ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl44b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 329 bits (166), Expect = 2e-87 Identities = 207/222 (93%), Gaps = 9/222 (4%) Strand = Plus / Plus Query: 40 gaccgtccctcgcctgcttccttccccgacgcgacaggcgaatccaaggtttcgcggcgg 99 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 6 gaccgtcgctcgcctgcttccttcaccgacgcgacaggcgaatccaaggtttcgcggcgg 65 Query: 100 ---------tcgcacgcgctggatctgacgcggcagctcccggcggccgtctactactgc 150 | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 66 ttgcggccctagcacgcgctggatctgacgcggcagctcccggcggccgcgtactactgc 125 Query: 151 ctgctcttcgctgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatg 210 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 126 ctgctcttcgctgcgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatg 185 Query: 211 cttccccggaagcgggagatcgtcgccggcgaggtcgaggac 252 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 cttccccggaagcgggagatcgtcgccggcgaggtcgaggac 227
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 252 bits (127), Expect = 5e-64 Identities = 147/151 (97%), Gaps = 2/151 (1%) Strand = Plus / Plus Query: 102 gcacgcgctggatctgacgcggcagctcccggcggccgtctactactgcctgctcttcgc 161 ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 174 gcacgcgctggatctgacgcg-cagctcccggcggccgcgtactactgcctgctcttcgc 232 Query: 162 tgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaa 221 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 233 tgcgtcggcggccgtcctcgggctcctcggc-gcgtcgcgcgctatatgcttccccggaa 291 Query: 222 gcgggagatcgtcgccggcgaggtcgaggac 252 ||||||||||||||||||||||||||||||| Sbjct: 292 gcgggagatcgtcgccggcgaggtcgaggac 322 Score = 79.8 bits (40), Expect = 4e-12 Identities = 66/73 (90%), Gaps = 5/73 (6%) Strand = Plus / Plus Query: 18 cccatcccagaaaccctagacggaccgtccctcgcctgctt-ccttccccgacgcgacag 76 |||| |||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct: 8 cccagcccagaaaccctagac----cgtcgctcgcctgctttccttccccgacgcgacag 63 Query: 77 gcgaatccaaggt 89 ||||||||||||| Sbjct: 64 gcgaatccaaggt 76
>gb|AY597048.1| Oncorhynchus mykiss macrophage myristoylated alanine-rich C kinase-like protein mRNA, complete cds Length = 1307 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 cctcgggctcctcggcggcgtc 198 |||||||||||||||||||||| Sbjct: 389 cctcgggctcctcggcggcgtc 368
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 174 cgtcctcgggctcctcggcggc 195 |||||||||||||||||||||| Sbjct: 8332 cgtcctcgggctcctcggcggc 8353
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.21 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Minus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 237 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228 Query: 238 ggcgaggtcg 247 |||||||||| Sbjct: 317227 ggcgaggtcg 317218 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 317350 ctggatctgacgcggcagctc 317330
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 173 ccgtcctcgggctcctcggcggcgtc 198 |||||||||||| ||||||||||||| Sbjct: 4787528 ccgtcctcgggcgcctcggcggcgtc 4787503
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 44.1 bits (22), Expect = 0.21 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 237 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 289 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 347 Query: 238 ggcgaggtcg 247 |||||||||| Sbjct: 348 ggcgaggtcg 357 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 225 ctggatctgacgcggcagctc 245
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.21 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Minus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 237 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228 Query: 238 ggcgaggtcg 247 |||||||||| Sbjct: 317227 ggcgaggtcg 317218 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 317350 ctggatctgacgcggcagctc 317330
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 44.1 bits (22), Expect = 0.21 Identities = 60/70 (85%), Gaps = 2/70 (2%) Strand = Plus / Minus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 237 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 50337 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 50279 Query: 238 ggcgaggtcg 247 |||||||||| Sbjct: 50278 ggcgaggtcg 50269 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 50401 ctggatctgacgcggcagctc 50381
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 gtcgccggcgaggtcgaggac 252 ||||||||||||||||||||| Sbjct: 4504569 gtcgccggcgaggtcgaggac 4504549 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ggagatcgtcgccggcgaggtcgag 249 |||||||||||||| |||||||||| Sbjct: 404648 ggagatcgtcgccgccgaggtcgag 404672
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 300382 ctggatctgacgcggcagctc 300362 Score = 40.1 bits (20), Expect = 3.3 Identities = 56/68 (82%) Strand = Plus / Minus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 238 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259 Query: 239 gcgaggtc 246 |||||||| Sbjct: 300258 gcgaggtc 300251
