ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 196 2e-47
2dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 196 2e-47
3ref|XM_649902.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 42 0.83
4emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 42 0.83
5ref|XM_691530.1| PREDICTED: Danio rerio similar to KIAA1564 prot... 42 0.83
6ref|XM_683163.1| PREDICTED: Danio rerio similar to KIAA1564 prot... 42 0.83
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.83
8emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 i... 42 0.83
9gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P... 42 0.83
10gb|AC079678.1|AC079678 Arabidopsis thaliana chromosome 1 BAC F9E... 42 0.83
11emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, co... 42 0.83
12ref|NM_114905.1| Arabidopsis thaliana HR1 (HOMOLOG OF RPW8 1) AT... 40 3.3
13ref|XM_474264.1| Oryza sativa (japonica cultivar-group), predic... 40 3.3
14gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, comp... 40 3.3
15gb|AC114818.4| Mus musculus BAC clone RP23-47O11 from 8, complet... 40 3.3
16gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, ... 40 3.3
17gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, comp... 40 3.3
18emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 3.3
19emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome 3, B... 40 3.3
20gb|AC182431.3| Pan troglodytes BAC clone CH251-185D5 from chromo... 40 3.3
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
22gb|AF273059.1|AF273059 Arabidopsis thaliana RESISTANCE TO POWDER... 40 3.3
23gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 3.3
24gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332... 40 3.3
25dbj|AK098957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
26dbj|AK073700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
27emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.3 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  196 bits (99), Expect = 2e-47
 Identities = 156/175 (89%)
 Strand = Plus / Minus

                                                                            
Query: 65       cagcagcatgagttctttacaaataagaagggtggacggcatgtaaaattccatactttg 124
                ||||||||||| || |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 27779983 cagcagcatgaattttttacaaataagaagggtggtcgacatgtaaaattccatacattg 27779924

                                                                            
Query: 125      ataactacttatgaggtgatacttaaggacaaagccgtcctttcaaaaatcaaatggagt 184
                ||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||  
Sbjct: 27779923 ataactacttatgaggtcatacttaaggacaaagctgccctttccaagatcaaatggaac 27779864

                                                                       
Query: 185      tatcttatggttgatgaagcccaccgtttgaagaattctgaagcatcactgtata 239
                ||||||||||| |||||||| || || || ||||||| ||||||||| |||||||
Sbjct: 27779863 tatcttatggtcgatgaagctcatcgattaaagaattgtgaagcatcgctgtata 27779809



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                      
Query: 5        tggctacctgacatgaatgttgtaatttatgtcggaaatcgtgctagcagagag 58
                |||||||||||||||||||||||  ||||||| |||||||||||||||||||||
Sbjct: 27780671 tggctacctgacatgaatgttgtggtttatgtgggaaatcgtgctagcagagag 27780618
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496C02
          Length = 148419

 Score =  196 bits (99), Expect = 2e-47
 Identities = 156/175 (89%)
 Strand = Plus / Minus

                                                                         
Query: 65    cagcagcatgagttctttacaaataagaagggtggacggcatgtaaaattccatactttg 124
             ||||||||||| || |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 72362 cagcagcatgaattttttacaaataagaagggtggtcgacatgtaaaattccatacattg 72303

                                                                         
Query: 125   ataactacttatgaggtgatacttaaggacaaagccgtcctttcaaaaatcaaatggagt 184
             ||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||  
Sbjct: 72302 ataactacttatgaggtcatacttaaggacaaagctgccctttccaagatcaaatggaac 72243

                                                                    
Query: 185   tatcttatggttgatgaagcccaccgtttgaagaattctgaagcatcactgtata 239
             ||||||||||| |||||||| || || || ||||||| ||||||||| |||||||
Sbjct: 72242 tatcttatggtcgatgaagctcatcgattaaagaattgtgaagcatcgctgtata 72188



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                   
Query: 5     tggctacctgacatgaatgttgtaatttatgtcggaaatcgtgctagcagagag 58
             |||||||||||||||||||||||  ||||||| |||||||||||||||||||||
Sbjct: 73050 tggctacctgacatgaatgttgtggtttatgtgggaaatcgtgctagcagagag 72997
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>ref|XM_649902.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (39.t00016) partial mRNA
          Length = 6105

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 171  aaatcaaatggagttatctta 191
            |||||||||||||||||||||
Sbjct: 3050 aaatcaaatggagttatctta 3030
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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 51     gcagagagatgtgtcagcagcatga 75
              |||||||||||| ||||||||||||
Sbjct: 145939 gcagagagatgtttcagcagcatga 145963
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>ref|XM_691530.1| PREDICTED: Danio rerio similar to KIAA1564 protein (LOC568214), mRNA
          Length = 7560

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 195  ttgatgaagcccaccgtttgaagaa 219
            |||||||||| ||||||||||||||
Sbjct: 2960 ttgatgaagctcaccgtttgaagaa 2984
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>ref|XM_683163.1| PREDICTED: Danio rerio similar to KIAA1564 protein (LOC559791), mRNA
          Length = 7569

