASLYIALL 250
            +W Y+++DEAH +KN  +  + +LL
Sbjct: 1030 RWHYMILDEAHNIKNFRSQRWQSLL 1054

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>RAD54_HUMAN (Q92698) DNA repair and recombination protein RAD54-like (EC|
           3.6.1.-) (RAD54 homolog) (hRAD54) (hHR54)
          Length = 747

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 30/82 (36%), Positives = 40/82 (48%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KWL      + +   +  E+ Q+ E F N++G R V    LI +YE       VL K   
Sbjct: 232 KWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGAR-VSSPILIISYETFRLHVGVLQKGSV 290

Query: 182 SYLMVDEAHRLKNSEASLYIAL 247
             ++ DE HRLKNSE   Y AL
Sbjct: 291 GLVICDEGHRLKNSENQTYQAL 312

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>RAD54_MOUSE (P70270) DNA repair and recombination protein RAD54-like (EC|
           3.6.1.-) (RAD54 homolog) (mRAD54) (mHR54)
          Length = 747

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 29/82 (35%), Positives = 40/82 (48%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KWL      + +   +  E+ ++ E F N++G R V    LI +YE       VL K   
Sbjct: 232 KWLGGRIQPLAIDGGSKDEIDRKLEGFMNQRGAR-VPSPILIISYETFRLHVGVLKKGNV 290

Query: 182 SYLMVDEAHRLKNSEASLYIAL 247
             ++ DE HRLKNSE   Y AL
Sbjct: 291 GLVICDEGHRLKNSENQTYQAL 312

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>SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A containing DEAD/H box
           1 (EC 3.6.1.-) (ATP-dependent helicase SMARCAD1)
           (Enhancer trap locus homolog 1) (Etl-1)
          Length = 1021

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILK---DKAVLSKI 175
           W P +NV+ Y G++  R+   Q  F  + K   +  ++ ++TTY   +    D+++  ++
Sbjct: 562 WCPSLNVLCYYGSQEERK---QIRFNIHNK---YEDYNVIVTTYNCAISSSDDRSLFRRL 615

Query: 176 KWSYLMVDEAHRLKNSEASLYIALL 250
           K +Y + DE H LKN  +  Y  L+
Sbjct: 616 KLNYAIFDEGHMLKNMGSIRYQHLM 640

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>MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 (EC 3.6.1.-)|
            (TBP-associated factor MOT1) (Modifier of transcription
            1)
          Length = 1867

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 32/44 (72%)
 Frame = +2

Query: 122  LITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLE 253
            ++T+Y+V   D AVL+K +++Y ++DE H +KNS++ L  A+ E
Sbjct: 1383 IVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKE 1426

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>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            +W P +  + YVG+   RE+  + + +T         FH  IT+Y+   +     S++ W
Sbjct: 1160 RWCPGLKTLSYVGSH--RELKAKRQEWTEPNN-----FHICITSYKQFFRGYTAFSRVHW 1212

Query: 182  SYLMVDEAHRLK 217
              L+VDE  R+K
Sbjct: 1213 KCLVVDEMQRVK 1224

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>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor|
            mot1) (Modifier of transcription 1)
          Length = 1953

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +2

Query: 5    WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184
            + P + V  YVG  A R           K   +  K   ++T+Y++   D   L KI W+
Sbjct: 1440 YAPFLKVSAYVGPPAERA----------KIRSKMKKSDVVVTSYDICRNDVDELVKIDWN 1489

Query: 185  YLMVDEAHRLKNSEASL 235
            Y ++DE H +KN+ A L
Sbjct: 1490 YCVLDEGHVIKNARAKL 1506

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>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A containing DEAD/H box
           1 (EC 3.6.1.-) (ATP-dependent helicase 1) (hHEL1)
          Length = 1026

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +2

Query: 5   WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILK---DKAVLSKI 175
           W P + V+ Y G++  R+  + +         R+  ++ ++TTY   +    D+++  ++
Sbjct: 567 WCPTLKVLCYYGSQEERKQIRFNIH------SRYEDYNVIVTTYNCAISSSDDRSLFRRL 620

Query: 176 KWSYLMVDEAHRLKNSEASLYIALL 250
           K +Y + DE H LKN  +  Y  L+
Sbjct: 621 KLNYAIFDEGHMLKNMGSIRYQHLM 645

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>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +2

Query: 2    KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
            +W P + ++ Y+G+    +  +Q     N        FH  IT+Y    +     ++++W
Sbjct: 1161 RWCPGLKILSYIGSHRELKAKRQEWAEPNS-------FHVCITSYTQFFRGLTAFTRVRW 1213

Query: 182  SYLMVDEAHRLK 217
              L++DE  R+K
Sbjct: 1214 KCLVIDEMQRVK 1225

