ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl44b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SP7_MOUSE (Q8VI67) Transcription factor Sp7 (Zinc finger protein... 29 3.6
2SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7) 28 8.1
3KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-ass... 28 8.1
4SP7_HUMAN (Q8TDD2) Transcription factor Sp7 (Zinc finger protein... 28 8.1
5RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated w... 28 8.1
6GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10 28 8.1

>SP7_MOUSE (Q8VI67) Transcription factor Sp7 (Zinc finger protein osterix)|
           (C22)
          Length = 428

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 76  GSGGFWSRGAGSGAGLTACDC 14
           GSGG+    AGSGAG + CDC
Sbjct: 253 GSGGY----AGSGAGRSTCDC 269



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>SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7)|
          Length = 380

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 233 PHSLPHLPAPSFTSPYT 183
           PH LPHLP P ++  +T
Sbjct: 223 PHHLPHLPGPPYSPEFT 239



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>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein|
           5.1) (Ultrahigh sulfur keratin-associated protein 5.1)
          Length = 278

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 88  GDSRGSGGFWSRGAGSGAGLTACDCS 11
           G S+G  G    G GSG G+  C CS
Sbjct: 191 GGSKGGCGSGCGGCGSGCGVPVCCCS 216



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>SP7_HUMAN (Q8TDD2) Transcription factor Sp7 (Zinc finger protein osterix)|
          Length = 431

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 76  GSGGFWSRGAGSGAGLTACDC 14
           GSGG+     GSGAG ++CDC
Sbjct: 256 GSGGY----GGSGAGRSSCDC 272



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>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal|
           yellow protein) (Maternally expressed hnRNP C-related
           protein)
          Length = 312

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 88  GDSRGSGGFWSRGAGSGAGLTACDCSPR 5
           G S G GG  + G GSG G  +C  S R
Sbjct: 233 GGSSGGGGSSNVGGGSGGGSGSCSSSSR 260



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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 88  GDSRGSGGFWSRGAGSGAG 32
           GD RG GG+ S G G G G
Sbjct: 114 GDRRGGGGYGSGGGGRGGG 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,965,289
Number of Sequences: 219361
Number of extensions: 297526
Number of successful extensions: 3223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3188
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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