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 195  ttgatgaagcccaccgtttgaagaa 219
            |||||||||| ||||||||||||||
Sbjct: 2969 ttgatgaagctcaccgtttgaagaa 2993
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 51       gcagagagatgtgtcagcagcatga 75
                |||||||||||| ||||||||||||
Sbjct: 24767250 gcagagagatgtttcagcagcatga 24767274
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>emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 in linkage group 2,
              complete sequence
          Length = 170771

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 195    ttgatgaagcccaccgtttgaagaa 219
              |||||||||| ||||||||||||||
Sbjct: 146799 ttgatgaagctcaccgtttgaagaa 146823
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>gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete
            sequence
          Length = 108387

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 139  ggtgatacttaaggacaaagc 159
            |||||||||||||||||||||
Sbjct: 2398 ggtgatacttaaggacaaagc 2378
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>gb|AC079678.1|AC079678 Arabidopsis thaliana chromosome 1 BAC F9E11 genomic sequence, complete
             sequence
          Length = 39601

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   ggtgatacttaaggacaaagc 159
             |||||||||||||||||||||
Sbjct: 36474 ggtgatacttaaggacaaagc 36454
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>emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, complete sequence
          Length = 205118

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 195    ttgatgaagcccaccgtttgaagaa 219
              |||||||||| ||||||||||||||
Sbjct: 178329 ttgatgaagctcaccgtttgaagaa 178353
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>ref|NM_114905.1| Arabidopsis thaliana HR1 (HOMOLOG OF RPW8 1) AT3G50450 (HR1) mRNA,
           complete cds
          Length = 570

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 caaatggagttatcttatgg 194
           ||||||||||||||||||||
Sbjct: 151 caaatggagttatcttatgg 132
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>ref|XM_474264.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 gtttgaagaattctgaagca 229
           ||||||||||||||||||||
Sbjct: 241 gtttgaagaattctgaagca 222
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>gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, complete sequence
          Length = 201345

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    catgagttctttacaaataa 90
             ||||||||||||||||||||
Sbjct: 74616 catgagttctttacaaataa 74597
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>gb|AC114818.4| Mus musculus BAC clone RP23-47O11 from 8, complete sequence
          Length = 100405

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tcactgtatattgctctttt 249
             ||||||||||||||||||||
Sbjct: 71893 tcactgtatattgctctttt 71912
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>gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, complete sequence
          Length = 163635

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     acatgaatgttgtaatttat 34
              ||||||||||||||||||||
Sbjct: 158950 acatgaatgttgtaatttat 158931
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>gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, complete sequence
          Length = 187070

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tcactgtatattgctctttt 249
             ||||||||||||||||||||
Sbjct: 62685 tcactgtatattgctctttt 62704
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
            complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  gtttgaagaattctgaagca 229
            ||||||||||||||||||||
Sbjct: 6766 gtttgaagaattctgaagca 6747
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>emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23
          Length = 83513

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   caaatggagttatcttatgg 194
             ||||||||||||||||||||
Sbjct: 12522 caaatggagttatcttatgg 12503
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>gb|AC182431.3| Pan troglodytes BAC clone CH251-185D5 from chromosome 19, complete
              sequence
          Length = 159441

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 109    aaaattccatactttgataactacttat 136
              ||||||||||| ||| ||||||||||||
Sbjct: 140491 aaaattccataattttataactacttat 140464
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 210      gtttgaagaattctgaagca 229
                ||||||||||||||||||||
Sbjct: 34095384 gtttgaagaattctgaagca 34095365
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>gb|AF273059.1|AF273059 Arabidopsis thaliana RESISTANCE TO POWDERY MILDEW8 (RPW8) locus,
             complete cds
          Length = 13889

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   caaatggagttatcttatgg 194
             ||||||||||||||||||||
Sbjct: 12682 caaatggagttatcttatgg 12701
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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    acatgaatgttgtaatttat 34
             ||||||||||||||||||||
Sbjct: 41678 acatgaatgttgtaatttat 41697
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>gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332E11, complete sequence
          Length = 179393

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 109   aaaattccatactttgataactacttat 136
             ||||||||||| ||| ||||||||||||
Sbjct: 19737 aaaattccataattttataactacttat 19710
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>dbj|AK098957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067B02, full
           insert sequence
          Length = 2714

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 gtttgaagaattctgaagca 229
           ||||||||||||||||||||
Sbjct: 265 gtttgaagaattctgaagca 284
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>dbj|AK073700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058I11, full
           insert sequence
          Length = 2717

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 gtttgaagaattctgaagca 229
           ||||||||||||||||||||
Sbjct: 289 gtttgaagaattctgaagca 308
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>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gtttgaagaattctgaagca 229
             ||||||||||||||||||||
Sbjct: 12436 gtttgaagaattctgaagca 12417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,560,764
Number of Sequences: 3902068
Number of extensions: 2560764
Number of successful extensions: 44826
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44748
Number of HSP's gapped (non-prelim): 78
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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