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>RAD26_YEAST (P40352) DNA repair and recombination protein RAD26 (EC 3.6.1.-)|
           (ATP-dependent helicase RAD26)
          Length = 1085

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 116 HTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASL 235
           H LITTY  +      L K+KW Y ++DE H+++N ++ +
Sbjct: 442 HILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEI 481

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>RA54B_HUMAN (Q9Y620) DNA repair and recombination protein RAD54B (EC 3.6.1.-)|
           (RAD54 homolog B)
          Length = 910

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 101 RHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALL 250
           + + +  LI +YE++L+    +  IK+  L+ DE HRLKNS      AL+
Sbjct: 399 KSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALI 448

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>TTF2_DROME (P34739) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
           polymerase II termination factor) (Transcription release
           factor 2) (Protein lodestar)
          Length = 1061

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +2

Query: 41  NRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKI---KWSYLMVDEAHR 211
           +R    +C  H      KG     +  ++TTY+++ ++   LS +   KW  +++DEAH 
Sbjct: 548 SRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHV 607

Query: 212 LKNSEASLYIALLE 253
           ++N ++   +A+ +
Sbjct: 608 VRNHKSQSSLAVCD 621

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>Y020_MYCPN (P75093) Hypothetical ATP-dependent helicase MPN020 (EC 3.6.1.-)|
           (D12_orf1030)
          Length = 1030

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 19/71 (26%), Positives = 39/71 (54%)
 Frame = +2

Query: 23  VVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDE 202
           + + V N  S+E  + +E  TN+          LI ++ V+  D  +++K ++ Y+++DE
Sbjct: 653 IKVKVANIPSKERGELYEKLTNE---------ILIVSFNVLRSDVKLITKQRFHYVVIDE 703

Query: 203 AHRLKNSEASL 235
           A  +KN  +S+
Sbjct: 704 AQGIKNDSSSI 714

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>RA54B_MOUSE (Q6PFE3) DNA repair and recombination protein RAD54B (EC 3.6.1.-)|
           (RAD54 homolog B)
          Length = 886

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 113 FHT-LITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
           FH+ LI +YE++L+    +  I +  L+ DE HRLKNS      AL
Sbjct: 380 FHSVLIISYEMLLRSLDQIKTIPFGLLICDEGHRLKNSSIKTTTAL 425

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>RA54B_CHICK (Q9DG67) DNA repair and recombination protein RAD54B (EC 3.6.1.-)|
           (RAD54 homolog B)
          Length = 918

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +2

Query: 113 FHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
           +  +I +YE++L+    +  I+++ L+ DE HRLKNS      AL
Sbjct: 410 YSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTAL 454

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>RAD54_SCHPO (P41410) DNA repair protein rhp54 (EC 3.6.1.-) (RAD54 homolog 1)|
          Length = 852

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 98  GRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
           GR V    LI +YE +      L+  +   L+ DE HRLKNS++  + AL
Sbjct: 377 GRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTAL 426

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>YFC1_SCHPO (O42861) Probable ATP-dependent helicase C25A8.01c in chromosome I|
           (EC 3.6.1.-)
          Length = 922

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKA---VLSK 172
           K+ P + + +Y G++  RE  ++    +NK       ++ ++TTY +    KA    L  
Sbjct: 456 KFCPKLKIELYYGSQVEREEIRER-INSNKDS-----YNVMLTTYRLAATSKADRLFLRN 509

Query: 173 IKWSYLMVDEAHRLKNSEASLYIALL 250
            K++  + DE H LKN  +  Y  L+
Sbjct: 510 QKFNVCVYDEGHYLKNRASERYRHLM 535

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>ERCC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (EC 3.6.1.-)|
           (ATP-dependent helicase ERCC6) (Cockayne syndrome
           protein CSB)
          Length = 1493

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +2

Query: 122 LITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIA 244
           LIT+Y  I   +  +S+  W Y+++DE H+++N  A++ +A
Sbjct: 621 LITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLA 661

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>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (TNF-response
           element-binding protein) (P113)
          Length = 1003

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +2

Query: 122 LITTYEVIL-----KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLE 253
           ++TTY ++      KD + L  IKW  +++DE H ++N  A    A+LE
Sbjct: 521 ILTTYNILTHDYGTKDDSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLE 569

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>RAD54_CHICK (O12944) DNA repair and recombination protein RAD54-like (EC|
           3.6.1.-) (RAD54 homolog) (Putative recombination factor
           GdRad54) (Fragment)
          Length = 733

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           KWL      + +   +  E+ ++     N++G R V    LI +YE        L K   
Sbjct: 221 KWLGGRIQPLAIDGGSKEEIDRKLVGSMNQRGLR-VPSPILIISYETFRLHAEALQKGSV 279