>gb|AF202898.1|AF202898 Streptomyces coelicolor A3(2) type I polyketide synthase gene, partial cds Length = 2203 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 gccgtcctcgggctcctcggc 192 ||||||||||||||||||||| Sbjct: 1431 gccgtcctcgggctcctcggc 1411
>gb|DQ333391.1| Cervid herpesvirus 2 glycoprotein C gene, complete cds Length = 1522 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Minus Query: 180 cgggctcctcggcggcgtcgcgcgc 204 |||||||||||||| |||||||||| Sbjct: 1188 cgggctcctcggcgccgtcgcgcgc 1164
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 300382 ctggatctgacgcggcagctc 300362 Score = 40.1 bits (20), Expect = 3.3 Identities = 56/68 (82%) Strand = Plus / Minus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 238 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259 Query: 239 gcgaggtc 246 |||||||| Sbjct: 300258 gcgaggtc 300251
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 4611 ctggatctgacgcggcagctc 4631 Score = 40.1 bits (20), Expect = 3.3 Identities = 56/68 (82%) Strand = Plus / Plus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 238 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 4675 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 4734 Query: 239 gcgaggtc 246 |||||||| Sbjct: 4735 gcgaggtc 4742
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ctggatctgacgcggcagctc 129 ||||||||||||||||||||| Sbjct: 7700 ctggatctgacgcggcagctc 7680 Score = 40.1 bits (20), Expect = 3.3 Identities = 56/68 (82%) Strand = Plus / Minus Query: 179 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 238 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 7636 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 7577 Query: 239 gcgaggtc 246 |||||||| Sbjct: 7576 gcgaggtc 7569
>ref|XM_475618.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atcgtcgccggcgaggtcga 248 |||||||||||||||||||| Sbjct: 48 atcgtcgccggcgaggtcga 67
>ref|XM_468450.1| Oryza sativa (japonica cultivar-group), mRNA Length = 390 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 248 agcgggaggtcgtcgccggcgagg 225
>ref|XM_507059.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474F11.28-1 mRNA Length = 2304 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 79 agcgggaggtcgtcgccggcgagg 102
>ref|XM_468451.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2049 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 caaggtttcgcggcggtcgc 103 |||||||||||||||||||| Sbjct: 1950645 caaggtttcgcggcggtcgc 1950626
>gb|AY657515.1| Synthetic construct Peudomonas aeruginosa clone FLH040573.01F PA1340 gene, partial cds Length = 669 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 175 gtcctcgggctcctcggcggcgtcgcgc 202 |||||||| |||||||||||||||||| Sbjct: 76 gtcctcggcgtcctcggcggcgtcgcgc 103
>ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA Length = 12715 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tctactactgcctgctcttc 159 |||||||||||||||||||| Sbjct: 11976 tctactactgcctgctcttc 11995
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 caaggtttcgcggcggtcgc 103 |||||||||||||||||||| Sbjct: 1480472 caaggtttcgcggcggtcgc 1480491
>gb|AC154402.2| Mus musculus BAC clone RP24-235N24 from chromosome 13, complete sequence Length = 145213 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cctccagtcccatcccagaa 29 |||||||||||||||||||| Sbjct: 106545 cctccagtcccatcccagaa 106564
>gb|DQ352994.1| Apomyrma stygia voucher RA0120 abdominal-A (AbdA) gene, partial cds Length = 531 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 ggctcctcggcggcgtcgcgcgct 205 |||||||||||||||||| ||||| Sbjct: 358 ggctcctcggcggcgtcgagcgct 381
>gb|DQ352869.1| Pachycondyla stigma voucher RA0243 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 ggctcctcggcggcgtcgcgcgct 205 |||||||||||||||||| ||||| Sbjct: 361 ggctcctcggcggcgtcgagcgct 384
>gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, complete sequence Length = 155807 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tctactactgcctgctcttc 159 |||||||||||||||||||| Sbjct: 39017 tctactactgcctgctcttc 39036
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 caaggtttcgcggcggtcgc 103 |||||||||||||||||||| Sbjct: 1367581 caaggtttcgcggcggtcgc 1367600
>gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166249 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtcgccggcgaggtcgagga 251 |||||||||||||||||||| Sbjct: 85552 gtcgccggcgaggtcgagga 85571
>gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173509 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtcgccggcgaggtcgagga 251 |||||||||||||||||||| Sbjct: 17561 gtcgccggcgaggtcgagga 17580
>gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185404 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtcgccggcgaggtcgagga 251 |||||||||||||||||||| Sbjct: 134007 gtcgccggcgaggtcgagga 134026
>dbj|AK094080.1| Homo sapiens cDNA FLJ36761 fis, clone UTERU2018884 Length = 3017 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tctactactgcctgctcttc 159 |||||||||||||||||||| Sbjct: 2296 tctactactgcctgctcttc 2315
>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence Length = 186783 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tctactactgcctgctcttc 159 |||||||||||||||||||| Sbjct: 17512 tctactactgcctgctcttc 17493