Query: 182 SYLMVDEAHRLKNSEASLYIAL 247
             ++ DE HRLKNSE   Y AL
Sbjct: 280 GLVICDEGHRLKNSENQTYQAL 301

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>RAD54_YEAST (P32863) DNA repair and recombination protein RAD54 (EC 3.6.1.-)|
          Length = 898

 Score = 34.3 bits (77), Expect = 0.087
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 98  GRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL 247
           GR++    LI +YE + ++   L       ++ DE HRLKN ++  + AL
Sbjct: 422 GRNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTAL 471

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>BTAF1_HUMAN (O14981) TATA-binding protein-associated factor 172 (EC 3.6.1.-)|
            (ATP-dependent helicase BTAF1) (TBP-associated factor
            172) (TAF-172) (TAF(II)170) (B-TFIID transcription
            factor-associated 170 kDa subunit)
          Length = 1849

 Score = 34.3 bits (77), Expect = 0.087
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 107  VKFHTLIT-TYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASL 235
            VK H LI  +Y+V+  D      IK++Y ++DE H +KN +  L
Sbjct: 1373 VKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKL 1416

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>YAB9_YEAST (P31380) Hypothetical 128.5 kDa ATP-dependent helicase in ATS1-TPD3|
           intergenic region (EC 3.6.1.-)
          Length = 1131

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIK- 178
           K+ P + +  Y G+   RE  +  +      G    K+  ++TTY +   +K  +S +K 
Sbjct: 641 KFAPALKIEPYYGSLQERE--ELRDILERNAG----KYDVIVTTYNLAAGNKYDVSFLKN 694

Query: 179 --WSYLMVDEAHRLKNSEASLYIALLE 253
             ++ ++ DE H LKNS +  +  L++
Sbjct: 695 RNFNVVVYDEGHMLKNSTSERFAKLMK 721

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>GTA_NPVAC (P41447) Probable global transactivator (EC 3.6.1.-) (ATP-dependent|
           helicase GTA)
          Length = 506

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
 Frame = +2

Query: 113 FHTLITTYEVIL--------KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIA 244
           +H ++TTY+V+L          ++ L   +W  +++DEAH +KN +  ++ A
Sbjct: 121 YHIVVTTYDVLLAHFKLIKQNKQSSLFSTRWHRVVLDEAHIIKNCKTGVHNA 172

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>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3-like 1 (EC
           3.6.1.-) (SMARCA3-like protein 1)
          Length = 881

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
 Frame = +2

Query: 107 VKFHTLITTYEVILKDKA----VLSKIKWSYLMVDEAHRLKNSEA 229
           +K+  ++TTY  +  +++     + K++W  +++DEAH +KN+ A
Sbjct: 403 MKYDIVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANA 447

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>Y018_MYCGE (P47264) Hypothetical ATP-dependent helicase MG018 (EC 3.6.1.-)|
          Length = 1031

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 20/78 (25%), Positives = 40/78 (51%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181
           K+ P + +V   GN   +E  Q +E   N+          L+ ++ V+  D   +S+ K+
Sbjct: 648 KFAPHVKIVTANGN--FKERSQVYESLKNQ---------ILLMSFNVLRSDIKWISQKKF 696

Query: 182 SYLMVDEAHRLKNSEASL 235
            Y+++DEA  +KN  +++
Sbjct: 697 HYVVIDEAQGIKNENSTV 714

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>SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3-like 2 (EC
           3.6.1.-) (SMARCA3-like protein 2)
          Length = 1029

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
 Frame = +2

Query: 122 LITTYEVILK--------DKAVLSKIKWSYLMVDEAHRLKNSEASLYIA 244
           +ITTY V+          D   +  ++W  +++DEAH +KNS++ + +A
Sbjct: 540 VITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLA 588

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>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (RUSH-1)
          Length = 1005

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +2

Query: 122 LITTYEVILKDKAV-----LSKIKWSYLMVDEAHRLKNSEASLYIALLE 253
           ++TTY ++  D        L  I+W  +++DE H ++N  A    A+L+
Sbjct: 524 VLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLD 572

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>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (DNA binding
           protein/plasminogen activator inhibitor 1 regulator)
           (Helicase-like tran
          Length = 1009

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +2

Query: 122 LITTYEVILKDKAV-----LSKIKWSYLMVDEAHRLKNSEASLYIALLE 253
           ++TTY ++  D        L  I+W  +++DE H ++N  A    A+L+
Sbjct: 527 VLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLD 575

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>RS26B_SCHPO (Q9UTG4) 40S ribosomal protein S26-B|
          Length = 119

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 86  NKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYL-MVDEAHRLKNSEASLY 238
           NK G  HVKF   I     + KDKA+    +W+   MV+ A     SEAS+Y
Sbjct: 11  NKHGRGHVKFVRCINCSRAVPKDKAIK---RWTIRNMVETAAIRDLSEASVY 59

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>REP_BUCAI (P57654) ATP-dependent DNA helicase rep (EC 3.6.1.-)|
          Length = 645

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +2

Query: 2   KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHV-KFHTLITTYEVILKDKAVLSKIK 178
           K+L  + V +   +   ++    +E +TN     ++  F  LI    ++LK+   + KI+
Sbjct: 145 KFLTPLQVQLLAKSSQEKDFAYVYEQYTNYLYKANILDFDDLICMPTLLLKNNKKI-KIR 203

Query: 179 W----SYLMVDEAHRLKNSEASL 235
           W    SYL+VDE     NS+  L
Sbjct: 204 WQKKISYLLVDEYQDTNNSQYEL 226

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>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
           polymerase II termination factor) (Transcription release
           factor 2)
          Length = 1184

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 24/73 (32%)
 Frame = +2

Query: 101 RHVK----FHTLITTYEVILKD--------------------KAVLSKIKWSYLMVDEAH 208
           RH K    +  +ITTY ++ K+                     A L ++ W+ +++DEAH
Sbjct: 703 RHAKVLSTYDIVITTYSLLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAH 762

Query: 209 RLKNSEASLYIAL 247
            +KN      IA+
Sbjct: 763 NVKNPRVQTSIAV 775

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>SPOT_SPICI (O34098) Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase|
           (EC 3.1.7.2) ((ppGpp)ase) (Penta-phosphate
           guanosine-3'-pyrophosphohydrolase)
          Length = 749

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 101 RHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAH--RLKNSEASLYI 241
           R +K+  ++   ++ +KD+A L +I+ +Y   +E H  +++NS A   I
Sbjct: 3   RDIKYEEVLAQIKLYIKDEATLKEIQKAYEYAEEKHHGQVRNSGARYII 51

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>HELX_SULSO (P95949) Putative ATP-dependent helicase SSO0112 (EC 3.6.1.-)|
          Length = 875

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +2

Query: 116 HTLITTYEVI------LKDKAVLSKIKWSYLMVDEAHRLKNSEASLYI-ALLE 253
           H LITT E         K    L+ +KW  ++VDE H L NS+   Y+ A+LE
Sbjct: 142 HILITTPESFGISITSPKFSQKLTDVKW--IIVDEIHELANSKRGAYLSAMLE 192

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>RS26A_SCHPO (Q9UT56) 40S ribosomal protein S26-A|
          Length = 120

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 86  NKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYL-MVDEAHRLKNSEASLY 238
           NK G  H KF   I     + KDKA+    +W+   MV+ A     SEAS+Y
Sbjct: 11  NKHGRGHTKFVRCINCSRAVPKDKAIK---RWNIRNMVETAAIRDLSEASVY 59

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>TTF2_HUMAN (Q9UNY4) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
           polymerase II termination factor) (Transcription release
           factor 2) (Factor 2) (F2) (HuF2) (Lodestar homolog)
          Length = 1162

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 164 LSKIKWSYLMVDEAHRLKNSEASLYIAL 247
           L +I W+ +++DEAH +KN      IA+
Sbjct: 726 LLRIAWARIILDEAHNVKNPRVQTSIAV 753

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>TNFL4_RAT (Q9Z2P3) Tumor necrosis factor ligand superfamily member 4 (OX40|
           ligand) (OX40L) (CD252 antigen)
          Length = 199

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 133 SSYQSMEFYMPSTLLICKELMLLTHLSASTISDINYNIHVR 11
           + Y++ME    S ++ C  L L+ HL  S   ++  N+H R
Sbjct: 82  NEYETMEVQNNSVIINCDGLYLI-HLKGSFFQEVKINLHFR 121

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>YQHH_BACSU (P54509) Hypothetical ATP-dependent helicase yqhH (EC 3.6.1.-)|
          Length = 557

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 155 KAVLSKIKWSYLMVDEAHRLKNSEASLY 238
           + ++  I +  +++DEAH+LKNS+   Y
Sbjct: 161 REIVLSIPYDLVIIDEAHKLKNSKTKNY 188

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>ARGR_BACSK (Q5WF65) Arginine repressor|
          Length = 149

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 92  KGGRHVKFHTLITTYEVILKDKAV 163
           KG RH+K   +IT YE+  +D  V
Sbjct: 3   KGQRHIKIREIITNYEIETQDDLV 26


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,715,497
Number of Sequences: 219361
Number of extensions: 577921
Number of successful extensions: 1187
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result