>ref|NM_176328.1| Drosophila melanogaster CG17364-RB, transcript variant B (CG17364), mRNA Length = 2631 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtcgccggcgaggtcgagga 251 |||||||||||||||||||| Sbjct: 1338 gtcgccggcgaggtcgagga 1357
>ref|NM_140417.2| Drosophila melanogaster CG17364-RA, transcript variant A (CG17364), mRNA Length = 2415 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtcgccggcgaggtcgagga 251 |||||||||||||||||||| Sbjct: 1338 gtcgccggcgaggtcgagga 1357
>gb|AY094951.1| Drosophila melanogaster RH68811 full insert cDNA Length = 2014 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtcgccggcgaggtcgagga 251 |||||||||||||||||||| Sbjct: 708 gtcgccggcgaggtcgagga 727
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gccgtcctcgggctcctcgg 191 |||||||||||||||||||| Sbjct: 474763 gccgtcctcgggctcctcgg 474744
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atcgtcgccggcgaggtcga 248 |||||||||||||||||||| Sbjct: 3364388 atcgtcgccggcgaggtcga 3364407
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 35299137 agcgggaggtcgtcgccggcgagg 35299160
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gatcgtcgccggcgaggtcg 247 |||||||||||||||||||| Sbjct: 1961521 gatcgtcgccggcgaggtcg 1961502
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 gacggaccgtccctcgcctg 55 |||||||||||||||||||| Sbjct: 86184 gacggaccgtccctcgcctg 86203
>gb|AE004563.1| Pseudomonas aeruginosa PAO1, section 124 of 529 of the complete genome Length = 9937 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 175 gtcctcgggctcctcggcggcgtcgcgc 202 |||||||| |||||||||||||||||| Sbjct: 7753 gtcctcggcgtcctcggcggcgtcgcgc 7726
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cggcagctcccggcggccgt 140 |||||||||||||||||||| Sbjct: 2129561 cggcagctcccggcggccgt 2129542
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 49471 agcgggaggtcgtcgccggcgagg 49494
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 111187 agcgggaggtcgtcgccggcgagg 111210
>dbj|AK101218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C13, full insert sequence Length = 1728 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atcgtcgccggcgaggtcga 248 |||||||||||||||||||| Sbjct: 116 atcgtcgccggcgaggtcga 135
>dbj|AK071390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H07, full insert sequence Length = 2304 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 79 agcgggaggtcgtcgccggcgagg 102
>dbj|AK062205.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H02, full insert sequence Length = 2049 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 agcgggagatcgtcgccggcgagg 244 |||||||| ||||||||||||||| Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
>dbj|AK060561.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G04, full insert sequence Length = 1730 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atcgtcgccggcgaggtcga 248 |||||||||||||||||||| Sbjct: 115 atcgtcgccggcgaggtcga 134
>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the complete sequence Length = 350428 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 gtcgccggcgaggtcgagga 251 |||||||||||||||||||| Sbjct: 242559 gtcgccggcgaggtcgagga 242540
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 ctcgggctcctcggcggcgtcgcg 201 |||||||| ||||||||||||||| Sbjct: 2637365 ctcgggctgctcggcggcgtcgcg 2637388
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 gcgtcggcggccgtcctcgggctc 186 |||||||||||| ||||||||||| Sbjct: 1756399 gcgtcggcggccatcctcgggctc 1756422
>emb|CT009762.8| Mouse DNA sequence from clone RP23-211O9 on chromosome 13, complete sequence Length = 229171 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 cctccagtcccatcccagaa 29 |||||||||||||||||||| Sbjct: 58389 cctccagtcccatcccagaa 58370
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atcgtcgccggcgaggtcga 248 |||||||||||||||||||| Sbjct: 158212 atcgtcgccggcgaggtcga 158231
>dbj|D45381.1| Carassius auratus mRNA for AMPA-type glutamate receptor, partial cds Length = 2703 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gccgtcctcgggctcctcgg 191 |||||||||||||||||||| Sbjct: 1731 gccgtcctcgggctcctcgg 1712
>gb|U12018.1|CAU12018 Carassius auratus glutamate receptor 4 (glur4) mRNA, partial cds Length = 3613 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gccgtcctcgggctcctcgg 191 |||||||||||||||||||| Sbjct: 1731 gccgtcctcgggctcctcgg 1712
>dbj|AB028740.1| Mus musculus drba gene for drebrin A, partial cds Length = 20387 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 cctccagtcccatcccagaa 29 |||||||||||||||||||| Sbjct: 20315 cctccagtcccatcccagaa 20296 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,428,035 Number of Sequences: 3902068 Number of extensions: 1428035 Number of successful extensions: 35856 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34210 Number of HSP's gapped (non-prelim): 1633 length of query: 252 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 230 effective length of database: 17,147,199,772 effective search space: 3943855947560 effective search space used: 3943855947560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
